LOCUS BC000185 2546 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens carnitine palmitoyltransferase 1A (liver), mRNA (cDNA
clone MGC:1772 IMAGE:3352642), complete cds.
ACCESSION BC000185
VERSION BC000185.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2546)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2546)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: c Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4503020.
FEATURES Location/Qualifiers
source 1..2546
/db_xref="H-InvDB:HIT000029416"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1772 IMAGE:3352642"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2546
/gene="CPT1A"
/gene_synonym="CPT1-L"
/gene_synonym="L-CPT1"
/db_xref="GeneID:1374"
/db_xref="HGNC:HGNC:2328"
/db_xref="MIM:600528"
CDS 46..2316
/gene="CPT1A"
/gene_synonym="CPT1-L"
/gene_synonym="L-CPT1"
/codon_start=1
/product="carnitine palmitoyltransferase 1A (liver)"
/protein_id="AAH00185.1"
/db_xref="GeneID:1374"
/db_xref="HGNC:HGNC:2328"
/db_xref="MIM:600528"
/translation="MAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFI
RFKNGIITGVYPASPSSWLIVVVGVMTTMYAKIDPSLGIIAKINRTLETANCMSSQTK
NVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGR
KPMLYSFQTSLPRLPVPAVKDTVNRYLQSVRPLMKEEDFKRMTALAQDFAVGLGPRLQ
WYLKLKSWWATNYVSDWWEEYIYLRGRGPLMVNSNYYAMDLLYILPTHIQAARAGNAI
HAILLYRRKLDREEIKPIRLLGSTIPLCSAQWERMFNTSRIPGEETDTIQHMRDSKHI
VVYHRGRYFKVWLYHDGRLLKPREMEQQMQRILDNTSEPQPGEARLAALTAGDRVPWA
RCRQAYFGRGKNKQSLDAVEKAAFFVTLDETEEGYRSEDPDTSMDSYAKSLLHGRCYD
RWFDKSFTFVVFKNGKMGLNAEHSWADAPIVAHLWEYVMSIDSLQLGYAEDGHCKGDI
NPNIPYPTRLQWDIPGECQEVIETSLNTANLLANDVDFHSFPFVAFGKGIIKKCRTSP
DAFVQLALQLAHYKDMGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPAQ
TVEQRLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPW
RLSTSQTPQQQVELFDLENNPEYVSSGGGFGPVADDGYGVSYILVGENLINFHISSKF
SCPETGIISQGPSSDT"
BASE COUNT 653 a 652 c 676 g 565 t
ORIGIN
1 gctgccgctg ccgcacctcc gtagctgact cggtactctc tgaagatggc agaagctcac
61 caagctgtgg cctttcagtt cacggtcact ccggacggga ttgacctgcg gctgagccat
121 gaagctctta gacaaatcta tctctctgga cttcattcct ggaaaaagaa gttcatcaga
181 ttcaagaacg gcatcatcac tggcgtgtac ccggcaagcc cctccagttg gcttatcgtg
241 gtggtgggcg tgatgacaac gatgtacgcc aagatcgacc cctcgttagg aataattgca
301 aaaatcaatc ggactctgga aacggccaac tgcatgtcca gccagacgaa gaacgtggtc
361 agcggcgtgc tgtttggcac cggcctgtgg gtggccctca tcgtcaccat gcgctactcc
421 ctgaaagtgc tgctctccta ccacgggtgg atgttcactg agcacggcaa gatgagtcgt
481 gccaccaaga tctggatggg tatggtcaag atcttttcag gccgaaaacc catgttgtac
541 agcttccaga catcgctgcc tcgcctgccg gtcccggctg tcaaagacac tgtgaacagg
601 tatctacagt cggtgaggcc tcttatgaag gaagaagact tcaaacggat gacagcactt
661 gctcaagatt ttgctgtcgg tcttggacca agattacagt ggtatttgaa gttaaaatcc
721 tggtgggcta caaattacgt gagcgactgg tgggaggagt acatctacct ccgaggacga
781 gggccgctca tggtgaacag caactattat gccatggatc tgctgtatat ccttccaact
841 cacattcagg cagcaagagc cggcaacgcc atccatgcca tcctgcttta caggcgcaaa
901 ctggaccggg aggaaatcaa accaattcgt cttttgggat ccacgattcc actctgctcc
961 gctcagtggg agcggatgtt taatacttcc cggatcccag gagaggagac agacaccatc
1021 cagcacatga gagacagcaa gcacatcgtc gtgtaccatc gaggacgcta cttcaaggtc
1081 tggctctacc atgatgggcg gctgctgaag ccccgggaga tggagcagca gatgcagagg
1141 atcctggaca atacctcgga gcctcagccc ggggaggcca ggctggcagc cctcaccgca
1201 ggagacagag ttccctgggc caggtgtcgt caggcctatt ttggacgtgg gaaaaataag
1261 cagtctcttg atgctgtgga gaaagcagcg ttcttcgtga cgttagatga aactgaagaa
1321 ggatacagaa gtgaagaccc ggatacgtca atggacagct acgccaaatc tctactacac
1381 ggccgatgtt acgacaggtg gtttgacaag tcgttcacgt ttgttgtctt caaaaacggg
1441 aagatgggcc tcaacgctga acactcctgg gcagatgcgc cgatcgtggc ccacctttgg
1501 gagtacgtca tgtccattga cagcctccag ctgggctatg cggaggatgg gcactgcaaa
1561 ggcgacatca atccgaacat tccgtacccc accaggctgc agtgggacat cccgggggaa
1621 tgtcaagagg ttatagagac ctccctgaac accgcaaatc ttctggcaaa cgacgtggat
1681 ttccattcct tcccattcgt agcctttggt aaaggaatca tcaagaaatg tcgcacgagc
1741 ccagacgcct ttgtgcagct ggccctccag ctggcgcact acaaggacat gggcaagttt
1801 tgcctcacat acgaggcctc catgacccgg ctcttccgag aggggaggac ggagaccgtg
1861 cgctcctgca ccactgagtc atgcgacttc gtgcgggcca tggtggaccc ggcccagacg
1921 gtggaacaga ggctgaagtt gttcaagttg gcgtctgaga agcatcagca tatgtatcgc
1981 ctcgccatga ccggctctgg gatcgatcgt cacctcttct gcctttacgt ggtgtctaaa
2041 tatctcgctg tggagtcccc tttccttaag gaagttttat ctgagccttg gagattatca
2101 acaagccaga cccctcagca gcaagtggag ctgtttgact tggagaataa cccagagtac
2161 gtgtccagcg gagggggctt tggaccggtt gctgatgacg gctatggtgt gtcgtacatc
2221 cttgtgggag agaacctcat caatttccac atttcttcca agttctcttg ccctgagacg
2281 gggattataa gtcaaggacc aagttcagat acttgagaca aagtggaaag tctcagcata
2341 tggaaacaag gccttggagg agaccatgga catcaccaag ttcatgtgct gggctggaaa
2401 gaaaagcctg ttgattttca cttgctgtgc atttattcat ccattccatt gcctcaatgc
2461 tgagaacagt gcctgacaca taaaagatgc tcaataaata tgttaaaagt aaaaaaaaaa
2521 aaaaaaaaaa aaaaaaaaaa aaaaaa
//