LOCUS BC000938 1793 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens X-box binding protein 1, mRNA (cDNA clone MGC:5436
IMAGE:3449394), complete cds.
ACCESSION BC000938
VERSION BC000938.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1793)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1793)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: f Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1793
/db_xref="H-InvDB:HIT000030017"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5436 IMAGE:3449394"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1793
/gene="XBP1"
/gene_synonym="TREB5"
/db_xref="GeneID:7494"
/db_xref="HGNC:HGNC:12801"
/db_xref="MIM:194355"
CDS 6..791
/gene="XBP1"
/gene_synonym="TREB5"
/codon_start=1
/product="X-box binding protein 1"
/protein_id="AAH00938.1"
/db_xref="GeneID:7494"
/db_xref="HGNC:HGNC:12801"
/db_xref="MIM:194355"
/translation="MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQR
GASPEAASGGLPQARKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQV
VDLEEENQKLLLENQLLREKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAG
SAESAALRLRAPLQQVQAQLSPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSN
ALPQSLPAWRSSQRSTQKDPVPYQPPFLCQWGRHQPSWKPLMN"
BASE COUNT 470 a 437 c 434 g 452 t
ORIGIN
1 gagctatggt ggtggtggca gccgcgccga acccggccga cgggacccct aaagttctgc
61 ttctgtcggg gcagcccgcc tccgccgccg gagccccggc cggccaggcc ctgccgctca
121 tggtgccagc ccagagaggg gccagcccgg aggcagcgag cggggggctg ccccaggcgc
181 gcaagcgaca gcgcctcacg cacctgagcc ccgaggagaa ggcgctgagg aggaaactga
241 aaaacagagt agcagctcag actgccagag atcgaaagaa ggctcgaatg agtgagctgg
301 aacagcaagt ggtagattta gaagaagaga accaaaaact tttgctagaa aatcagcttt
361 tacgagagaa aactcatggc cttgtagttg agaaccagga gttaagacag cgcttgggga
421 tggatgccct ggttgctgaa gaggaggcgg aagccaaggg gaatgaagtg aggccagtgg
481 ccgggtctgc tgagtccgca gcactcagac tacgtgcacc tctgcagcag gtgcaggccc
541 agttgtcacc cctccagaac atctccccat ggattctggc ggtattgact cttcagattc
601 agagtctgat atcctgttgg gcattctgga caacttggac ccagtcatgt tcttcaaatg
661 cccttcccca gagcctgcca gcctggagga gctcccagag gtctacccag aaggacccag
721 ttccttacca gcctcccttt ctctgtcagt ggggacgtca tcagccaagc tggaagccat
781 taatgaacta attcgttttg accacatata taccaagccc ctagtcttag agataccctc
841 tgagacagag agccaagcta atgtggtagt gaaaatcgag gaagcacctc tcagcccctc
901 agagaatgat caccctgaat tcattgtctc agtgaaggaa gaacctgtag aagatgacct
961 cgttccggag ctgggtatct caaatctgct ttcatccagc cactgcccaa agccatcttc
1021 ctgcctactg gatgcttaca gtgactgtgg atacgggggt tccctttccc cattcagtga
1081 catgtcctct ctgcttggtg taaaccattc ttgggaggac acttttgcca atgaactctt
1141 tccccagctg attagtgtct aaggaatgat ccaatactgt tgcccttttc cttgactatt
1201 acactgcctg gaggatagca gagaagcctg tctgtacttc attcaaaaag ccaaaataga
1261 gagtatacag tcctagagaa ttcctctatt tgttcagatc tcatagatga cccccaggta
1321 ttgtcttttg acatccagca gtccaaggta ttgagacata ttactggaag taagaaatat
1381 tactataatt gagaactaca gcttttaaga ttgtactttt atcttaaaag ggtggtagtt
1441 ttccctaaaa tacttattat gtaagggtca ttagacaaat gtcttgaagt agacatggaa
1501 tttatgaatg gttctttatc atttctcttc cccctttttg gcatcctggc ttgcctccag
1561 ttttaggtcc tttagtttgc ttctgtaagc aacgggaaca cctgctgagg gggctctttc
1621 cctcatgtat acttcaagta agatcaagaa tcttttgtga aattatagaa atttactatg
1681 taaatgcttg atggaatttt ttcctgctag tgtagcttct gaaaggtgct ttctccattt
1741 atttaaaact acccatgcaa ttaaaaggta caatgcagca aaaaaaaaaa aaa
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