LOCUS BC000621 3019 bp mRNA linear HUM 21-OCT-2003 DEFINITION Homo sapiens neural precursor cell expressed, developmentally down-regulated 4-like, mRNA (cDNA clone IMAGE:3346045), partial cds. ACCESSION BC000621 VERSION BC000621.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3019) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3019) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Oct 8, 2003 this sequence version replaced BC000621.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 5 Row: o Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21361471. FEATURES Location/Qualifiers source 1..3019 /db_xref="H-InvDB:HIT000085851" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3346045" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..3019 /gene="NEDD4L" /gene_synonym="hNedd4-2" /gene_synonym="KIAA0439" /gene_synonym="RSP5" /db_xref="GeneID:23327" /db_xref="MIM:606384" CDS <1..2568 /gene="NEDD4L" /gene_synonym="hNedd4-2" /gene_synonym="KIAA0439" /gene_synonym="RSP5" /codon_start=1 /product="NEDD4L protein" /protein_id="AAH00621.2" /db_xref="GeneID:23327" /db_xref="MIM:606384" /translation="RDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHKSRVKG FLRLKMAYMPKNGGQDEENSDQRDDMEHGWEVVDSNDSASQHQEELPPPPLPPGWEEK VDNLGRTYYVNHNNRTTQWHRPSLMDVSSESDNNIRQINQEAAHRRFRSRRHISEDLE PEPSEGGDVPEPWETISEEVNIAGDSLGLALPPPPASPGSRTSPQELSEELSRRLQIT PDSNGEQFSSLIQREPSSRLRSCSVTDAVAEQGHLPPPSVAYVHTTPGLPSGWEERKD AKGRTYYVNHNNRTTTWTRPIMQLAEDGASGSATNSNNHLIEPQIRRPRSLSSPTVTL SAPLEGAKDSPVRRAVKDTLSNPQSPQPSPYNSPKPQHKVTQSFLPPGWEMRIAPNGR PFFIDHNTKTTTWEDPRLKFPVHMRSKTSLNPNDLGPLPPGWEERIHLDGRTFYIDHN SKITQWEDPRLQNPAITGPAVPYSREFKQKYDYFRKKLKKPADIPNRFEMKLHRNNIF EESYRRIMSVKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYS ATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQI TLNDMESVDSEYYNSLKWILENDPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNE NKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDV NDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYG SNGPQLFTIEQWGSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAVENAQGFEGVD" misc_feature 292..372 /gene="NEDD4L" /gene_synonym="hNedd4-2" /gene_synonym="KIAA0439" /gene_synonym="RSP5" /note="WW; Region: WW domain. The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro" /db_xref="CDD:pfam00397" misc_feature 799..2553 /gene="NEDD4L" /gene_synonym="hNedd4-2" /gene_synonym="KIAA0439" /gene_synonym="RSP5" /note="HUL4; Region: COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]" /db_xref="CDD:COG5021" BASE COUNT 864 a 734 c 693 g 728 t ORIGIN 1 cgagacgact tcctgggcca ggtggacgtg ccccttagtc accttccgac agaagatcca 61 accatggagc gaccctatac atttaaggac tttctcctca gaccaagaag tcataagtct 121 cgagttaagg gatttttgcg attgaaaatg gcctatatgc caaaaaatgg aggtcaagat 181 gaagaaaaca gtgaccagag ggatgacatg gagcatggat gggaagttgt tgactcaaat 241 gactcggctt ctcagcacca agaggaactt cctcctcctc ctctgcctcc cgggtgggaa 301 gaaaaagtgg acaatttagg ccgaacttac tatgtcaacc acaacaaccg gaccactcag 361 tggcacagac caagcctgat ggacgtgtcc tcggagtcgg acaataacat cagacagatc 421 aaccaggagg cagcacaccg