LOCUS BC000611 1057 bp mRNA linear HUM 28-SEP-2006
DEFINITION Homo sapiens small nuclear ribonucleoprotein polypeptide N, mRNA
(cDNA clone MGC:1613 IMAGE:3347412), complete cds.
ACCESSION BC000611
VERSION BC000611.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1057)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1057)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC000611.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: g Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29540556.
FEATURES Location/Qualifiers
source 1..1057
/db_xref="H-InvDB:HIT000029773"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1613 IMAGE:3347412"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1057
/gene="SNRPN"
/gene_synonym="HCERN3"
/gene_synonym="RT-LI"
/gene_synonym="SM-D"
/gene_synonym="SMN"
/gene_synonym="SNRNP-N"
/gene_synonym="SNURF-SNRPN"
/db_xref="GeneID:6638"
/db_xref="HGNC:HGNC:11164"
/db_xref="MIM:182279"
CDS 187..909
/gene="SNRPN"
/gene_synonym="HCERN3"
/gene_synonym="RT-LI"
/gene_synonym="SM-D"
/gene_synonym="SMN"
/gene_synonym="SNRNP-N"
/gene_synonym="SNURF-SNRPN"
/codon_start=1
/product="SNRPN protein"
/protein_id="AAH00611.1"
/db_xref="GeneID:6638"
/db_xref="HGNC:HGNC:11164"
/db_xref="MIM:182279"
/translation="MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCD
CDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAG
GPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATAS
IAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPP
GMRPPPPGIRGPPPPGMRPPRP"
BASE COUNT 258 a 275 c 267 g 257 t
ORIGIN
1 ctggtttttg cttggaatca gattcctcgc tactccaata tggctttaac cacctctttg
61 aagcttctgc ccagcttgca ttgtttctag gagaacccgc gtcatacctt tatctatagc
121 cttcccctag gtcttcagaa gcatcaagtt ttaactgtgg acattggatt tggtggaaca
181 gcaatcatga ctgttggcaa gagtagcaag atgctgcagc acattgacta tagaatgaga
241 tgtatcctgc aagatggccg aatcttcatt ggcaccttta aggcttttga caagcatatg
301 aatttgatcc tctgtgattg tgatgagttc agaaagatca agccaaagaa tgcgaagcaa
361 ccagagcgtg aagaaaagcg ggttttgggt ctggtgttgc tgcgtgggga gaacttggta
421 tccatgactg tggaggggcc accccccaaa gatactggca ttgctcgggt accacttgct
481 ggagctgctg gaggccctgg ggttggtagg gcagctggta gaggagtacc agctggtgtg
541 ccaattcccc aggcccctgc tggattggca ggccctgtcc gaggagttgg gggaccatcc
601 cagcaggtaa tgactccaca gggaagaggc actgtagcag ctgctgctgt tgctgcgact
661 gccagtattg ctggagcccc aacacagtac ccaccaggac ggggcactcc gcccccaccc
721 gtcggcagag caaccccacc tccaggcatt atggctcctc cacctggtat gagaccaccc
781 atgggcccac caattgggct tccccctgct cgagggacgc caataggcat gccgcctccg
841 ggaatgagac cccctccacc aggcattaga ggtccacctc ccccaggaat gcgtccacca
901 agaccttagc atactgttga tccatctcag tcactttttc ccctgcaatg cgtcttgtga
961 aattgtgtag agtgtttgtg agctttttgt tccctcattc tgcattaata atagctaata
1021 ataaatgcat agagcaatta aaaaaaaaaa aaaaaaa
//