LOCUS BC000467 1500 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens peroxisomal biogenesis factor 16, mRNA (cDNA clone
MGC:8550 IMAGE:2822827), complete cds.
ACCESSION BC000467
VERSION BC000467.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1500)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1500)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000467.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: j Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4758897.
FEATURES Location/Qualifiers
source 1..1500
/db_xref="H-InvDB:HIT000029652"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8550 IMAGE:2822827"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1500
/gene="PEX16"
/db_xref="GeneID:9409"
/db_xref="HGNC:HGNC:8857"
/db_xref="MIM:603360"
CDS 19..1059
/gene="PEX16"
/codon_start=1
/product="peroxisomal biogenesis factor 16"
/protein_id="AAH00467.1"
/db_xref="GeneID:9409"
/db_xref="HGNC:HGNC:8857"
/db_xref="MIM:603360"
/translation="MEKLRLLGLRYQEYVTRHPAATAQLETAVRGFSYLLAGRFADSH
ELSELVYSASNLLVLLNDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAK
VWGELGRWLVIALIQLAKAVLRILLLLWFKAGLQTSPPIVPLDRETQAQPPDGDHSPG
NHEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATPTPLGLQET
IAEFLYIARPLLHLLSLGLWGQRSWKPWLLAGVVDVTSLSLLSDRKGLTRRERRELRR
RTILLLYYLLRSPFYDRFSEARILFLLQLLADHVPGVGLVTTSQRAASPCLPARPHTQ
PWSPPAFLPGHP"
BASE COUNT 269 a 486 c 456 g 289 t
ORIGIN
1 gtcggtgccg agggcaggat ggagaagctg cggctcctgg gcctccgcta ccaggagtac
61 gtgactcgtc acccggccgc cacggcccag ctggagacag cagtgcgggg cttcagttac
121 ctgctggcag gtcgattcgc cgattcgcac gagctgtcag agctggtgta ctctgcctct
181 aacctgcttg tgctgctcaa tgacgggatc ctacggaagg agcttcggaa aaagttgcct
241 gtgtcgctgt cccagcagaa gctgctgaca tggctgagcg tgctggagtg cgtggaggtg
301 ttcatggaga tgggagctgc caaggtgtgg ggtgaattgg gccgctggct tgtcatcgcc
361 ctcatccagc tggccaaggc tgtactgcgg attctcctgc tgctctggtt caaggctggc
421 ctccagactt caccccctat cgttccactg gacagagaga cccaggcaca gcccccggat
481 ggtgaccaca gccctggcaa ccatgagcag tcctacgtgg ggaagcggtc aaaccgggtg
541 gtgcgaaccc tccagaacac gccgtccctg cactccaggc actggggagc tccccagcag
601 cgggagggac ggcagcagca gcatcacgag gagctgagtg cgacccccac ccccctgggg
661 ctgcaggaga ccatcgcaga gtttttgtac attgcccggc cgctgctgca cttgctcagc
721 ctgggcctgt ggggtcagag gtcgtggaaa ccctggctct tggctggtgt tgtggacgtg
781 accagcctga gcctcctgag tgacagaaag ggcctgaccc ggagggagcg gcgggagctg
841 cggcgccgga ccatcctgct gctctactac ctgctgcgct ctcctttcta cgaccgcttc
901 tccgaggcca ggatcctctt cctgctccag ttgctggccg accacgtccc tggcgttggc
961 ctggtcacaa cgtcccagcg tgcggcctct ccgtgcctac cggccaggcc ccacacacag
1021 ccctggtcgc caccagcgtt cctcccagga cacccttgac tgcgctctcc tgtgacgatg
1081 ccactgcagc ccgcaccttg tcactgctgg gccaagaagc cttcactagg agtgggatcc
1141 aggctcctct cccacagaaa gcggtgactt cacctcatgg agcccgggaa gctgcttgcc
1201 tcggcagcca taggagcgaa cactgctgct ctctcgctgg cccctggtga ggacaggaag
1261 cctgaacccg ggtgatggct gaacgctgcc cagcgtgtct tctggctggg gccctccgtc
1321 tgccccttct ccgcagggcc ctgtggctct ggcagcccca ggccatggcg ttgccagcct
1381 ccctgtgaca gagcctggtg aacagtgagc ctggctccca cgcaagtggc actttaagcc
1441 ctgcatcctc ggttgagagt aaaaggcttt tctcccttaa aaaaaaaaaa aaaaaaaaaa
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