LOCUS BC000515 2252 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens U-box domain containing 5, mRNA (cDNA clone MGC:8549
IMAGE:2822816), complete cds.
ACCESSION BC000515
VERSION BC000515.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2252)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2252)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000515.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: j Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40806195.
FEATURES Location/Qualifiers
source 1..2252
/db_xref="H-InvDB:HIT000029697"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8549 IMAGE:2822816"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2252
/gene="UBOX5"
/gene_synonym="KIAA0860"
/gene_synonym="RNF37"
/gene_synonym="UBCE7IP5"
/gene_synonym="UIP5"
/db_xref="GeneID:22888"
/db_xref="HGNC:HGNC:17777"
CDS 107..1732
/gene="UBOX5"
/gene_synonym="KIAA0860"
/gene_synonym="RNF37"
/gene_synonym="UBCE7IP5"
/gene_synonym="UIP5"
/codon_start=1
/product="U-box domain containing 5"
/protein_id="AAH00515.1"
/db_xref="GeneID:22888"
/db_xref="HGNC:HGNC:17777"
/translation="MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTE
YFIKPPVYVTVSFPFNVEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTL
GPAEPSVPDKEAFTLVGKVLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELW
NKGALSLSHVAHLRICITHVTGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLP
QDVALQAPALPMESDCDPGDQPESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPM
LLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQ
HSIPGCHLLGRAQTALAVIPSSIVLPSQKRKIEQAEHVPDSNFGVNASCFSATSPLVL
PTTSEHTAKKMKATNEPSLTHMDCSTGPLSHEQKLSQSLEIALASTLGSMPSFTARLT
RGQLQHLGTRGSNTSWRPGTGSEQPGSILGPECASCKRVFSPYFKKEPVYQLPCGHLL
CRPCLGEKQRSLPMTCTACQRPVASQDVLRVHF"
BASE COUNT 503 a 694 c 598 g 457 t
ORIGIN
1 ctgtgtcgcc gccgcccgcg gcgtccccgg tttggtgttg cggcgcccac cttcgggagg
61 atcaggctgc ttctgatgct tggaagatat cctctcagcc acaaagatgg taataaatct
121 ttgcctccca cagttcagac caagaattca ctgcaacaag atatcagctg atggttacga
181 agtagaaaat ctcatctctg aagatctcac aaagagaagt catggtttca ggacagagta
241 tttcattaag ccaccagtct atgtgacagt ttcatttccc tttaatgtgg aaatctgtag
301 gatcaacata gacctcacag ctgggggagg tcagaacgtc actggcctgg aaatgtacac
361 atctgcctca tctagcagag tgtcttggaa tacgccccag tgccggaccc tgggcccagc
421 tgagccatct gtcccagaca aggaggcgtt caccttggta ggcaaagtct tactgaaaaa
481 ccagagccaa gtggtgttta gccacagggg cttcaaggcc aggccccctt ttggcgcgat
541 ggaagccaca ctcccctccc ctgctgttgt ggcccaggag ctctggaata aaggggctct
601 ttcccttagc cacgtggccc acttaaggat ctgtatcacc catgtgacag gcggcggtat
661 cccttgtatc aagcggttgg aagtgtgggg tcagccggcc aagacctgct cccaggaagt
721 gatagacagc atcctgctgg tcacctcaga gaacctgcct caggatgtgg ctctgcaggc
781 tccagccttg cccatggaaa gtgactgtga ccctggggac cagcctgaga gccagcaggc
841 tccctccagc ctgcagaagc tggccgagat cattcaggat gtgcctgagg agttcctgga
901 tcccatcacc ctggagatca tgccttgtcc catgctgctg ccctcaggca aggtcatcga
961 ccagagcaca ctggagaagt gtaaccgcag tgaagccaca tggggccgag tgcccagtga
1021 ccctttcacg ggggtagctt ttactccgca ctctcagccc ctgcctcacc cctccctcaa
1081 ggcccggatt gaccatttcc tgctccagca ctccatccct ggctgccacc tgcttgggag
1141 agcacagacg gcattggcag tgatcccttc ttccattgtt ctgccctctc agaaaaggaa
1201 gatagagcag gctgaacatg tcccagacag taactttggt gtaaatgctt cctgtttttc
1261 tgccacaagc cctttggtct tacccactac ctcagagcac actgctaaga aaatgaaagc
1321 caccaatgag cccagcctga cacatatgga ctgctcgaca ggtccactgt cccacgagca
1381 gaagctgtca caaagcttgg aaattgcctt ggcatccacc cttggctcta tgccctcctt
1441 cacggcacgg ctgaccaggg gacagctcca gcaccttggc acaagaggga gcaacacttc
1501 ctggaggcct ggcaccggct cggagcagcc tgggagcatc ctgggccccg aatgtgcctc
1561 ctgcaaaaga gtattttctc cctacttcaa aaaggagccg gtgtaccagc tgccctgcgg
1621 ccacctcctg tgccgaccct gcctgggtga gaagcaacgc tccctgccca tgacgtgcac
1681 agcctgccag cggccggttg ctagccaaga cgtgctgcgg gtccacttct gagtgactga
1741 cctccactgg aggagaccca ttgctgggag gagctgaggg ggaacaggag cagggccaca
1801 gcacccctga ggtctggcca ggccccaggc acagagctgc ctgctccctc ccggggctct
1861 tcttcatcac ctcacggtat agcacattgc ttctgcgctg gtggcaatag ggcaacaaag
1921 ccataggcca gagggcgggg ggatgtccct gcctccctgc caccccccct gcctgagccc
1981 aggacccact ggagccagcc ccaccctagg caggaagacc cctgctgagg gcccccccgt
2041 gcagtccgca tacccccctg tccagcaggg cactgtgggt ggctcaccct agattgtggc
2101 ccagatctca ggagtctctg ccttcagggt catccaaaag tggaccttgg gagcagtggg
2161 ggtgtctgtg gagtgcatga ctcagccccc cgactcgcag ccttaataaa gcgatggttg
2221 acgtctgcaa aaaaaaaaaa aaaaaaaaaa aa
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