LOCUS BC000350 2806 bp mRNA linear HUM 25-AUG-2005
DEFINITION Homo sapiens ubiquitin specific peptidase 11, mRNA (cDNA clone
IMAGE:2961383), partial cds.
ACCESSION BC000350
VERSION BC000350.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2806)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2806)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000350.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: m Column: 11.
FEATURES Location/Qualifiers
source 1..2806
/db_xref="H-InvDB:HIT000029542"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2961383"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2806
/gene="USP11"
/gene_synonym="UHX1"
/db_xref="GeneID:8237"
/db_xref="MIM:300050"
CDS <1..2766
/gene="USP11"
/gene_synonym="UHX1"
/codon_start=1
/product="USP11 protein"
/protein_id="AAH00350.4"
/db_xref="GeneID:8237"
/db_xref="MIM:300050"
/translation="AMATVAANPAAAAAAVAAAAAVTEDREPQHEELPGLDSQWRQIE
NGESGRERPLRAGESWFLVEKHWYKQWEAYVQGGDQDSSTFPGCINNATLFQDEINWR
LKEGLVEGEDYVLLPAAAWHYLVSWYGLEHGQPPIERKVIELPNIQKVEVYPVELLLV
RHNDLGKSHTVQFSHTDSIGLVLRTARERFLVEPQEDTRLWAKNSEGSLDRLYDTHIT
VLDAALETGQLIIMETRKKDGTWPSAQLHVMNNNMSEEDEDFKGQPGICGLTNLGNTC
FMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQAWSGHHRS
IVPHVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRP
DQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLLISH
KRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGISPERMMVADVFSHRF
YKLYQLEEPLSSILDRDDIFVYEVSGRIEAIEGSREDIVVPVYLRERTPARDYNNSYY
GLMLFGHPLLVSVPRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKEDDEEDKDD
VPGPSTGGSLRDPEPEQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTLQTVNS
NGTSDRTTSPEEVHAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKKAPVRLQ
ECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSREK
LDTLVEFPIRDLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFACNKDS
GQWHYFDDNSVSPVNENQIESKAAYVLFYQRQDVARRLLSPAGSSGAPASPACSSPPS
SEFMDVN"
BASE COUNT 658 a 790 c 795 g 563 t
ORIGIN
1 gcgatggcga cggtcgcagc aaatccagct gctgctgcgg cggctgtggc ggcggcagcg
61 gcggtgactg aggatagaga gccacagcac gaggagctgc caggcctgga cagccagtgg
121 cgccagatag aaaacggcga gagtgggcga gaacgtccac tgcgggccgg cgaaagctgg
181 ttccttgtgg agaagcactg gtataagcag tgggaggcat acgtgcaggg aggggaccag
241 gactccagca ccttccctgg ctgcatcaac aatgccacac tctttcaaga tgagataaac
301 tggcgcctca aggagggact ggtggaaggc gaggattatg tgctgctccc agcagctgct
361 tggcattacc tggtcagctg gtatggtcta gagcatggcc agccacccat tgaacgcaag
421 gtcatagagc tgcccaacat ccagaaggtc gaagtgtacc cagtagaact gctgcttgtc
481 cggcacaatg atttgggcaa atctcacact gttcagttca gccataccga ttctattggc
541 ctagtattgc gcacagctcg ggagcggttt ctggtggagc cccaggaaga cactcggctt
601 tgggccaaga actcagaagg ctctttggat aggttgtatg acacacacat cacggttctc
661 gatgcggccc ttgagactgg gcagttgatc atcatggaga cccgcaagaa agatggcact
721 tggcccagcg cacagctgca tgtcatgaac aacaacatgt cggaagagga tgaggacttc
781 aagggtcagc caggcatctg tggcctcacc aatctgggca acacgtgctt catgaactcg
841 gccctgcagt gcctcagcaa tgtgccacag ctcaccgagt acttcctcaa caactgctac
901 ctggaggagc tcaacttccg caacccactg ggcatgaagg gtgagatcgc agaggcctat
961 gcagacctgg tgaagcaggc gtggtctggc caccaccgct ccattgtgcc acatgtgttc
1021 aagaacaagg ttggccattt tgcatcccaa tttctgggct accagcagca tgactctcag
1081 gagctgctgt cattcctcct ggacgggctg catgaggacc ttaatcgggt gaagaagaag
1141 gagtatgtgg agctgtgcga tgctgctggg cgaccggatc aggaggtggc acaggaggca
1201 tggcaaaacc acaaacggcg gaacgattct gtgatcgtgg acactttcca cggcctcttc
1261 aagtccacgc tggtgtgccc cgattgtggc aatgtatctg tgaccttcga ccccttctgc
1321 tacctcagtg ttccactgct tatcagccac aagagggtct tggaggtctt ctttatcccc
1381 atggatccgc gccgcaagcc agagcagcac cggctcgtgg tccccaagaa aggcaagatc
1441 tcggatctat gtgtggctct gtccaaacac acgggcatct cgccagagag gatgatggtg
1501 gctgatgtct tcagtcaccg cttctataag ctctatcagc tagaggagcc tctgagcagc
1561 atcttggacc gtgatgatat cttcgtctat gaggtgtcag gtcgcattga ggccattgag
1621 ggctcaagag aggacatcgt ggttcctgtc tacctgcggg agcgcacccc tgcccgtgac
1681 tacaacaact cctactacgg cctgatgctt tttggacacc ccctcctggt atcagtgccc
1741 cgggaccgct tcacctggga gggcctgtat aacgtcctga tgtaccggct ctcacgctac
1801 gtgaccaaac ccaactcaga tgatgaggac gatggggatg agaaagaaga tgacgaggag
1861 gataaagatg acgtccctgg gccctcaact gggggcagcc tccgagaccc tgagccagag
1921 caggctgggc ccagctctgg agtcacgaac aggtgcccgt tcctcctgga caattgcctt
1981 ggcacatctc agtggccccc aaggcgacga cgcaagcagc tgttcaccct gcagacggtg
2041 aactccaatg ggaccagcga ccgcacaacc tcccctgaag aagtccatgc ccagccgtac
2101 attgctatcg actgggagcc agagatgaag aagcgttact atgacgaggt agaggctgag
2161 ggctacgtga agcatgactg cgtcgggtac gtgatgaaga aggctcccgt gcggctgcag
2221 gagtgcattg agctcttcac cactgtggag accctggaga aggaaaaccc ctggtactgc
2281 ccttcctgca agcagcacca gctggcaacc aagaagctgg acctgtggat gctgccggag
2341 attctcatca tccacctgaa acgcttttcc tacaccaagt tctcccgaga gaagctggac
2401 accctcgtgg agtttcctat ccgggacctg gacttctctg agtttgtcat ccagccacag
2461 aatgagtcga atccggagct gtacaaatat gacctcatcg cggtttccaa ccattatggg
2521 ggcatgcgtg atggacacta cacaacattt gcctgcaaca aggacagcgg ccagtggcac
2581 tactttgatg acaacagcgt ctcccctgtc aatgagaatc agatcgagtc caaggcagcc
2641 tatgtcctct tctaccaacg ccaggacgtg gcgcgacgcc tgctgtcccc ggccggctca
2701 tctggcgccc cagcctcccc tgcctgcagc tccccaccca gctctgagtt catggatgtt
2761 aattgagagc cctgggtcct gccacagaaa aaaaaaaaaa aaaaaa
//