LOCUS BC000380 2947 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens ribosomal RNA processing 1 homolog (S. cerevisiae),
mRNA (cDNA clone MGC:8387 IMAGE:2820455), complete cds.
ACCESSION BC000380
VERSION BC000380.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2947)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2947)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000380.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: c Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41352715.
FEATURES Location/Qualifiers
source 1..2947
/db_xref="H-InvDB:HIT000029569"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8387 IMAGE:2820455"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2947
/gene="RRP1"
/gene_synonym="D21S2056E"
/gene_synonym="NNP-1"
/gene_synonym="NOP52"
/gene_synonym="RRP1A"
/db_xref="GeneID:8568"
/db_xref="HGNC:HGNC:18785"
/db_xref="MIM:610653"
CDS 41..1426
/gene="RRP1"
/gene_synonym="D21S2056E"
/gene_synonym="NNP-1"
/gene_synonym="NOP52"
/gene_synonym="RRP1A"
/codon_start=1
/product="ribosomal RNA processing 1 homolog (S.
cerevisiae)"
/protein_id="AAH00380.1"
/db_xref="GeneID:8568"
/db_xref="HGNC:HGNC:18785"
/db_xref="MIM:610653"
/translation="MVSRVQLPPEIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAA
GGFTHDELLKVWKGLFYCMWMQDKPLLQEELGRTISQLVHAFQTTEAQHLFLQAFWQT
MNREWTGIDRLRLDKFYMLMRMVLNESLKVLKMQGWEERQIEELLELLMTEILHPSSQ
APNGVKSHFIEIFLEELTKVGAEELTADQNLKFIDPFCRIAARTKDSLVLNNITRGIF
ETIVEQAPLAIEDLLNELDTQDEEVASDSDESSEGGERGDALSQKRSEKPPAGSICRA
EPEAGEEQAGDDRDSGGPVLQFDYEAVANRLFEMASRQSTPSQNRKRLYKVIRKLQDL
AGGIFPEDEIPEKACRRLLEGRRQKKTKKQKRLLRLQQERGKGEKEPPSPGMERKRSR
RRGVGADPEARAEAGEQPGTAERALLRDQPRGRGQRGARQRRRTPRPLTSARAKAANV
QEPEKKKKRRE"
BASE COUNT 646 a 795 c 980 g 526 t
ORIGIN
1 ccaggcgact ccgggacagg gggtctcggc cgtcggcgtc atggtttcgc gcgtgcagct
61 cccgcctgag atccagctgg ctcagcgcct ggcggggaat gagcaggtga cccgggaccg
121 ggcggtgagg aagctccgga aatacatcgt cgccaggact cagcgggccg caggtggttt
181 tacgcacgac gagctgctga aggtgtggaa aggactgttt tattgcatgt ggatgcagga
241 caagccactc ctccaggaag aattaggaag gactatttcc cagctcgttc atgcttttca
301 gaccacggag gcgcagcacc tgttccttca ggccttctgg cagaccatga atcgcgagtg
361 gacgggcatt gacaggctgc gcctggataa attctacatg ctcatgcgga tggtcctgaa
421 cgagtccttg aaggttctga agatgcaagg ctgggaagaa agacagatcg aggagctgct
481 agagctgctg atgactgaga tcctgcaccc cagcagccag gcccccaacg gtgtgaagag
541 ccacttcatc gagatcttcc tggaggagct gaccaaagtg ggcgccgagg agcttacggc
601 agaccagaac ctgaagttca tcgacccctt ctgcagaatc gctgcccgga ccaaggattc
661 cttggttttg aacaacatca ctcgaggcat ctttgagacg attgtggagc aggccccgct
