LOCUS BC000768 2151 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 11, mRNA (cDNA clone MGC:2818
IMAGE:2963905), complete cds.
ACCESSION BC000768
VERSION BC000768.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2151)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2151)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000768.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: h Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111025.
FEATURES Location/Qualifiers
source 1..2151
/db_xref="H-InvDB:HIT000029907"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2818 IMAGE:2963905"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2151
/gene="SNX11"
/db_xref="GeneID:29916"
/db_xref="HGNC:HGNC:14975"
CDS 85..897
/gene="SNX11"
/codon_start=1
/product="sorting nexin 11"
/protein_id="AAH00768.1"
/db_xref="GeneID:29916"
/db_xref="HGNC:HGNC:14975"
/translation="MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHT
NSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQG
LQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRSTMTVSDAILRYAMSNCG
WAQEERQSSSHLAKGDQPKSCCFLPRSGRRSSPSPPPSEEKDHLEVWAPVVDSEVPSL
ESPTLPPLSSPLCCDFGRPKEGTSTLQSVRRAVGGDHAVPLDPGQLETVLEK"
BASE COUNT 460 a 523 c 575 g 593 t
ORIGIN
1 gctgttctca ggagccagcc tggatcattt gttggcagta catattggct gaagtcagtt
61 ttcatttcaa gatgtttcct tccaatgggc ttttggtgta ggatgtcgga gaaccaagaa
121 caggaggagg tgattacagt gcgtgttcag gacccccgag tgcagaatga gggctcctgg
181 aactcttatg tggattataa gatattcctc cataccaaca gcaaagcctt tactgccaag
241 acttcctgtg tgcggcgccg ctaccgtgag ttcgtgtggc tgagaaagca gctacagaga
301 aatgctggtt tggtgcctgt tcctgaactt cctgggaagt caaccttctt cggcacctca
361 gatgagttca ttgagaagcg acgacaaggt ctgcagcact tccttgaaaa ggtcctgcag
421 agtgtggttc tcctgtcaga cagccagttg cacctattcc tgcaaagcca gctctcggtg
481 cctgagatag aagcctgtgt ccagggccga agtaccatga ctgtgtctga tgccattctt
541 cgatatgcta tgtcaaactg tggctgggcc caggaagaga ggcagagctc ttctcacctg
601 gctaaaggag accagcctaa gagttgctgc tttcttccaa gatcgggtag gaggagctct
661 ccctcaccgc ctcccagtga agaaaaggac catttagaag tgtgggctcc agttgttgac
721 tctgaggttc cttccttgga aagtcccact ctcccacccc tctcctcacc attatgctgt
781 gattttggaa gacccaaaga gggaacctcc actcttcagt ctgtgaggag ggctgtggga
841 ggagatcatg ctgtgccttt ggaccctggt cagttagaaa cagttttgga aaagtgagct
901 ctcggttctg ctctgagatg gtcagagaag atgcgggcca ggagacttac tcaggtggga
961 ctgggcacag ggcaggtatg tgggaggctg ggctgcttag tgtcttctag tcacctctgc
1021 ttgggctgat tgacagaggt cagtcattac agccccttat gcctcttcca tgggaacaaa
1081 tactgtgcag atgtttgtaa gttaaacata agacacaggg gctgttgctt ttgaacagaa
1141 ccctatatta ctctcctggg atctgagttt ctgcaggtca tttgtatgta ggaccaggag
1201 tatctcctca ggtgaccagt tttggggacc cgtatgtggc aaattctaag ctgccatatt
1261 gaacatcatc ccactgggag tggttatgtt gtatccccat cttggctggc ttcagttttt
1321 gctgtagccc tagagcactt tgtttgtggg aggctggcct cttgcctacc tccttgcatg
1381 gacaggggga tgaatattta ctttcccacc tccttgcttt ttctttcact gataccactg
1441 aatggaactg gtgctgtgac tcctgctgct ggggatttat gtcccgagac cttagcctgg
1501 ctgagtggag cctgagacct gcacaacagc tcatggtcat gcatgagaga gaagtggctg
1561 gccacagcca gagggaacag taacagccca ggggccttta ttttgggaaa ggctgtccgg
1621 ggctgttact gtctcttctg gttataaagc agacatgtgg ccatcttttc cgcagggtta
1681 gagtgggctc ctttcttttt ggaatccttt tcttctcctt tggtagcagc tccctgcctc
1741 cagggcttcc gccaccagcg tctctgctgt gttgcgcagt gcagtggggt gcaagggctt
1801 tgtttctgcc tgcctgaaag agagggctct ggggatggag atgagaaaca acacgctctc
1861 cttcagacaa tgaggcattc tgtcctcctg ctgccattct tcatctccac tgagagccag
1921 agctggtagg agccgagtgc cacaggcatt ctgcattgct ctactcttag gtttgtgtgt
1981 gtgatccttc ccctccctgt cgcccactcc tccctcctct ggctatccta ccctgtctgt
2041 gggctctttt actaccagcc tatgctgtgg gactgtcatg gcatttagtt cagagtggag
2101 gggctttggc ctgaaataaa atgcaagtat ttaaaaaaaa aaaaaaaaaa a
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