LOCUS BC001084 958 bp mRNA linear HUM 30-SEP-2003 DEFINITION Homo sapiens sorting nexin 9, mRNA (cDNA clone IMAGE:2958415), partial cds. ACCESSION BC001084 VERSION BC001084.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 958) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 958) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC001084.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 2 Row: m Column: 4. FEATURES Location/Qualifiers source 1..958 /db_xref="H-InvDB:HIT000050393" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:2958415" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..958 /gene="SNX9" /gene_synonym="SDP1" /gene_synonym="SH3PX1" /gene_synonym="WISP" /db_xref="GeneID:51429" /db_xref="MIM:605952" CDS <1..853 /gene="SNX9" /gene_synonym="SDP1" /gene_synonym="SH3PX1" /gene_synonym="WISP" /codon_start=2 /product="SNX9 protein" /protein_id="AAH01084.3" /db_xref="GeneID:51429" /db_xref="MIM:605952" /translation="KQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNF RDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGVK ELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYE EIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKIT LQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQA LSRFPVM" misc_feature 2..136 /gene="SNX9" /gene_synonym="SDP1" /gene_synonym="SH3PX1" /gene_synonym="WISP" /note="PX; Region: PX domain. PX domains bind to phosphoinositides" /db_xref="CDD:pfam00787" BASE COUNT 315 a 194 c 248 g 201 t ORIGIN 1 caaacaagtc acaggccgct ttgaagagga atttatcaaa atgcgcatgg agagacttca 61 ggcctggatg accaggatgt gtcgccatcc agtaatctca gaaagtgaag ttttccagca 121 gttcctaaat ttccgagatg agaaggaatg gaaaactgga aagaggaagg ccgagagaga 181 tgagctggcg ggagtcatga tattttccac catggaacca gaggcacctg acttggactt 241 agtagaaata gagcagaagt gcgaggctgt ggggaagttc accaaggcca tggatgacgg 301 cgtgaaggag ctgctgacgg tggggcagga gcactggaag cgctgcacgg gcccattacc 361 caaggaatat cagaagatag gaaaggcctt gcagagtttg gccacagtgt tcagttccag 421 tggctatcaa ggtgaaacag atctcaatga tgcaataaca gaagcaggaa agacttatga 481 agaaattgcc agtctcgtgg cagaacagcc aaagaaagat ctccatttcc tgatggaatg 541 taatcacgag tataaaggtt ttcttggctg cttccctgac atcattggca ctcacaaggg 601 agcaatagaa aaagtgaaag aaagtgacaa actagttgca acaagtaaaa tcaccctaca 661 agacaaacag aacatggtga agagagtcag catcatgtct tacgcgttgc aagctgagat 721 gaatcacttt cacagtaacc ggatctatga ttacaacagt gtcatccgcc tgtacctgga 781 gcagcaagtg caattttacg aaacgattgc agaaaagctg aggcaggccc tcagccgctt 841 tccagtgatg taggacagaa cgggccttga agagaatgcc gcgtgctttc tcctgacttg 901 gggcaatgca attcaaaact ttttttcccc tattattcag aaaaaaaaaa aaaaaaaa //