LOCUS       AY861435                4017 bp    mRNA    linear   HUM 26-JUL-2016
DEFINITION  Homo sapiens protocadherin 11X isoform 5 (PCDH11X) mRNA, partial
            cds, alternatively spliced.
ACCESSION   AY861435
VERSION     AY861435.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4017)
  AUTHORS   Vanhalst,K., Kools,P., Staes,K., van Roy,F. and Redies,C.
  TITLE     delta-Protocadherins: a gene family expressed differentially in the
            mouse brain
  JOURNAL   Cell. Mol. Life Sci. 62 (11), 1247-1259 (2005)
   PUBMED   15905963
REFERENCE   2  (bases 1 to 4017)
  AUTHORS   Vanhalst,K., Kools,P., Staes,K., van Roy,F. and Redies,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2004) Molecular Biomedical Research, VIB - Ghent
            University, Technologiepark 927, Ghent (Zwijnaarde) B-9052, Belgium
FEATURES             Location/Qualifiers
     source          1..4017
                     /db_xref="H-InvDB:HIT000332475"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /tissue_type="brain"
                     /dev_stage="fetus"
     gene            <1..>4017
                     /gene="PCDH11X"
                     /experiment="experimental evidence, no additional details
                     recorded"
     CDS             <1..3198
                     /gene="PCDH11X"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="comprises alternative exon 5a, resulting in
                     premature stop codon in exon 6; alternatively spliced"
                     /codon_start=1
                     /product="protocadherin 11X isoform 5"
                     /protein_id="AAX56125.1"
                     /translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL
                     KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR
                     DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL
                     PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK
                     VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDA
                     DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL
                     MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
                     NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA
                     MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD
                     APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN
                     SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV
                     IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY
                     ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD
                     VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT
                     EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT
                     PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ
                     TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF
                     VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTME
                     IWIHPQPQRKSEGKVAGKTVLTSSSPSAMTLSYLD"
     exon            <1..540
                     /gene="PCDH11X"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="by convention start codon in exon 1"
                     /number=1
     exon            541..3033
                     /gene="PCDH11X"
                     /number=2
     exon            3034..3114
                     /gene="PCDH11X"
                     /number=3
     exon            3115..3144
                     /gene="PCDH11X"
                     /number=4
     exon            3145..3180
                     /gene="PCDH11X"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="alternatively used exon, not present in the mouse
                     genome; its use leads to skipping of exon 5, and a
                     frameshift and premature stop in exon 6"
                     /number=5a
     exon            3181..3204
                     /gene="PCDH11X"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="comprises premature stop codon in this transcript"
                     /number=6
     3'UTR           3199..>4017
                     /gene="PCDH11X"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="noncoding in this transcript"
     exon            3205..>4017
                     /gene="PCDH11X"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="noncoding in this transcript"
                     /number=7
BASE COUNT         1216 a          954 c          823 g         1024 t
ORIGIN      
        1 atggacttgt tgtccgggac gtacattttc gcggtcctgc tagcatgcgt ggtgttccac
       61 tctggcgccc aggagaaaaa ctacaccatc cgagaagaaa tgccagaaaa cgtcctgata
      121 ggcgacttgt tgaaagacct taacttgtcg ctgattccaa acaagtcctt gacaactgct
      181 atgcagttca agctagtgta caagaccgga gatgtgccac tgattcgaat tgaagaggat
