LOCUS BC000536 1590 bp mRNA linear HUM 15-FEB-2005
DEFINITION Homo sapiens Vac14 homolog (S. cerevisiae), mRNA (cDNA clone
IMAGE:3162364), partial cds.
ACCESSION BC000536
VERSION BC000536.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1590)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1590)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC000536.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: a Column: 3.
FEATURES Location/Qualifiers
source 1..1590
/db_xref="H-InvDB:HIT000029718"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3162364"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1590
/gene="VAC14"
/gene_synonym="ArPIKfyve"
/gene_synonym="FLJ10305"
/gene_synonym="TAX1BP2"
/gene_synonym="TRX"
/db_xref="GeneID:55697"
/db_xref="MIM:604632"
CDS <1..1071
/gene="VAC14"
/gene_synonym="ArPIKfyve"
/gene_synonym="FLJ10305"
/gene_synonym="TAX1BP2"
/gene_synonym="TRX"
/codon_start=1
/product="VAC14 protein"
/protein_id="AAH00536.2"
/db_xref="GeneID:55697"
/db_xref="MIM:604632"
/translation="HLYIKTPRKMFRHTDSLFPILLQTLSDESDEVILKDLEVLAEIA
SSPAGQTDDPGPLDGPDLQASHSELQVPTPGRAGLLNTSGTKGLECSPSTPTMNSYFY
KFMINLLKRFSSERKLLEVRGPFIIRQLCLLLNAENIFHSMADILLREEDLKFASTMV
HALNTILLTSTELFQLRNQLKDLKTLESQNLFCCLYRSWCHNPVTTVSLCFLTQNYRH
AYDLIQKFGDLEVTVDFLAEVDKLVQLIECPIFTYLRLQLLDVKNNPYLIKALYGLLM
LLPQSSAFQLLSHRLQCVPNPELLQTEDSLKAAPKSQKADSPSIDYAELLQHFEKVQN
KHLEVRHQRSGRGDHLDRRVVL"
BASE COUNT 382 a 515 c 390 g 303 t
ORIGIN
1 cacctctaca tcaaaactcc tcggaagatg ttccggcaca cggacagcct ctttcccatc
61 ctactgcaga cgttatcgga tgaatcggat gaggtgatcc tgaaggacct ggaggtgctg
121 gcagaaatcg cttcctcccc cgcaggccag acggatgacc caggccccct cgatggccct
181 gacctccagg ccagccactc agagctccag gtgcccaccc ctggcagagc cggcctactg
241 aacacctctg gtaccaaagg cttagaatgt tctccttcaa ctcccaccat gaattcttac
301 ttttataagt tcatgatcaa ccttctcaag agattcagca gcgaacggaa gctcctggag
361 gtcagaggcc ctttcatcat caggcagctg tgcctcctgc tgaatgcgga gaacatcttc
421 cactcaatgg cagacatcct gctgcgggag gaggacctca agttcgcctc gaccatggtc
481 cacgccctca acaccatcct gctgacctcc acagagctct tccagctaag gaaccagctg
541 aaggacctga agaccctgga gagccagaac ctgttctgct gcctgtaccg ctcctggtgc
601 cacaacccag tcaccacggt gtccctctgc ttcctcaccc agaactaccg gcacgcctat
661 gacctcatcc agaagtttgg ggacctggag gtcaccgtgg acttcctcgc agaggtggac
721 aagctggtgc agctgattga gtgccccatc ttcacatatc tgcgcctgca gctgctggac
781 gtgaagaaca acccctacct gatcaaggcc ctctacggcc tgctcatgct cctgccgcag
841 agcagcgcct tccagctgct ctcgcaccgg ctccagtgcg tgcccaaccc tgagctgctg
901 cagaccgaag acagtctaaa ggcagccccc aagtcccaga aagctgactc ccctagcatc
961 gactacgcag agctgctgca gcactttgag aaggtccaga acaagcacct ggaagtgcgg
1021 caccagcgga gcgggcgtgg ggaccacctg gaccggaggg ttgtcctctg acaggcctgg
1081 cacggaggag ggcccaccga gtggtcccat gaaacactaa gggtcgtcac gccctcccga
1141 ggagctcaag gacctgcctg tcaggaccag ggctgggcct gccaacccag ggcagtgttg
1201 gggccggagg ctgctgtgtc tgcccaagct cctctcagag tccagtcccc aggcctccag
1261 cgctgtcagc tgcaccctgg cattctcaca gagctggctg cccacccagt ggggggctat
1321 agcctcagag accactcatc ctctggaatc aacctctttc taataccctc ttggaaaaag
1381 agcttgcccc tcctccagca cactagagct ctggccttgt gtgtatatgt atacatacgt
1441 gaacacatgc ctgtgtgtgt gtgtgtgtgt gtacttgtat gcacgtaggc accagcacaa
1501 agatctgaat gatgcacccc acccccaccc caataaagaa ataacagaaa accctcaaaa
1561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//