LOCUS BC000290 2620 bp mRNA linear HUM 31-MAR-2005
DEFINITION Homo sapiens immunoglobulin mu binding protein 2, mRNA (cDNA clone
IMAGE:2819268), partial cds.
ACCESSION BC000290
VERSION BC000290.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2620)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2620)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 20, 2003 this sequence version replaced BC000290.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: a Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504622.
FEATURES Location/Qualifiers
source 1..2620
/db_xref="H-InvDB:HIT000085823"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2819268"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>2620
/gene="IGHMBP2"
/gene_synonym="CATF1"
/gene_synonym="HCSA"
/gene_synonym="SMARD1"
/gene_synonym="SMUBP2"
/db_xref="GeneID:3508"
/db_xref="MIM:600502"
CDS 16..>2620
/gene="IGHMBP2"
/gene_synonym="CATF1"
/gene_synonym="HCSA"
/gene_synonym="SMARD1"
/gene_synonym="SMUBP2"
/codon_start=1
/product="IGHMBP2 protein"
/protein_id="AAH00290.1"
/db_xref="GeneID:3508"
/db_xref="MIM:600502"
/translation="MASAAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRG
VCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLA
TGILTRVTQKSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHS
GPASSLIEVLFGRSAPSPASEIHPLTFFNTCLDTSQKEAVSFALSQKELAIIHGPPGT
GKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQ
QHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKERE
EAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKA
RKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMR
WASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQS
KGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPELEIKSVDG
FQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLK
TLVEYFTQHGEVRTAFEYLDDIVPENYSHENSQGSSHAATKPQGPAASTRTGSQRQEG
GQEAAAPARQGRKKPAGKSLASEAPSQPSLNGGSPEGVESQDGVDHFRAMIVEFMASK
KMQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKRAPRPRAALGPPAG
TGGPAPLQPVPPTPAQTEQPPREQRGPDQPDLRTLHLERLQRVRSAQGQPASKEQQAS
GQQKLPEKKKKK"
BASE COUNT 606 a 748 c 782 g 484 t
ORIGIN
1 aggccggcgg cggcgatggc ctcggcagct gtggagagct tcgtgaccaa gcaactggac
61 ctgctggagc tcgagagaga cgcggaggtg gaggagcgca ggtcctggca ggagaacatc
121 tctctgaaag agctccagag ccgaggcgtg tgtttgctga agctgcaggt atccagccag
181 cgcactgggc tgtacggacg gctgctggtc acctttgagc ccaggcgata cgggtccgcg
241 gcagctcttc ccagtaacag ctttacttct ggtgatatcg tgggcctgta cgatgctgct
301 aatgagggca gtcagctggc cactgggatc ttgacccggg tcacccagaa gtcggtcacg
361 gtggcctttg atgagtccca cgatttccag ttgagcttgg accgagagaa ttcctacaga
421 ctgttaaaac ttgccaatga tgtcacttac aggcgactga aaaaagccct gattgctcta
481 aagaagtatc attctggccc agcctcctca ctcatagaag tgctctttgg cagatctgct
541 cccagtcctg ccagtgaaat acacccgctg acattcttca acacctgcct ggacacctcc
601 cagaaagaag cggtttcatt tgcgctgtct cagaaagaac ttgccatcat ccatggacct
661 cctggcactg ggaaaaccac gactgtggtt gagatcattc ttcaagctgt gaaacaaggc
721 ttaaaggttc tgtgctgcgc cccctccaac atcgccgtgg acaatctggt ggagcgcctg
781 gctctgtgta agcagcggat tctgcgcctg ggacaccctg cccgcctcct ggagtccatt
841 cagcagcact ccctggatgc ggttttagcg cggagcgaca gtgcccagat tgttgcagat
901 atcaggaagg acatcgacca ggtctttgtg aaaaacaaaa agacccagga taagagagag
961 aaaagtaatt ttcgaaatga aattaagctg ttaagaaaag aactgaagga gagggaagaa
1021 gcagctatgc tcgagagcct cacttcggca aacgtggtcc ttgcaacaaa cacaggtgcg
1081 tctgccgatg gccccctgaa gttgctgccc gagagctact tcgacgtggt ggtcattgac
1141 gagtgtgccc aggccctcga ggcgagctgc tggatccccc tgctgaaggc cagaaagtgc
1201 atcctggcgg gcgatcacaa gcagctgccc cccaccacag tctctcacaa ggctgcgctg
1261 gcaggactgt cactcagcct gatggaacgc ctggctgagg agtacggcgc gagggtggtg
1321 cggacactga cggtgcagta ccgcatgcac caggctatca tgcgctgggc ctcagacacc
1381 atgtaccttg ggcagctcac agcccactct tccgtggcaa ggcacctcct gagggacctc
1441 ccaggtgtgg ctgccacaga agagacgggt gtgcccctgc tcttggtgga caccgccggc
1501 tgcgggctgt ttgagctgga ggaggaggac gaacagtcga aagggaaccc tggcgaagtc
1561 cgcctcgtca gtttgcacat ccaggctctg gtggacgctg gtgttccagc ccgtgacatt
1621 gctgtggtct cgccatacaa cctccaggtg gacctgctca gacagagcct tgtgcacagg
1681 caccctgagc ttgaaatcaa gtctgtcgat ggcttccaag gccgagagaa ggaggccgtg
1741 atactgtcct tcgtcagatc caacaggaaa ggtgaagttg gttttcttgc tgaggaccgg
1801 aggatcaacg tggctgtcac ccgtgcccga cgccacgtgg cggtcatctg tgactcccgt
1861 actgtcaaca accatgcatt tttgaagacc ctggtggagt atttcacaca gcatggggaa
1921 gtacgcacgg cctttgagta tcttgacgat attgtcccag aaaactattc ccatgagaac
1981 tcccagggtt ccagccacgc tgccaccaag ccccagggac ctgctgcgtc caccaggacc
2041 ggaagccagc ggcaggaggg aggccaggag gctgcagcac ctgccagaca gggccggaag
2101 aagccggctg ggaagtctct ggcctctgaa gctccatctc agcccagcct caacggaggc
2161 agcccagagg gagtggagag ccaagatggc gtggaccact tccgggccat gatagtggag
2221 ttcatggcca gcaagaagat gcagttggag tttcctcctt ccctcaattc ccacgacagg
2281 ctgcgggtcc accaaatagc cgaggagcac gggctgaggc acgacagttc tggggaaggg
2341 aagaggaggt tcatcactgt gagcaagagg gccccgcgac cccgagcagc cctgggaccc
2401 ccagcaggga ccggtggccc agcccctctc cagccagtgc cccctacccc tgcgcagaca
2461 gagcagcctc ccagggagca gcgtggccca gaccagcctg atctgaggac gctgcacctg
2521 gagagactgc agagggtcag gagcgcgcag gggcagcccg ccagcaagga gcagcaggcc
2581 tcagggcagc agaaacttcc agaaaaaaaa aaaaaaaaaa
//