LOCUS BC000335 2357 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens nucleoporin 88kDa, mRNA (cDNA clone MGC:8530 IMAGE:2822595), complete cds. ACCESSION BC000335 VERSION BC000335.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2357) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2357) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Nov 6, 2003 this sequence version replaced BC000335.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 1 Row: i Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24497452. FEATURES Location/Qualifiers source 1..2357 /db_xref="H-InvDB:HIT000029529" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:8530 IMAGE:2822595" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2357 /gene="NUP88" /gene_synonym="MGC8530" /db_xref="GeneID:4927" /db_xref="HGNC:HGNC:8067" /db_xref="MIM:602552" CDS 3..2228 /gene="NUP88" /gene_synonym="MGC8530" /codon_start=1 /product="nucleoporin 88kDa" /protein_id="AAH00335.1" /db_xref="GeneID:4927" /db_xref="HGNC:HGNC:8067" /db_xref="MIM:602552" /translation="MAAAEGPVGDGELWQTWLPNHVVFLRLREGLKNQSPTEAEKPAS SSLPSSPPPQLLTRNVVFGLGGELFLWDGEDSSFLVVRLRGPSGGGEEPALSQYQRLL CINPPLFEIYQVLLSPTQHHVALIGIKGLMVLELPKRWGKNSEFEGGKSTVNCSTTPV AERFFTSSTSLTLKHAAWYPSEILDPHVVLLTSDNVIRIYSLREPQTPTNVIILSEAE EESLVLNKGRAYTASLGETAVAFDFGPLAAVPKTLFGQNGKDEVVAYPLYILYENGET FLTYISLLHSPGNIGKLLGPLPMHPAAEDNYGYDACAVLCLPCVPNILVIATESGMLY HCVVLEGEEEDDHTSEKSWDSRIDLIPSLYVFECVELELALKLASGEDDPFDSDFSCP VKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELSTEQKCFVE HILCTKPLPCRQPAPIRGFWIVPDILGPTMICITSTYECLIWPLLSTVHPASPPLLCT REDVEVAESPLRVLAETPDSFEKHIRSILQRSVANPAFLKASEKDIAPPPEECLQLLS RATQVFREQYILKQDLAKEEIQRRVKLLCDQKKKQLEDLSYCREERKSLREMAERLAD KYEEAKEKQEDIMNRMKKLLHSFHSELPVLSDSERDMKKELQLIPDQLRHLGNAIKQV TMKKDYQQQKMEKVLSLPKPTIILSAYQRKCIQSILKEEGEHIREMVKQINDIRNHVN F" BASE COUNT 705 a 523 c 544 g 585 t ORIGIN 1 agatggcggc cgccgaggga ccggtgggcg acggcgagct gtggcagacc tggcttccta 61 accacgtcgt gttcttgcgg ctccgggagg gactgaaaaa ccagagtcca accgaagctg 121 agaaaccagc ttcttcgtcg ttgccttcgt cgccgccgcc gcagttgctg acgagaaacg 181 tggtctttgg cctcggcgga gagcttttcc tgtgggacgg agaagacagc tccttcttag 241 tcgttcgcct tcggggcccc agcggcggcg gcgaagagcc cgccctgtcc cagtaccaga 301 gattgctttg cataaatcca cccctgtttg aaatctatca agtcttgtta agcccaacac 361 aacatcatgt agcacttata ggaataaaag gacttatggt attagaatta cctaaaagat 421 gggggaagaa ttctgaattt gaaggtggaa aatcaacagt gaattgtagt accactccag 481 ttgcggagag atttttcacc agttccacct ctctgactct aaagcatgct gcatggtatc 541 caagtgaaat cctggatccc cacgtagtgc tgttaacatc agacaacgta atcagaattt 601 actcactacg tgagccgcag acacccacta acgtgataat actttcagaa gccgaagagg 661 aaagtctagt actcaataaa ggaagggcgt ataccgcatc tctaggagag acagcagttg 721 catttgactt tgggccattg gcagcagtcc caaagactct atttggacaa aacggcaaag 781 atgaagtagt ggcataccca ctgtacatct tatatgaaaa tggagagact ttcctgacat 841 acatcagtct gttacacagc cctggaaata ttggaaagct gttgggtcca ttgcccatgc 901 atcctgcggc tgaagataac tatggttatg atgcgtgtgc tgtactctgc ttaccctgtg 961 tccccaatat cttagtgatc gctactgaat caggaatgct gtatcactgt gtcgtgctag 1021 aaggggaaga agaagatgac cacacgtcag aaaagtcctg ggattccagg attgacctca 1081 ttccttctct gtatgtgttt gaatgtgttg agttggagct tgctttgaaa ctggcatctg 1141 gagaggatga cccttttgat tctgactttt cttgtccagt caaacttcat agagatccca 1201 agtgtccttc aagatatcac tgtactcatg aagctggtgt acatagtgtt gggctaactt 1261 ggattcataa acttcacaaa tttcttggat cagatgaaga agataaggat agtttacagg 1321 aactctctac agaacagaaa tgctttgttg aacacatcct ttgtacgaag ccattgccct 1381 gcaggcagcc agctccaatt cgaggatttt ggattgtacc tgacattctg ggacccacga 1441 tgatctgcat caccagtacc tatgaatgcc tcatatggcc gttattaagt acagtccatc 1501 cagcgtctcc tcccctgctt tgtactcgag aagatgttga agtggcagag tctcccctcc 1561 gtgttctggc tgaaacccca gattcctttg aaaagcatat tagaagcatt ttgcaacgta 1621 gtgttgccaa tccagcattt ttgaaagctt ctgaaaagga catagcccct cctcctgaag 1681 aatgccttca gctcctcagc agagccaccc aggtgttcag agagcagtac attctcaaac 1741 aggacttggc aaaggaggag attcagcgga gggtcaaatt attatgtgac caaaaaaaga 1801 aacaactaga agatctcagt tattgtcgag aagagaggaa aagtctgcgg gaaatggctg 1861 agcgtttagc tgacaaatat gaggaagcta aagaaaaaca agaggatatc atgaacagga 1921 tgaaaaaact acttcacagt tttcactctg agctcccagt tctctctgat agtgagcgag 1981 acatgaagaa agaattacag ctgatacctg atcaacttcg acatttgggc aatgccatca 2041 aacaggttac tatgaaaaag gattatcaac agcaaaagat ggagaaggtg ttgagtcttc 2101 caaaacccac cattattctc agtgcctacc agcgaaagtg cattcagtcc atcctgaaag 2161 aggagggtga acatataagg gaaatggtga agcaaatcaa tgatatccgc aatcatgtaa 2221 acttctgaca ccaccaggag ctgactcaca cctgaactga acaccattga aggcttaaac 2281 ccatattgta aaacaggtag aattatctaa tttataaaaa ggtgttttga tgacaaaaaa 2341 aaaaaaaaaa aaaaaaa //