LOCUS BC000035 2477 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens zinc finger, DHHC-type containing 9, mRNA (cDNA clone
MGC:845 IMAGE:3506601), complete cds.
ACCESSION BC000035
VERSION BC000035.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2477)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2477)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC000035.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: a Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56682973.
FEATURES Location/Qualifiers
source 1..2477
/db_xref="H-InvDB:HIT000029297"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:845 IMAGE:3506601"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2477
/gene="ZDHHC9"
/gene_synonym="CGI-89"
/gene_synonym="DHHC9"
/gene_synonym="ZNF379"
/db_xref="GeneID:51114"
/db_xref="HGNC:HGNC:18475"
CDS 337..1431
/gene="ZDHHC9"
/gene_synonym="CGI-89"
/gene_synonym="DHHC9"
/gene_synonym="ZNF379"
/codon_start=1
/product="zinc finger, DHHC-type containing 9"
/protein_id="AAH00035.1"
/db_xref="GeneID:51114"
/db_xref="HGNC:HGNC:18475"
/translation="MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFL
ILGTCTLFFAFECRYLAVQLSPAIPVFAAMLFLFSMATLLRTSFSDPGVIPRALPDEA
AFIEMEIEATNGAVPQGQRPPPRIKNFQINNQIVKLKYCYTCKIFRPPRASHCSICDN
CVERFDHHCPWVGNCVGKRNYRYFYLFILSLSLLTIYVFAFNIVYVALKSLKIGFLET
LKETPGTVLEVLICFFTLWSVVGLTGFHTFLVALNQTTNEDIKGSWTGKNRVQNPYSH
GNIVKNCCEVLCGPLPPSVLDRRGILPLEESGSRPPSTQETSSSLLPQSPAPTEHLNS
NEMPEDSSTPEEMPPPEPPEPPQEAAEAEK"
BASE COUNT 561 a 685 c 582 g 649 t
ORIGIN
1 gcgtggcgga gtcagggcgg gcctcgagag gccgcgcccg cggctcggcc ccggactccg
61 gcctccggcc tccggccccc cgctggggag ccggtcgctg cttcccgacg gattttgatc
121 tttgttcttc caggccggct cccccttcct ggtctccctt ctcccgctgg gccggtttat
181 cgggaggaga ttgtcttcca gggctagcaa ttggactttt gatgatgttt gacccagcgg
241 caggaatagc aggcaacgtg atttcaaagc tgggctcagc ctctgtttct tctctcgtgt
301 aatcgcaaaa cccattttgg agcaggaatt ccaatcatgt ctgtgatggt ggtgagaaag
361 aaggtgacac ggaaatggga gaaactccca ggcaggaaca ccttttgctg tgatggccgc
421 gtcatgatgg cccggcaaaa gggcattttc tacctgaccc ttttcctcat cctggggaca
481 tgtacactct tcttcgcctt tgagtgccgc tacctggctg ttcagctgtc tcctgccatc
541 cctgtatttg ctgccatgct cttccttttc tccatggcta cactgttgag gaccagcttc
601 agtgaccctg gagtgattcc tcgggcgcta ccagatgaag cagctttcat agaaatggag
661 atagaagcta ccaatggtgc ggtgccccag ggccagcgac caccgcctcg tatcaagaat
721 ttccagataa acaaccagat tgtgaaactg aaatactgtt acacatgcaa gatcttccgg
781 cctccccggg cctcccattg cagcatctgt gacaactgtg tggagcgctt cgaccatcac
841 tgcccctggg tggggaattg tgttggaaag aggaactacc gctacttcta cctcttcatc
901 ctttctctct ccctcctcac aatctatgtc ttcgccttca acatcgtcta tgtggccctc
961 aaatctttga aaattggctt cttggagaca ttgaaagaaa ctcctggaac tgttctagaa
1021 gtcctcattt gcttctttac actctggtcc gtcgtgggac tgactggatt tcatactttc
1081 ctcgtggctc tcaaccagac aaccaatgaa gacatcaaag gatcatggac agggaagaat
1141 cgcgtccaga atccctacag ccatggcaat attgtgaaga actgctgtga agtgctgtgt
1201 ggccccttgc cccccagtgt gctggatcga aggggtattt tgccactgga ggaaagtgga
1261 agtcgacctc ccagtactca agagaccagt agcagcctct tgccacagag cccagccccc
1321 acagaacacc tgaactcaaa tgagatgccg gaggacagca gcactcccga agagatgcca
1381 cctccagagc ccccagagcc accacaggag gcagctgaag ctgagaagta gcctatctat
1441 ggaagagact tttgtttgtg tttaattagg gctatgagag atttcaggtg agaagttaaa
1501 cctgagacag agagcaagta agctgtccct tttaactgtt tttctttggt ctttagtcac
1561 ccagttgcac actggcattt tcttgctgca agctttttta aatttctgaa ctcaaggcag
1621 tggcagaaga tgtcagtcac ctctgataac tggaaaaatg ggtctcttgg gccctggcac
1681 tggttctcca tggcctcagc cacagggtcc ccttggaccc cctctcttcc ctccagatcc
1741 cagccctcct gcttggggtc actggtctca ttctggggct aaaagttttt gagactggct
1801 caaatcctcc caagctgctg cacgtgctga gtccagaggc agtcacagag acctctggcc
1861 aggggatcct aactgggttc ttggggtctt caggactgaa gaggagggag agtggggtca
1921 gaagattctc ctggccacca agtgccagca ttgcccacaa atccttttag gaatgggaca
1981 ggtaccttcc acttgttgta tttattagtg tagcttctcc tttgtctccc atccactctg
2041 acacctaagc cccactcttt tcccattaga tatatgtaag tagttgtagt agagataata
2101 attgacattt ctcgtagact acccagaaac ttttttaata cctgtgccat tctcaataag
2161 aatttatgag atgccagcgg catagccctt cacactctct gtctcatctc tcctcctttc
2221 tcattagccc cttttaattt gtttttcctt ttgactcctg ctcccattag gagcaggaat
2281 ggcagtaata aaagtctgca ctttggtcat ttcttttcct cagaggaagc ctgagtgctc
2341 acttaaacac tatcccctca gactccctgt gtgaggcctg cagaggccct gaatgcacaa
2401 atgggaaacc aaggcacaga gaggctctcc tctcctctcc tctcccccga tgtaccctca
2461 aaaaaaaaaa aaaaaaa
//