LOCUS BC000037 1596 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DNA fragmentation factor, 45kDa, alpha polypeptide,
mRNA (cDNA clone MGC:1515 IMAGE:3505817), complete cds.
ACCESSION BC000037
VERSION BC000037.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1596)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1596)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC000037.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: n Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47132578.
FEATURES Location/Qualifiers
source 1..1596
/db_xref="H-InvDB:HIT000029299"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1515 IMAGE:3505817"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1596
/gene="DFFA"
/gene_synonym="DFF-45"
/gene_synonym="DFF1"
/gene_synonym="ICAD"
/db_xref="GeneID:1676"
/db_xref="HGNC:HGNC:2772"
/db_xref="MIM:601882"
CDS 19..1014
/gene="DFFA"
/gene_synonym="DFF-45"
/gene_synonym="DFF1"
/gene_synonym="ICAD"
/codon_start=1
/product="DNA fragmentation factor, 45kDa, alpha
polypeptide"
/protein_id="AAH00037.1"
/db_xref="GeneID:1676"
/db_xref="HGNC:HGNC:2772"
/db_xref="MIM:601882"
/translation="MEVTGDAGVPESGEIRTLKPCLLRRNYSREQHGVAASCLEDLRS
KACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNEKWAYNNSDGG
TAWISQESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEEDLQMLVDAPCSDLAQE
LRQSCATVQRLQHTLQQVLDQREEVRQSKQLLQLYLQALEKEGSLLSKQEESKAAFGE
EVDAVDTGISRETSSDVALASHILTALREKQAPELSLSSQDLELVTKEDPKALAVALN
WDIKKTETVQEACERELALRLQQTQSLHSLRSISASKASPPGDLQNPKRARQDPT"
BASE COUNT 410 a 416 c 440 g 330 t
ORIGIN
1 ggtcccacct tgtggaggat ggaggtgacc ggggacgccg gggtaccaga atctggcgag
61 atccggactc taaagccgtg tctgctgcgc cgcaactaca gccgcgaaca gcacggcgtg
121 gccgcctcct gcctcgaaga cctgaggagc aaggcctgtg acattctggc cattgataag
181 tccctgacac cagtcaccct ggtcctggca gaggatggca ccatagtgga tgatgacgat
241 tactttctgt gtctaccttc caatactaag tttgtggcat tggctagtaa tgagaaatgg
301 gcatacaaca attcagatgg aggtacagct tggatttccc aagagtcctt tgatgtagat
361 gaaacagaca gcggggcagg gttgaagtgg aagaatgtgg ccaggcagct gaaagaagat
421 ctgtccagca tcatcctcct atcagaggag gacctccaga tgcttgttga cgctccctgc
481 tcagacctgg ctcaggaact acgtcagagt tgtgccaccg tccagcggct gcagcacaca
541 ctccaacagg tgcttgacca aagagaggaa gtgcgtcagt ccaagcagct cctgcagctg
601 tacctccagg ctttggagaa agagggcagc ctcttgtcaa agcaggaaga gtccaaagct
661 gcctttggtg aggaggtgga tgcagtagac acgggtatca gcagagagac ctcctcggac
721 gttgcgctgg cgagccacat ccttactgca ctgagggaga agcaggctcc agagctgagc
781 ttatctagtc aggatttgga gttggttacc aaggaagacc ccaaagcact ggctgttgcc
841 ttgaactggg acataaagaa gacggagact gttcaggagg cctgtgagcg ggagctcgcc
901 ctgcgcctgc agcagacgca gagcttgcat tctctccgga gcatctcagc aagcaaggcc
961 tcaccacctg gtgacctgca gaatcctaag cgagccagac aggatcccac atagcagcag
1021 cgggaagtgt gccaaggaag ctctgtggcg ttgtgttatt ggtagacacc ctcagcctca
1081 tcatttgact acctatgtac tactctaccc cctgccttag agcaccttcc agagaagcta
1141 ttccaggtct caacatacgc cgttccacca attttttttt tagccccacc agcttcagga
1201 cttctgccaa ttttgaatga tatagctgca ccaacaatat cccgcctcct ctaattacat
1261 atgatgttct ctgttcaaaa gtaattggca gtgattggcc aggcgcagtg gctcacgcct
1321 gtaatcccag cactgggagg ccgagggggg cggatcgtga agtcaggaga tcgagaccat
1381 cctggctaac atggtgaaac cctgtctcta ctaaaaatac aaaaaaaatt agccagccat
1441 ggtggcgggc gcctgtaatc ccagctactt gggaggctga ggcaggagaa tggcatgaac
1501 ctgggaggca gagcttgcag tgagctgaga ttgcgccact gcactccagc ctgggcaaca
1561 gagcgagact ccgtctcaaa aaaaaaaaaa aaaaaa
//