LOCUS BC000172 1806 bp mRNA linear HUM 30-SEP-2003 DEFINITION Homo sapiens aryl hydrocarbon receptor nuclear translocator-like 2, mRNA (cDNA clone IMAGE:3445178), partial cds. ACCESSION BC000172 VERSION BC000172.3 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1806) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1806) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Sep 16, 2003 this sequence version replaced BC000172.2. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 3 Row: d Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 19923556. FEATURES Location/Qualifiers source 1..1806 /db_xref="H-InvDB:HIT000029405" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3445178" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_10" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..1806 /gene="ARNTL2" /gene_synonym="BMAL2" /gene_synonym="CLIF" /gene_synonym="MOP9" /db_xref="GeneID:56938" CDS <1..1737 /gene="ARNTL2" /gene_synonym="BMAL2" /gene_synonym="CLIF" /gene_synonym="MOP9" /codon_start=1 /product="ARNTL2 protein" /protein_id="AAH00172.3" /db_xref="GeneID:56938" /translation="GKVLREENQCIAPVVSSRVSPGTRPTAMGSFSSHMTEFPRKRKG SDSDPSQEAHSQTEKRRRDKMNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLRSL KGLTNSYVGSNYRPSFLQDNELRHLILKTAEGFLFVVGCERGKILFVSKSVSKILNYD QASLTGQSLFDFLHPKDVAKVKEQLSSFDISPREKLIDAKTGLQVHSNLHAGRTRVYS GSRRSFFCRIKSCKISVKEEHGCLPNSKKKEHRKFYTIHCTGYLRSWPPNIVGMEEER NSKKDNSNFTCLVAIGRLQPYIVPQNSGEINVKPTEFITRFAVNGKFVYVDQRATAIL GYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVTLKSQ WFSFTNPWTKELEYIVSVNTLVLGHSEPGEASFLPCSSQSSEESSRQSCMSVPGMSTG TVLGAGSIGTDIANEILDLQRLQSSSYLDDSSPTGLMKDTHTVNCRSMSNKELFPPSP SEMGELEATRQNQSTVAVHSHEPLLSDGAQLDFDALCDNDDTAMAAFMNYLEAEGGLG DPGDFSDIQWTL" misc_feature 154..309 /gene="ARNTL2" /gene_synonym="BMAL2" /gene_synonym="CLIF" /gene_synonym="MOP9" /note="HLH; Region: Helix-loop-helix DNA-binding domain" /db_xref="CDD:pfam00010" misc_feature 367..555 /gene="ARNTL2" /gene_synonym="BMAL2" /gene_synonym="CLIF" /gene_synonym="MOP9" /note="PAS; Region: PAS domain" /db_xref="CDD:smart00091" misc_feature 934..1101 /gene="ARNTL2" /gene_synonym="BMAL2" /gene_synonym="CLIF" /gene_synonym="MOP9" /note="PAS; Region: PAS domain" /db_xref="CDD:smart00091" BASE COUNT 591 a 337 c 386 g 492 t ORIGIN 1 ggtaaagtgt tgagagagga gaaccagtgc attgctcctg tggtttccag ccgcgtgagt 61 ccagggacaa gaccaacagc tatggggtct ttcagctcac acatgacaga gtttccacga 121 aaacgcaaag gaagtgattc agacccatcc caagaagctc atagccaaac tgaaaagcgg 181 aggagagata aaatgaataa cctgattgaa gaactgtctg caatgatccc tcagtgcaac 241 cccatggcgc gtaaactgga caaacttaca gttttaagaa tggctgttca acacttgaga 301 tctttaaaag gcttgacaaa ttcttatgtg ggaagtaatt atagaccatc atttcttcag 361 gataatgagc tcagacattt aatccttaag actgcagaag gcttcttatt tgtggttgga 421 tgtgaaagag gaaaaattct cttcgtttct aagtcagtct ccaaaatact taattatgat 481 caggctagtt tgactggaca aagcttattt gacttcttac atccaaaaga tgttgccaaa 541 gtaaaggaac aactttcttc ttttgatatt tcaccaagag aaaagctaat agatgccaaa 601 actggtttgc aagttcacag taatctccac gctggaagga cacgtgtgta ttctggctca 661 agacgatctt ttttctgtcg gataaagagt tgtaaaatct ctgtcaaaga agagcatgga 721 tgcttaccca actcaaagaa gaaagagcac agaaaattct atactatcca ttgcactggt 781 tacttgagaa gctggcctcc aaatattgtt ggaatggaag aagaaaggaa cagtaagaaa 841 gacaacagta attttacctg ccttgtggcc attggaagat tacagccata tattgttcca 901 cagaacagtg gagagattaa tgtgaaacca actgaattta taacccggtt tgcagtgaat 961 ggaaaatttg tctatgtaga tcaaagggca acagcgattt taggatatct gcctcaggaa 1021 cttttgggaa cttcttgtta tgaatatttt catcaagatg accacaataa tttgactgac 1081 aagcacaaag cagttctaca gagtaaggag aaaatactta cagattccta caaattcaga 1141 gcaaaagatg gctcttttgt aactttaaaa agccaatggt ttagtttcac aaatccttgg 1201 acaaaagaac tggaatatat tgtatctgtc aacactttag ttttgggaca tagtgagcct 1261 ggagaagcat catttttacc ttgtagctct caatcatcag aagaatcctc tagacagtcc 1321 tgtatgagtg tacctggaat gtctactgga acagtacttg gtgctggtag tattggaaca 1381 gatattgcaa atgaaattct ggatttacag aggttacagt cttcttcata ccttgatgat 1441 tcgagtccaa caggtttaat gaaagatact catactgtaa actgcaggag tatgtcaaat 1501 aaggagttgt ttccaccaag tccttctgaa atgggggagc tagaggctac caggcaaaac 1561 cagagtactg ttgctgtcca cagccatgag ccactcctca gtgatggtgc acagttggat 1621 ttcgatgccc tatgtgacaa tgatgacaca gccatggctg catttatgaa ttacttagaa 1681 gcagaggggg gcctgggaga ccctggggac ttcagtgaca tccagtggac cctctagcct 1741 ttgattttta actccaaaaa tgagaaacat tttaaagcat ttcatttacg aaaaaaaaaa 1801 aaaaaa //