LOCUS BC000304 2068 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens melanoma antigen family D, 2, mRNA (cDNA clone
MGC:8386 IMAGE:2820442), complete cds.
ACCESSION BC000304
VERSION BC000304.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2068)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2068)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000304.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: c Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29171703.
FEATURES Location/Qualifiers
source 1..2068
/db_xref="H-InvDB:HIT000029501"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8386 IMAGE:2820442"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2068
/gene="MAGED2"
/gene_synonym="11B6"
/gene_synonym="BCG1"
/gene_synonym="HCA10"
/gene_synonym="JCL-1"
/gene_synonym="MAGE-D2"
/gene_synonym="MAGED"
/gene_synonym="MGC8386"
/db_xref="GeneID:10916"
/db_xref="HGNC:HGNC:16353"
/db_xref="MIM:300470"
CDS 88..1908
/gene="MAGED2"
/gene_synonym="11B6"
/gene_synonym="BCG1"
/gene_synonym="HCA10"
/gene_synonym="JCL-1"
/gene_synonym="MAGE-D2"
/gene_synonym="MAGED"
/gene_synonym="MGC8386"
/codon_start=1
/product="melanoma antigen family D, 2"
/protein_id="AAH00304.1"
/db_xref="GeneID:10916"
/db_xref="HGNC:HGNC:16353"
/db_xref="MIM:300470"
/translation="MSDTSESGAGLTRFQAEASEKDSSSMMQTLLTVTQNVEVPETPK
ASKALEVSEDVKVSKASGVSKATEVSKTPEAREAPATQASSTTQLTDTQVLAAENKSL
AADTKKQNADPQAVTMPATETKKVSHVADTKVNTKAQETEAAPSQAPADEPEPESAAA
QSQENQDTRPKVKAKKARKVKHLDGEEDGSSDQSQASGTTGGRRVSKALMASMARRAS
RGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARRRAAKLQSSQEPEAPPPRDV
ALLQGRANDLVKYLLAKDQTKIPIKRSDMLKDIIKEYTDVYPEIIERAGYSLEKVFGI
QLKEIDKNDHLYILLSTLEPTDAGILGTTKDSPKLGLLMVLLSIIFMNGNRSSEAVIW
EVLRKLGLRPGIHHSLFGDVKKLITDEFVKQKYLDYARVPNSNPPEYEFFWGLRSYYE
TSKMKVLKFACKVQKKDPKEWAAQYREAMEADLKAAAEAAAEAKARAEIRARMGIGLG
SENAAGPCNWDEADIGPWAKARIQAGAEAKAKAQESGSASTGASTSTNNSASASASTS
GGFSAGASLTATLTFGLFAGLGGAGASTSGSSGACGFSYK"
BASE COUNT 549 a 525 c 582 g 412 t
ORIGIN
1 ccgagtttcg gaggggcttg gagtgagtgg acgcactcgg gaattgtagg aggacgaggc
61 tcagctcttg ccaggccaaa ttgagacatg tctgacacaa gcgagagtgg tgcaggtcta
121 actcgcttcc aggctgaagc ttcagaaaag gacagtagct cgatgatgca gactctgttg
181 acagtgaccc agaatgtgga ggtcccagag acaccgaagg cctcaaaggc actggaggtc
241 tcagaggatg tgaaggtctc aaaagcctct ggggtctcaa aggccacaga ggtctcaaag
301 accccagagg ctcgggaggc acctgccacc caggcctcat ctactactca gctgactgat
361 acccaggttc tggcagctga aaacaagagt ctagcagctg acaccaagaa acagaatgct
421 gacccgcagg ctgtgacaat gcctgccact gagaccaaaa aggtcagcca tgtggctgat
481 acaaaggtca atacaaaggc tcaggagact gaggctgcac cctctcaggc cccagcagat
541 gaacctgagc ctgagagtgc agctgcccag tctcaggaga atcaggatac tcggcccaag
601 gtcaaagcca agaaagcccg aaaggtgaag catctggatg gggaagagga tggcagcagt
661 gatcagagtc aggcttctgg aaccacaggt ggccgaaggg tctcaaaggc cctaatggcc
721 tcaatggccc gcagggcttc aaggggtccc atagcctttt gggcccgcag ggcatcaagg
781 actcggttgg ctgcttgggc ccggagagcc ttgctctccc tgagatcacc taaagcccgt
841 aggggcaagg ctcgccgtag agctgccaag ctccagtcat cccaagagcc tgaagcacca
901 ccacctcggg atgtggccct tttgcaaggg agggcaaatg atttggtgaa gtaccttttg
961 gctaaagacc agacgaagat tcccatcaag cgctcggaca tgctgaagga catcatcaaa
1021 gaatacactg atgtgtaccc cgaaatcatt gaacgagcag gctattcctt ggagaaggta
1081 tttgggattc aattgaagga aattgataag aatgaccact tgtacattct tctcagcacc
1141 ttagagccca ctgatgcagg catactggga acgactaagg actcacccaa gctgggtctg
1201 ctcatggtgc ttcttagcat catcttcatg aatggaaatc ggtccagtga ggctgtcatc
1261 tgggaggtgc tgcgcaagtt ggggctgcgc cctgggatac atcattcact ctttggggac
1321 gtgaagaagc tcatcactga tgagtttgtg aagcagaagt acctggacta tgccagagtc
1381 cccaatagca atccccctga atatgagttc ttctggggcc tgcgctctta ctatgagacc
1441 agcaagatga aagtcctcaa gtttgcctgc aaggtacaaa agaaggatcc caaggaatgg
1501 gcagctcagt accgagaggc gatggaagcg gatttgaagg ctgcagctga ggctgcagct
1561 gaagccaagg ctagggccga gattagagct cgaatgggca ttgggctcgg ctcggagaat
1621 gctgccgggc cctgcaactg ggacgaagct gatatcggac cctgggccaa agcccggatc
1681 caggcgggag cagaagctaa agccaaagcc caagagagtg gcagtgccag cactggtgcc
1741 agtaccagta ccaataacag tgccagtgcc agtgccagca ccagtggtgg cttcagtgct
1801 ggtgccagcc tgaccgccac tctcacattt gggctcttcg ctggccttgg tggagctggt
1861 gccagcacca gtggcagctc tggtgcctgt ggtttctcct acaagtgaga ttttagatat
1921 tgttaatcct gccagtcttt ctcttcaagc cagggtgcat cctcagaaac ctactcaaca
1981 cagcactcta ggcagccact atcaatcaat tgaagttgac actctgcatt aaatctattt
2041 gccatttcaa aaaaaaaaaa aaaaaaaa
//