LOCUS BC001159 1683 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens paired box 9, mRNA (cDNA clone MGC:1535
IMAGE:3534582), complete cds.
ACCESSION BC001159
VERSION BC001159.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1683)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1683)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: g Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7242166.
FEATURES Location/Qualifiers
source 1..1683
/db_xref="H-InvDB:HIT000030183"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1535 IMAGE:3534582"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1683
/gene="PAX9"
/db_xref="GeneID:5083"
/db_xref="HGNC:HGNC:8623"
/db_xref="MIM:167416"
CDS 190..1215
/gene="PAX9"
/codon_start=1
/product="paired box 9"
/protein_id="AAH01159.1"
/db_xref="GeneID:5083"
/db_xref="HGNC:HGNC:8623"
/db_xref="MIM:167416"
/translation="MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISR
QLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEI
RDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIY
SYPSPITAAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYH
SPKVEEWSSLGRNNFPAAAPHAVNGLEKGALEQEAKYGQAPNGLPAVGSFVSASSMAP
YPTPAQVSPYMTYSAAPSGYVAGHGWQHAGGTSLSPHNCDIPASLAFKGMQAAREGSH
SVTASAL"
BASE COUNT 400 a 520 c 425 g 338 t
ORIGIN
1 aagcctcttt catcggggca cagacttcct tttacttctt ccttttgccc tctcgcctcc
61 tcctcctggg aagaagcgga ggcgccggcg gtcggccggg atagcaacag gccgggccac
121 tgaggcggtg cggaaagttt ctgtctggga gtgcggaact ggggccgggt tggtgtactg
181 ctcggagcaa tggagccagc cttcggggag gtgaaccagc tgggaggagt gttcgtgaac
241 gggaggccgc tgcccaacgc catccggctt cgcatcgtgg aactggccca actgggcatc
301 cgaccgtgtg acatcagccg ccagctacgg gtctcgcacg gctgcgtcag caagatcctg
361 gcgcgataca acgagacggg ctcgatcttg ccaggagcca tcgggggcag caagccccgg
421 gtcactaccc ccaccgtggt gaaacacatc cggacctaca agcagagaga ccccggcatc
481 ttcgcctggg agatccggga ccgcctgctg gcggacggcg tgtgcgacaa gtacaatgtg
541 ccctccgtga gctccatcag ccgcattctg cgcaacaaga tcggcaactt ggcccagcag
601 ggtcattacg actcatacaa gcagcaccag ccgacgccgc agccagcgct gccctacaac
661 cacatctact cgtaccccag ccctatcacg gcggcggccg ccaaggtgcc cacgccaccc
721 ggggtgcctg ccatccccgg ttcggtggcc atgccgcgca cctggccctc ctcgcactcc
781 gtcaccgaca tcctgggcat ccgctccatc accgaccaag tgagcgacag ctccccctac
841 cacagcccca aggtggagga gtggagcagc ctgggccgca acaacttccc cgccgccgcc
901 ccgcatgcgg tgaacgggtt ggagaaggga gccctggagc aggaagccaa gtacggtcag
961 gcaccaaatg gtctcccagc tgtgggcagt tttgtgtcag catccagcat ggctccttac
1021 cctaccccag cccaagtgtc gccttacatg acctacagtg ctgctccttc tggttatgtt
1081 gctggacatg ggtggcaaca tgctgggggc acctcattgt ctccccacaa ctgtgacatt
1141 ccggcatcgc tggcgttcaa gggaatgcag gcagccagag aaggtagtca ttctgtcacg
1201 gcttccgcgc tctgatggga aattccgtct ccagcagctt cacccgggtc tccctgtctc
1261 agcacctcct cccccaattc ccaggtctca catcccaccc ctcctgccct ccaacccttc
1321 tgccttgaaa gctggctgta cggactcaca tcctttgtgc taatgacact tacatatttc
1381 ttgccataac ttttctcttg cagaaaaact gacatgactt taggatttaa aaacaagagc
1441 aacaataagc attgaatgag acatttgtgt tgcccacata ctgtcttaac ataacaaaga
1501 aacctacacc cctcaaaggg tttaaggaac tttacaaact agtctttggt aaaaccacat
1561 gtgtatattt attctaaatc aacctgaact tttgaaatgt gcaattgttg agattttgca
1621 aaatcaataa aggaaaatac ttatagaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1681 aaa
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