721 tgccattgaa gacctcctga atgaactgga cacacaggat gaggaggtgg cgtcggacag
781 tgatgagtcc tctgagggtg gtgagcgtgg agacgcgctg tcccagaaga ggtctgagaa
841 gccgcccgca ggctccatct gcagggctga acctgaggct ggtgaggagc aggcaggtga
901 cgacagggac agtggcggcc ccgttctcca gtttgactac gaggcagttg ctaacagact
961 gtttgaaatg gccagccgcc agagcacccc ttctcagaac agaaagcgtc tctacaaagt
1021 gatccggaag ctgcaggacc tggcaggagg cattttccct gaagatgaga tcccagagaa
1081 ggcctgcagg cgcctgcttg aagggaggcg gcagaagaag acgaagaagc agaagcgtct
1141 gctcaggttg cagcaggaga gagggaaagg tgagaaggag cccccgagcc cgggcatgga
1201 gaggaagagg agcaggagga ggggtgtagg ggccgacccc gaggcgcggg cagaggctgg
1261 tgagcagcca ggcacagctg agcgggccct gctccgagat cagcccaggg gccgtggcca
1321 gagaggggct cgccagagaa ggaggacacc tcggcccctg accagtgccc gagcaaaggc
1381 ggccaatgtc caggagccgg agaagaagaa gaaacgcagg gagtgatgtg gccgggccaa
1441 ggacaggcag ggagggaggc caggcctcgc ttgcaccgcg ggacgaggct gaccgggctg
1501 ttctgtagac tcaggaccgt ggctccagaa ctcctgtgcc aggcgggagg gaagggcggc
1561 actggagaga tgggcccatc attaggggcc agcatcccag gaactggacc tttccccaga
1621 gcctccgcct gtggctgtga tgaccttggg ccagaaggtc aaactccgaa gactgaaact
1681 ctgcctgcag caggactggc tgcccctgct gtggggggtt cagaaaataa aatgccgcgc
1741 agcccttgcc agggaagtgt cgcttcgggt gtgtcctacg gacgtgtggg aggtggcagg
1801 cgccagcctc cgagcagtgt ggtggtttat attcatgttt gtggaaaaat cttgcaagac
1861 atttctcctt tcacagaact gcccaggtgt taacagggct gtctggacgg ggctcttttg
1921 cttccccctc aatctggggt ctagagttgt gcagggaatt cagctccagt aaggcctgga
1981 ttgcccgggg tgagcgtgtg tgtggtggga agacctggct tccgcgagag ccttgttcct
2041 ggaggcagga gcgccccgcc atcctgggta cccgcgggtc cgcaggctgc gcacctcttt
2101 ccctcagcca ggtcaccctc agcgtcctcc ctgcccctct ccccttcaca cctgctggag
2161 cctgtgaggg aggtggcggg tccccactgt ggcgacggag agctgacagt agcccagggc
2221 tttctacctg catggaacaa gggcctgtct gccgccagcg ctgtggccac agcctgcata
2281 ggtgacaagg ggccgctgcg ttgggttttg cccgcatctt ctgttccatg ggtgcccagc
2341 cagccaggcc gtgtgggatc cagcgagagg ccagggcttg gagtgggcct gggaccagga
2401 aggacctcta ggctgtggct ggccttgtgc agaccctgga ctgcatccgg ttccccaaag
2461 ccctgctgca ttcgagtgtc ccccaacccc gggcaggtgg cacctggtga cacctccttc
2521 agtcccactc agctgggcgg ccggggcagg cttagggcac agttaggggc caaggagagg
2581 gaaggccagg gcccctgttc taggggttag ggttctttcc ccaaaggaac ttaaaaagac
2641 aagcgtggcc aggcacagtg gctcacacct gtaatcccag cactttggga ggccgaggtg
2701 gccagatcac ctgaggtcag gagtttgaga ccagactgac caacatggag aaaccccatc
2761 tctactaaaa tacaaaatta gccaggcgtg gtggcacatg cctgtaatcc cagctactcg
2821 ggaggctgag gcaggagaat tgcttgaacc tgggaggcag aggttgtggt gagctaagat
2881 cacgccattg cactccagcc tgggcaacga gagggaaact ctgtttcaaa aaaaaaaaaa
2941 aaaaaaa
//