LOCUS BC000503 1466 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens Rab9 effector protein with kelch motifs, mRNA (cDNA
clone MGC:8459 IMAGE:2821471), complete cds.
ACCESSION BC000503
VERSION BC000503.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1466)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1466)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000503.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: f Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33695108.
FEATURES Location/Qualifiers
source 1..1466
/db_xref="H-InvDB:HIT000029685"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8459 IMAGE:2821471"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1466
/gene="RABEPK"
/gene_synonym="bA65N13.1"
/gene_synonym="p40"
/gene_synonym="RAB9P40"
/db_xref="GeneID:10244"
/db_xref="HGNC:HGNC:16896"
/db_xref="MIM:605962"
CDS 308..1426
/gene="RABEPK"
/gene_synonym="bA65N13.1"
/gene_synonym="p40"
/gene_synonym="RAB9P40"
/codon_start=1
/product="Rab9 effector protein with kelch motifs"
/protein_id="AAH00503.1"
/db_xref="GeneID:10244"
/db_xref="HGNC:HGNC:16896"
/db_xref="MIM:605962"
/translation="MKQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGN
AKRGKVFIVGGANPNRSFSDVHTMDLGKYQWDLDTCKGLLPRYEHASFIPSCTPDRIW
VFGGANQSGNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGER
GAQPVQDTKLHVFDANTLTWSQPETLGNPPSPRHGHVMVAAGTKLFIHGGLAGDRFYD
DLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTE
EQHWTLLKFDTLLPPGRLDHSMCIIPWPVTCASEKEGSNSLTLNHEAEKEDSADKVMS
HSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVVD"
BASE COUNT 380 a 382 c 388 g 316 t
ORIGIN
1 ggcgagggtc cccggatacc gggtctatca cagtctcggg cagggagtct gaatctttta
61 ggggagtggg cccaagccgg gtgcaaaaaa cggggaaggg ccttccctgg ctccgtcccg
121 gccactttga ccgaatcagc ctgttctttc ccgaccccgt ctcctatccc ctagaactgc
181 cacgtgggga tgagatttgc tgggctggta gcggcggctg ctgcgggagg tcccgcccac
241 gtgaagccag cctaactgag ctctggactt tggggacagc tgtcagtggc ctaggccgca
301 ggacaccatg aagcaactgc cagtcttgga acctggagac aagcccagga aagcaacatg
361 gtacaccttg actgtccctg gagacagccc ctgtgctcga gttggccaca gctgttcata
421 tttaccccca gttggtaatg ccaagagagg gaaggtcttc attgttgggg gagcaaatcc
481 aaacagaagc ttctcagacg tgcacaccat ggatctggga aaataccagt gggacttaga
541 tacctgcaag ggcctcttgc cccggtatga acatgctagc ttcattccct cctgcacacc
601 tgaccgtatc tgggtatttg gaggtgccaa ccaatcagga aatcgaaatt gtctacaagt
661 cctgaatcct gaaaccagga cgtggaccac gccagaagtg accagccccc caccatcccc
721 aagaacattc cacacatcat cggcagccat tggaaaccag ctatatgtct ttgggggcgg
781 agagagaggt gcccagcccg tgcaggacac gaagctgcat gtgtttgacg caaacactct
841 gacctggtca cagccagaga cacttggaaa tcctccatct ccccggcatg gtcatgtgat
901 ggtggcagca gggacaaagc tcttcatcca cggaggcttg gcgggggaca gattctatga
961 tgacctccac tgcattgata taagtgacat gaaatggcag aagctaaatc ccactggggc
1021 tgctccagca ggctgtgctg cccactcagc tgtggccatg ggaaaacatg tgtacatctt
1081 tggtggaatg actcctgcag gagcactgga cacaatgtac cagtatcaca cagaagagca
1141 gcattggacc ttgcttaaat ttgatactct tctaccccct ggacgattgg accattccat
1201 gtgtatcatt ccatggccag tgacgtgtgc ttctgagaaa gaaggttcca actctctcac
1261 tctgaaccat gaagctgaga aagaggattc agctgacaaa gtaatgagcc acagtggtga
1321 ctcacatgag gaaagccaga ctgctacact gctctgtttg gtgtttggtg ggatgaatac
1381 agaaggggaa atctatgacg attgtattgt gactgtagtg gactaataaa acccacattt
1441 ttattaccaa aaaaaaaaaa aaaaaa
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