      241 actggtgaga tcttcactac tggcgctcgc attgatcgtg agaaattatg tgctggtatc
      301 ccaagggatg agcattgctt ttatgaagtg gaggttgcca ttttgccgga tgaaatattt
      361 agactggtta agatacgttt tctgatagaa gatataaatg ataatgcacc attgttccca
      421 gcaacagtta tcaacatatc aattccagag aactcggcta taaactctaa atatactctc
      481 ccagcggctg ttgatcctga cgtaggaata aacggagttc aaaactacga actaattaag
      541 agtcaaaaca tttttggcct cgatgtcatt gaaacaccag aaggagacaa gatgccacaa
      601 ctgattgttc aaaaggagtt agatagggaa gagaaggata cctacgtgat gaaagtaaag
      661 gttgaagatg gtggctttcc tcaaagatcc agtactgcta ttttgcaagt gagtgttact
      721 gatacaaatg acaaccaccc agtctttaag gagacagaga ttgaagtcag tataccagaa
      781 aatgctcctg taggcacttc agtgacacag ctccatgcca cagatgctga cataggtgaa
      841 aatgccaaga tccacttctc tttcagcaat ctagtctcca acattgccag gagattattt
      901 cacctcaatg ccaccactgg acttatcaca atcaaagaac cactggatag ggaagaaaca
      961 ccaaaccaca agttactggt tttggcaagt gatggtggat tgatgccagc aagagcaatg
     1021 gtgctggtaa atgttacaga tgtcaatgat aatgtcccat ccattgacat aagatacatc
     1081 gtcaatcctg tcaatgacac agttgttctt tcagaaaata ttccactcaa caccaaaatt
     1141 gctctcataa ctgtgacgga taaggatgcg gaccataatg gcagggtgac atgcttcaca
     1201 gatcatgaaa tccctttcag attaaggcca gtattcagta atcagttcct cctggagact
     1261 gcagcatatc ttgactatga gtccacaaaa gaatatgcca ttaaattact ggctgcagat
     1321 gctggcaaac ctcctttgaa tcagtcagca atgctcttca tcaaagtgaa agatgaaaat
     1381 gacaatgctc cagttttcac ccagtctttc gtaactgttt ctattcctga gaataactct
     1441 cctggcatcc agttgacgaa agtaagtgca atggatgcag acagtgggcc taatgctaag
     1501 atcaattacc tgctaggccc tgatgctcca cctgaattca gcctggattg tcgtacaggc
     1561 atgctgactg tagtgaagaa actagataga gaaaaagagg ataaatattt attcacaatt
     1621 ctggcaaaag ataacggggt accaccctta accagcaatg tcacagtctt tgtaagcatt
     1681 attgatcaga atgacaatag cccagttttc actcacaatg aatacaactt ctatgtccca
     1741 gaaaaccttc caaggcatgg tacagtagga ctaatcactg taactgatcc tgattatgga
     1801 gacaattctg cagttacgct ctccatttta gatgagaatg atgacttcac cattgattca
     1861 caaactggtg tcatccgacc aaatatttca tttgatagag aaaaacaaga atcttacact
     1921 ttctatgtaa aggctgagga tggtggtaga gtatcacgtt cttcaagtgc caaagtaacc
     1981 ataaatgtgg ttgatgtcaa tgacaacaaa ccagttttca ttgtccctcc ttccaactgt
     2041 tcttatgaat tggttctacc gtccactaat ccaggcacag tggtctttca ggtaattgct
     2101 gttgacaatg acactggcat gaatgcagag gttcgttaca gcattgtagg aggaaacaca
     2161 agagatctgt ttgcaatcga ccaagaaaca ggcaacataa cattgatgga gaaatgtgat
     2221 gttacagacc ttggtttaca cagagtgttg gtcaaagcta atgacttagg acagcctgat
     2281 tctctcttca gtgttgtaat tgtcaatctg ttcgtgaatg agtcggtgac caatgctaca
     2341 ctgattaatg aactggtgcg caaaagcact gaagcaccag tgaccccaaa tactgagata
     2401 gctgatgtat cctcaccaac tagtgactat gtcaagatcc tggttgcagc tgttgctggc
     2461 accataactg tcgttgtagt tattttcatc actgctgtag taagatgtcg ccaggcacca
     2521 caccttaagg ctgctcagaa aaacaagcag aattctgaat gggctacccc aaacccagaa
     2581 aacaggcaga tgataatgat gaagaaaaag aaaaagaaga agaagcattc ccctaagaac
     2641 ttgctgctta attttgtcac tattgaagaa actaaggcag atgatgttga cagtgatgga
     2701 aacagagtca cactagacct tcctattgat ctagaagagc aaacaatggg aaagtacaat
     2761 tgggtaacta cacctactac tttcaagccc gacagccctg atttggcccg acactacaaa
     2821 tctgcctctc cacagcctgc cttccaaatt cagcctgaaa ctcccctgaa ttcgaagcac
     2881 cacatcatcc aagaactgcc tctcgataac acctttgtgg cctgtgactc tatctccaag
     2941 tgttcctcaa gcagttcaga tccctacagc gtttctgact gtggctatcc agtgacgacc
     3001 ttcgaggtac ctgtgtccgt acacaccaga ccgccaatga aggaggttgt gcgatcttgc
     3061 acccccatga aagagtctac aactatggag atctggattc atccccaacc acagcggaaa
     3121 tctgaaggga aagtggcagg aaagactgtg cttacttcct cttccccttc tgccatgacc
     3181 ctttcatacc tggactaaag aaagctgcag aaataactgt tcaaccaact gtggaagagg
     3241 cctctgacaa ctgcactcaa gaatgtctca tctatggcca ttctgatgcc tgctggatgc
     3301 cggcatctct ggatcattcc agctcttcgc aagcacaggc ctctgctcta tgccacagcc
     3361 caccactgtc acaggcctct actcagcacc acagcccacg agtgacacag accattgctc
     3421 tctgccacag ccctccagtg acacagacca tcgcattgtg ccacagccca ccaccgatac
     3481 aggtgtctgc tctccaccac agtcctcctc tagtgcaggc tactgcactt caccacagcc
     3541 caccatcagc acaggcctca gccctctgct acagccctcc tttagcacag gctgctgcaa
     3601 tcagccacag ctctcctctg ccacaggtta ttgccctcca tcgtagtcag gcccaatcat
     3661 cagtcagttt gcagcaaggt tgggtgcaag gtgctgatgg gctatgctct gttgatcagg
     3721 gagtgcaagg tagtgcaaca tctcagtttt acaccatgtc tgaaagactt catcccagtg
     3781 atgattcaat taaagtcatt cctttgacaa ccttcactcc acgccaacag gccagaccgt
     3841 ccagaggtga ttcccccatt atggaagaac atcccttgta aagctaaaat agttacttca
     3901 aattttcaga aaagatgtat atagtcaaaa tttaagatac aattccaatg agtattctga
     3961 ttatcagatt tgtaaataac tatgtaaata gaaacagata ccagaataaa tctacag
//