gcgcttccgc tcccgcaggc acatcagcga agacttggag 481 cccgagccct cggagggcgg ggatgtcccc gagccttggg agaccatttc agaggaagtg 541 aatatcgctg gagactctct cggtctggct ctgcccccac caccggcctc cccaggatct 601 cggaccagcc ctcaggagct gtcagaggaa ctaagcagaa ggcttcagat cactccagac 661 tccaatgggg aacagttcag ctctttgatt caaagagaac cctcctcaag gttgaggtca 721 tgcagtgtca ccgacgcagt tgcagaacag ggccatctac caccgccatc agtggcctat 781 gtacatacca cgccgggtct gccttcaggc tgggaagaaa gaaaagatgc taaggggcgc 841 acatactatg tcaatcataa caatcgaacc acaacttgga ctcgacctat catgcagctt 901 gcagaagatg gtgcgtccgg atcagccaca aacagtaaca accatctaat cgagcctcag 961 atccgccggc ctcgtagcct cagctcgcca acagtaactt tatctgcccc gctggagggt 1021 gccaaggact cacccgtacg tcgggctgtg aaagacaccc tttccaaccc acagtcccca 1081 cagccatcac cttacaactc ccccaaacca caacacaaag tcacacagag cttcttgcca 1141 cccggctggg aaatgaggat agcgccaaac ggccggccct tcttcattga tcataacaca 1201 aagactacaa cctgggaaga tccacgtttg aaatttccag tacatatgcg gtcaaagaca 1261 tctttaaacc ccaatgacct tggccccctt cctcctggct gggaagaaag aattcacttg 1321 gatggccgaa cgttttatat tgatcataat agcaaaatta ctcagtggga agacccaaga 1381 ctgcagaacc cagctattac tggtccggct gtcccttact ccagagaatt taagcagaaa 1441 tatgactact tcaggaagaa attaaagaaa cctgctgata tccccaatag gtttgaaatg 1501 aaacttcaca gaaataacat atttgaagag tcctatcgga gaattatgtc cgtgaaaaga 1561 ccagatgtcc taaaagctag actgtggatt gagtttgaat cagagaaagg tcttgactat 1621 gggggtgtgg ccagagaatg gttcttctta ctgtccaaag agatgttcaa cccctactac 1681 ggcctctttg agtactctgc cacggacaac tacacccttc agatcaaccc taattcaggc 1741 ctctgtaatg aggatcattt gtcctacttc acttttattg gaagagttgc tggtctggcc 1801 gtatttcatg ggaagctctt agatggtttc ttcattagac cattttacaa gatgatgttg 1861 ggaaagcaga taaccctgaa tgacatggaa tctgtggata gtgaatatta caactctttg 1921 aaatggatcc tggagaatga ccctactgag ctggacctca tgttctgcat agacgaagaa 1981 aactttggac agacatatca agtggatttg aagcccaatg ggtcagaaat aatggtcaca 2041 aatgaaaaca aaagggaata tatcgactta gtcatccagt ggagatttgt gaacagggtc 2101 cagaagcaga tgaacgcctt cttggaggga ttcacagaac tacttcctat tgatttgatt 2161 aaaatttttg atgaaaatga gctggagttg ctcatgtgcg gcctcggtga tgtggatgtg 2221 aatgactgga gacagcattc tatttacaag aacggctact gcccaaacca ccccgtcatt 2281 cagtggttct ggaaggctgt gctactcatg gacgccgaaa agcgtatccg gttactgcag 2341 tttgtcacag ggacatcgcg agtacctatg aatggatttg ccgaacttta tggttccaat 2401 ggtcctcagc tgtttacaat agagcaatgg ggcagtcctg agaaactgcc cagagctcac 2461 acatgcttta atcgccttga cttacctcca tatgaaacct ttgaagattt acgagagaaa 2521 cttctcatgg ccgtggaaaa tgctcaagga tttgaagggg tggattaagc accctgtgcc 2581 tcgggggtgg ttgttcttca agcaagttct gcttgcactt ttgcatttgc ctaacagact 2641 tttgcagagg cgatggcaga gagcagctgc aggcatggtc cctggagccg agccttcacc 2701 acgcactcgt ccaagttcgg atgcgggaac ctggtcccag cttgagttcc tgcctttccc 2761 accacaaatt atcaactggt tgatgtgtac actaattaca tttcaggagg acttaatgct 2821 atttatgttg tgcctctgca ggcaaagccc ttaataaata ttttacatcc tttctaatga 2881 caatgaatgg aattaatcac tcaacaggta tagtattacg actcatgttt actttttaaa 2941 atgatttaga ccgattttca gattttattt cgttatgatt aaagatgtct catgtacttg 3001 gaaaaaaaaa aaaaaaaaa //