LOCUS BC000112 1934 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens retinol dehydrogenase 11 (all-trans/9-cis/11-cis),
mRNA (cDNA clone MGC:704 IMAGE:3504920), complete cds.
ACCESSION BC000112
VERSION BC000112.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1934)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1934)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: i Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20070271.
FEATURES Location/Qualifiers
source 1..1934
/db_xref="H-InvDB:HIT000029354"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:704 IMAGE:3504920"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1934
/gene="RDH11"
/gene_synonym="ARSDR1"
/gene_synonym="CGI-82"
/gene_synonym="FLJ32633"
/gene_synonym="HCBP12"
/gene_synonym="MDT1"
/gene_synonym="PSDR1"
/gene_synonym="RALR1"
/gene_synonym="SCALD"
/db_xref="GeneID:51109"
/db_xref="HGNC:HGNC:17964"
/db_xref="MIM:607849"
CDS 8..964
/gene="RDH11"
/gene_synonym="ARSDR1"
/gene_synonym="CGI-82"
/gene_synonym="FLJ32633"
/gene_synonym="HCBP12"
/gene_synonym="MDT1"
/gene_synonym="PSDR1"
/gene_synonym="RALR1"
/gene_synonym="SCALD"
/codon_start=1
/product="retinol dehydrogenase 11
(all-trans/9-cis/11-cis)"
/protein_id="AAH00112.1"
/db_xref="GeneID:51109"
/db_xref="HGNC:HGNC:17964"
/db_xref="MIM:607849"
/translation="MVELMFPLLLLLLPFLLYMAAPQIRKMLSSGVCTSTVQLPGKVV
VVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLS
DTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLL
LEKLKESAPSRIVNVSSLAHHLGRIHFHNLQGEKFYNAGLAYCHSKLANILFTQELAR
RLKGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSFFIKTPQQGAQTSLHCALTEGL
EILSGNHFSDCHVAWVSAQARNETIARRLWDVSCDLLGLPID"
BASE COUNT 586 a 433 c 450 g 465 t
ORIGIN
1 ggcagagatg gttgagctca tgttcccgct gttgctcctc cttctgccct tccttctgta
61 tatggctgcg ccccaaatca ggaaaatgct gtccagtggg gtgtgtacat caactgttca
121 gcttcctggg aaagtagttg tggtcacagg agctaataca ggtatcggga aggagacagc
181 caaagagctg gctcagagag gagctcgagt atatttagct tgccgggatg tggaaaaggg
241 ggaattggtg gccaaagaga tccagaccac gacagggaac cagcaggtgt tggtgcggaa
301 actggacctg tctgatacta agtctattcg agcttttgct aagggcttct tagctgagga
361 aaagcacctc cacgttttga tcaacaatgc aggagtgatg atgtgtccgt actcgaagac
421 agcagatggc tttgagatgc acataggagt caaccacttg ggtcacttcc tcctaaccca
481 tctgctgcta gagaaactaa aggaatcagc cccatcaagg atagtaaatg tgtcttccct
541 cgcacatcac ctgggaagga tccacttcca taaccttcag ggcgagaaat tctacaatgc
601 aggcctggcc tactgtcaca gcaagctagc caacatcctc ttcacccagg aactggcccg
661 gagactaaaa ggctctggcg ttacgacgta ttctgtacac cctggcacag tccaatctga
721 actggttcgg cactcatctt tcatgagatg gatgtggtgg cttttctcct ttttcatcaa
781 gactcctcag cagggagccc agaccagcct gcactgtgcc ttaacagaag gtcttgagat
841 tctaagtggg aatcatttca gtgactgtca tgtggcatgg gtctctgccc aagctcgtaa
901 tgagactata gcaaggcggc tgtgggacgt cagttgtgac ctgctgggcc tcccaataga
961 ctaacaggca gtgccagttg gacccaagag aagactgcag cagactacac agtacttctt
1021 gtcaaaatga ttctccttca aggttttcaa aacctttagc acaaagagag caaaaccttc
1081 cagccttgcc tgcttggtgt ccagttaaaa ctcagtgtac tgccagattc gtctaaatgt
1141 ctgtcatgtc cagatttact ttgcttctgt tactgccaga gttactagag atatcataat
1201 aggataagaa gaccctcata tgacctgcac agctcatttt ccttctgaaa gaaactacta
1261 cctaggagaa tctaagctat agcagggatg atttatgcaa atttgaacta gcttctttgt
1321 tcacaattca gttcctccca accaaccagt cttcacttca agagggccac actgcaacct
1381 cagcttaaca tgaataacaa agactggctc aggagcaggg cttgcccagg catggtggat
1441 caccggaggt cagtagttca agaccagcct ggccaacatg gtgaaacccc acctctacta
1501 aaaattgtgt atatctttgt gtgtcttcct gtttatgtgt gccaagggag tattttcaca
1561 aagttcaaaa cagccacaat aatcagagat ggagcaaacc agtgccatcc agtctttatg
1621 caaatgaaat gctgcaaagg gaagcagatt ctgtatatgt tggtaactac ccaccaagag
1681 cacatgggta gcagggaaga agtaaaaaaa agagaaggag aatactggaa gataatgcac
1741 aaaatgaagg gactagttaa ggattaacta gccctttaag gattaactag ttaaggatta
1801 atagcaaaag atattaaata tgctaacata gctatggagg aattgagggc aagcacccag
1861 gactgatgag gtcttaacaa aaaccagtgt ggcaaaaaaa aaaaaaaaaa aaaaaaaaaa
1921 aaaaaaaaaa aaaa
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