LOCUS BC000735 1165 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens PBX/knotted 1 homeobox 1, mRNA (cDNA clone
IMAGE:3504770), partial cds.
ACCESSION BC000735
VERSION BC000735.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1165)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1165)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000735.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: c Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28866954.
FEATURES Location/Qualifiers
source 1..1165
/db_xref="H-InvDB:HIT000085863"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3504770"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1165
/gene="PKNOX1"
/gene_synonym="PREP1"
/db_xref="GeneID:5316"
/db_xref="MIM:602100"
CDS 158..>1165
/gene="PKNOX1"
/gene_synonym="PREP1"
/codon_start=1
/product="PKNOX1 protein"
/protein_id="AAH00735.1"
/db_xref="GeneID:5316"
/db_xref="MIM:602100"
/translation="MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSEPDAEGVSPPP
VESQTPMDVDKQAIYRHPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEK
EGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLL
SGEPGSPYSPVQSQQIQSAITGTISPQGIVVPASALQQGNVAMATVAGGTVYQPVTVV
TPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLPKHATNVMRS
WLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKKKK
KK"
misc_feature 932..1105
/gene="PKNOX1"
/gene_synonym="PREP1"
/note="HOX; Region: Homeodomain"
/db_xref="CDD:smart00389"
BASE COUNT 349 a 278 c 280 g 258 t
ORIGIN
1 gtcgcgtggc ccagcgtcgg cgtgacggtt ggacgcgggc gcggcactgc gggtcccgat
61 tgctgcagcc gcttgtcagt gtgatgaaga ttggcaccca gacaccattc gcttttcacc
121 caagatgatt tgatgtctta taaaactctg atgaaccatg atggctacac agacattaag
181 tatagacagc tatcaagatg ggcaacagat gcaagtagta acagagttaa agacagaaca
241 agatccaaac tgctctgaac ccgatgcaga aggagtgagc cctccccctg tggagtctca
301 gaccccgatg gatgtggaca agcaggccat ttataggcat ccactatttc cattattagc
361 tttgttgttt gaaaaatgtg aacaatctac acagggctct gaaggcacaa cttctgccag
421 ttttgatgta gacatcgaaa attttgtaag aaagcaagag aaggaaggga aacctttctt
481 ttgtgaagat ccagaaaccg ataatttaat ggtaaaagca atccaggttt tgcgcattca
541 tcttcttgag ctggaaaagg ttaacgaact ctgcaaagat ttctgcagtc gatacattgc
601 ttgtctgaaa acaaaaatga acagtgaaac tctgttgagt ggagagcctg gaagcccgta
661 ctcaccagtg cagtcccagc agattcaaag tgccatcaca ggcaccatca gccctcaggg
721 aattgtggtg ccggcgtccg cgctgcagca gggaaacgta gccatggcga cggtggcagg
781 tggcacagtg tatcagcctg tcacggtcgt cactccccaa ggccaagtgg tcacacagac
841 attgtcgcct gggacaatta ggatccagaa ctcccagctt cagttacagt taaaccaaga
901 tctcagcatc ttgcatcaag atgatggttc atctaagaac aagaggggcg tcctgccaaa
961 gcatgccacg aacgtgatgc ggtcctggct cttccagcac atcgggcatc cctacccaac
1021 agaggatgag aaaaaacaga ttgctgctca gacaaatttg acactactcc aagtcaacaa
1081 ctggttcatc aatgccagaa gacgaattct tcagccaatg ttggattcaa gttgttcaga
1141 gacccccaaa aaaaaaaaaa aaaaa
//