LOCUS BC000176 1975 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens RAP1B, member of RAS oncogene family, mRNA (cDNA clone
MGC:5214 IMAGE:2900837), complete cds.
ACCESSION BC000176
VERSION BC000176.3
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1975)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1975)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC000176.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: c Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 58219793.
FEATURES Location/Qualifiers
source 1..1975
/db_xref="H-InvDB:HIT000029407"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5214 IMAGE:2900837"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1975
/gene="RAP1B"
/gene_synonym="DKFZP586H0723"
/gene_synonym="K-REV"
/gene_synonym="RAL1B"
/db_xref="GeneID:5908"
/db_xref="HGNC:HGNC:9857"
/db_xref="MIM:179530"
CDS 136..690
/gene="RAP1B"
/gene_synonym="DKFZP586H0723"
/gene_synonym="K-REV"
/gene_synonym="RAL1B"
/codon_start=1
/product="RAP1B, member of RAS oncogene family"
/protein_id="AAH00176.1"
/db_xref="GeneID:5908"
/db_xref="HGNC:HGNC:9857"
/db_xref="MIM:179530"
/translation="MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV
EVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILR
VKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYD
LVRQINRKTPVPGKARKKSSCQLL"
BASE COUNT 614 a 327 c 410 g 624 t
ORIGIN
1 agcggcgcgg cagcggcagg accgccgtgg cgcctagagt agcgacccgg ggggagcgcg
61 gggcgacgct ggctgcaggg acccggtgac agcgtgagag gttcgcagag tactaggttt
121 tgacaagctt gcatcatgcg tgagtataag ctagtcgttc ttggctcagg aggcgttgga
181 aagtctgctt tgactgtaca atttgttcaa ggaatttttg tagaaaaata cgatcctacg
241 atagaagatt cttatagaaa gcaagttgaa gtagatgcac aacagtgtat gcttgaaatc
301 ttggatactg caggaacgga gcaatttaca gcaatgaggg atttatacat gaaaaatgga
361 caaggatttg cattagttta ttccatcaca gcacagtcca catttaacga tttacaagac
421 ctgagagaac agattcttcg agttaaagac actgatgatg ttccaatgat tcttgttggt
481 aataagtgtg acttggaaga tgaaagagtt gtagggaagg aacaaggtca aaatctagca
541 agacaatgga acaactgtgc attcttagaa tcttctgcaa aatcaaaaat aaatgttaat
601 gagatctttt atgacctagt gcggcaaatt aacagaaaaa ctccagtgcc tgggaaggct
661 cgcaaaaagt catcatgtca gctgctttaa tatactaaat gcattgtagc tctgagccag
721 gtctgaagaa ctgttgccca attcaacagt gccagcattc caactttgtt aaacctacca
781 acatcttaaa tggactttcc tgtggtggta ccctttaaga ggcggatgaa agctactata
841 tcagtttgca cattctaatc actttccagt atcacaagag agatttttac ttatataata
901 gtcctagagt ttgcagctgg taaaaccaga ggctacatcc agtattactg ctaagagaca
961 ttcttcatcc accaatgttg tacatgtatg aaaatggtgt actgtatact ttaacatgcc
1021 ccatactttg tattggagag tacaataatg taaatcctaa aagcaccact attttagcat
1081 aataaaagaa agtccaaaga gctcctatat agactactcc agataacttc gcttctttga
1141 tacttgtagc ttattgtaat tttttttaag aaattcaagg tcattattat tgtacaaaat
1201 aagcgctttg attaacacag ctatatagtt tttttaattt ttaaaaaacc tgtggagacg
1261 gtgatcttgt ctttaaaaca tgatagtcct ttcagtataa tgtcttagat taaagacgtt
1321 gcctttaata tctgttggga aggaaatgtc cagacttttc aaatctctta ttatatgttt
1381 cctttttttg tttacatagg gaacaatgtt tatagtcgtg tgtacagtgg gggtctacaa
1441 caagaagtgt atattttcaa acaatttttt aatgatttaa caatttttgt aaatcatttt
1501 caggcttctg cagctgtaga ttctcactgt gaatcccttg cttgctcatg cataagtgta
1561 tttgcaatac caaatataca ggtttagtat ttttgcctgt tagtgattgt ttcacatgtg
1621 taacgttttg gttgagatgt taaatggtgg acgagtactg tggatgtgaa tgtgggaagt
1681 aattttaatc atatgtaatt ggtcacaagg cctaatttgc agtaactatt gctgttttat
1741 ttaacaatgc cttgttgctt tgtatgcatt aatgtttgga tgtaaagatt gtgtgtctat
1801 ccaacaggga gccacagtat ttaaattgac caacctaatg ttacaactac tttgaggtgg
1861 ccaaatgtaa actaaaagcc ttaattaaag tggtgcaatt ttgtataact tagcatcagt
1921 agttcaataa atttggattg ccatgcaagg gcttgcatta taaaaaaaaa aaaaa
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