LOCUS BC000038 1576 bp mRNA linear HUM 19-JUN-2006 DEFINITION Homo sapiens sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase), mRNA (cDNA clone MGC:1617 IMAGE:3509845), complete cds. ACCESSION BC000038 VERSION BC000038.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1576) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1576) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC000038.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 7 Row: j Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4507094. FEATURES Location/Qualifiers source 1..1576 /db_xref="H-InvDB:HIT000029300" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1617 IMAGE:3509845" /tissue_type="Brain, neuroblastoma" /clone_lib="NIH_MGC_19" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1576 /gene="SMPD2" /gene_synonym="NSMASE" /db_xref="GeneID:6610" /db_xref="HGNC:HGNC:11121" /db_xref="MIM:603498" CDS 267..1538 /gene="SMPD2" /gene_synonym="NSMASE" /codon_start=1 /product="sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase)" /protein_id="AAH00038.1" /db_xref="GeneID:6610" /db_xref="HGNC:HGNC:11121" /db_xref="MIM:603498" /translation="MKPNFSLRLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDL ALLEEVWSEQDFQYLRQKLSPTYPAAHHFRSGIIGSGLCVFSKHPIQELTQHIYTLNG YPYMIHHGDWFSGKAVGLLVLHLSGMVLNAYVTHLHAEYNRQKDIYLAHRVAQAWELA QFIHHTSKKADVVLLCGDLNMHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVP KNCYVSQQELKPFPFGVRIDYVLYKAVSGFYISCKSFETTTGFDPHSGTPLSDHEALM ATLFVRHSPPQQNPSSTHGPAERSPLMCVLKEAWTELGLGMAQARWWATFASYVIGLG LLLLALLCVLAAGGGAGEAAILLWTPSVGLVLWAGAFYLFHVQEVNGLYRAQAELQHV LGRAREAQDLGPEPQPALLLGQQEGDRTKEQ" BASE COUNT 337 a 462 c 464 g 313 t ORIGIN 1 ggcccttacc gagcctgggc gcccggattt cggcagcgga tcgcctttcc gggttggcgg 61 cccgcctgat tgggaacagc cggccggttg ccgggggaac gcgggagtcg ggcccgacct 121 gagccacgcg ggcttggtgc ccacctgtgc gcgccgcctg cgaagaagga acggtctagg 181 gagaaggcgc cgccggccgc ccccgtcccc accgcggccg tcgctggaga gttcgagccg 241 cctagcgccc ctggagctcc ccaaccatga agcccaactt ctccctgcga ctgcggatct 301 tcaacctcaa ctgctggggc attccgtact tgagcaagca ccgggccgac cgcatgaggc 361 gcctgggaga ctttctgaac caggagagct tcgacctggc tttgctggag gaggtgtgga 421 gtgagcagga cttccagtac ctgagacaga agctgtcacc tacctaccca gctgcacacc 481 acttccggag cggaatcatt ggcagtggcc tctgtgtctt ctccaaacat ccaatccagg 541 agcttaccca gcacatctac actctcaatg gctaccccta catgatccat catggtgact 601 ggttcagtgg gaaggctgtg gggctgctgg tgctccatct aagtggcatg gtgctcaacg 661 cctatgtgac ccatctccat gccgaataca atcgacagaa ggacatctac ctagcacatc 721 gtgtggccca agcttgggaa ttggcccagt tcatccacca cacatccaag aaggcagacg 781 tggttctgtt gtgtggagac ctcaacatgc acccagaaga cctgggctgc tgcctgctga 841 aggagtggac agggcttcat gatgcctatc ttgaaactcg ggacttcaag ggctctgagg 901 aaggcaacac aatggtaccc aagaactgct acgtcagcca gcaggagctg aagccatttc 961 cctttggtgt ccgcattgac tacgtgcttt acaaggcagt ttctgggttt tacatctcct 1021 gtaagagttt tgaaaccact acaggctttg accctcacag tggcaccccc ctctctgatc 1081 atgaagccct gatggctact ctgtttgtga ggcacagccc cccacagcag aaccccagct 1141 ctacccacgg accagcagag aggtcgccgt tgatgtgtgt gctaaaggag gcctggacgg 1201 agctgggtct gggcatggct caggctcgct ggtgggccac cttcgctagc tatgtgattg 1261 gcctggggct gcttctcctg gcactgctgt gtgtcctggc ggctggagga ggggccgggg 1321 aagctgccat actgctctgg acccccagtg tagggctggt gctgtgggca ggtgcattct 1381 acctcttcca cgtacaggag gtcaatggct tatatagggc ccaggctgag ctccagcatg 1441 tgctaggaag ggcaagggag gcccaggatc tgggcccaga gcctcagcca gccctactcc 1501 tggggcagca ggagggggac agaactaaag aacaataaag cttggccctt taaaaaaaaa 1561 aaaaaaaaaa aaaaaa //