LOCUS BC000361 1533 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens HLA-B associated transcript 1, mRNA (cDNA clone
MGC:8674 IMAGE:2964517), complete cds.
ACCESSION BC000361
VERSION BC000361.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1533)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1533)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000361.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: o Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45580711.
FEATURES Location/Qualifiers
source 1..1533
/db_xref="H-InvDB:HIT000029552_07"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8674 IMAGE:2964517"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1533
/gene="BAT1"
/gene_synonym="D6S81E"
/db_xref="GeneID:7919"
/db_xref="HGNC:HGNC:13917"
/db_xref="MIM:142560"
CDS 40..1326
/gene="BAT1"
/gene_synonym="D6S81E"
/codon_start=1
/product="HLA-B associated transcript 1"
/protein_id="AAH00361.1"
/db_xref="GeneID:7919"
/db_xref="HGNC:HGNC:13917"
/db_xref="MIM:142560"
/translation="MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHS
SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA
TLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV
LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT
PHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNR
KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK
DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS
DENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR"
BASE COUNT 381 a 367 c 407 g 378 t
ORIGIN
1 cgctgttgct gccgccatac gcgctctccc tgtttagtta tggcagagaa cgatgtggac
61 aatgagctct tggactatga agatgatgag gtggagacag cagctggggg agatggggct
121 gaggcccctg ccaagaagga tgtcaagggc tcctatgtct ccatccacag ctctggcttt
181 cgtgacttcc tgctcaagcc agagttgctc cgggccattg tcgactgtgg ctttgagcat
241 ccgtcagaag tccagcatga gtgcatccct caggccattc tgggaatgga tgtcctgtgc
301 caggccaagt cgggcatggg aaagacagca gtgtttgtct tggccacact gcaacagctg
361 gagccagtta ctgggcaggt gtctgtgctg gtgatgtgtc acactcggga gttggctttt
421 cagatcagca aggaatatga gcgcttctct aaatacatgc ccaatgtcaa ggttgctgtt
481 ttttttggtg gtctgtctat caagaaggat gaagaggtgc tgaagaagaa ctgcccgcat
541 atcgtcgtgg ggactccagg ccgtatccta gccctggctc gaaataagag cctcaacctc
601 aaacacatta aacactttat tttggatgaa tgtgataaga tgcttgaaca gctcgacatg
661 cgtcgggatg tccaggaaat ttttcgcatg accccccacg agaagcaggt catgatgttc
721 agtgctacct tgagcaaaga gatccgtcca gtctgccgca agttcatgca agatccaatg
781 gagatcttcg tggatgatga gacgaagttg acgctgcatg ggttgcagca gtactacgtg
841 aaactgaagg acaacgagaa gaaccggaag ctctttgacc ttctggatgt ccttgagttc
901 aaccaggtgg tgatctttgt gaagtctgtg cagcggtgca ttgccttggc ccagctacta
961 gtggagcaga acttcccagc cattgccatc caccgtggga tgccccagga ggagaggctt
1021 tctcggtatc agcagtttaa agattttcaa cgacgaattc ttgtggctac caacctattt
1081 ggccgaggca tggacatcga gcgggtgaac attgctttta attatgacat gcctgaggat
1141 tctgacacct acctgcatcg ggtggccaga gcaggccggt ttggcaccaa gggcttggct
1201 atcacatttg tgtccgatga gaatgatgcc aagatcctca atgatgtgca ggatcgcttt
1261 gaggtcaata ttagtgagct gcctgatgag atagacatct cctcctacat tgaacagaca
1321 cggtagaaga ctcgcccatt ttggaatgtg accgtctgtc cttcaggaga ggacaccagg
1381 gtgggggtga aggagacact actgccccca cccctgacag cccccacccc atggcttcca
1441 tcttttgcat caccaccact cctgaacccc catttctgat ttgtcagaat ttttttttaa
1501 caaaactaaa aatgaaaaaa aaaaaaaaaa aaa
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