LOCUS AY861435 4017 bp mRNA linear HUM 26-JUL-2016 DEFINITION Homo sapiens protocadherin 11X isoform 5 (PCDH11X) mRNA, partial cds, alternatively spliced. ACCESSION AY861435 VERSION AY861435.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4017) AUTHORS Vanhalst,K., Kools,P., Staes,K., van Roy,F. and Redies,C. TITLE delta-Protocadherins: a gene family expressed differentially in the mouse brain JOURNAL Cell. Mol. Life Sci. 62 (11), 1247-1259 (2005) PUBMED 15905963 REFERENCE 2 (bases 1 to 4017) AUTHORS Vanhalst,K., Kools,P., Staes,K., van Roy,F. and Redies,C. TITLE Direct Submission JOURNAL Submitted (17-DEC-2004) Molecular Biomedical Research, VIB - Ghent University, Technologiepark 927, Ghent (Zwijnaarde) B-9052, Belgium FEATURES Location/Qualifiers source 1..4017 /db_xref="H-InvDB:HIT000332475" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /tissue_type="brain" /dev_stage="fetus" gene <1..>4017 /gene="PCDH11X" /experiment="experimental evidence, no additional details recorded" CDS <1..3198 /gene="PCDH11X" /experiment="experimental evidence, no additional details recorded" /note="comprises alternative exon 5a, resulting in premature stop codon in exon 6; alternatively spliced" /codon_start=1 /product="protocadherin 11X isoform 5" /protein_id="AAX56125.1" /translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDA DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTME IWIHPQPQRKSEGKVAGKTVLTSSSPSAMTLSYLD" exon <1..540 /gene="PCDH11X" /experiment="experimental evidence, no additional details recorded" /note="by convention start codon in exon 1" /number=1 exon 541..3033 /gene="PCDH11X" /number=2 exon 3034..3114 /gene="PCDH11X" /number=3 exon 3115..3144 /gene="PCDH11X" /number=4 exon 3145..3180 /gene="PCDH11X" /experiment="experimental evidence, no additional details recorded" /note="alternatively used exon, not present in the mouse genome; its use leads to skipping of exon 5, and a frameshift and premature stop in exon 6" /number=5a exon 3181..3204 /gene="PCDH11X" /experiment="experimental evidence, no additional details recorded" /note="comprises premature stop codon in this transcript" /number=6 3'UTR 3199..>4017 /gene="PCDH11X" /experiment="experimental evidence, no additional details recorded" /note="noncoding in this transcript" exon 3205..>4017 /gene="PCDH11X" /experiment="experimental evidence, no additional details recorded" /note="noncoding in this transcript" /number=7 BASE COUNT 1216 a 954 c 823 g 1024 t ORIGIN 1 atggacttgt tgtccgggac gtacattttc gcggtcctgc tagcatgcgt ggtgttccac 61 tctggcgccc aggagaaaaa ctacaccatc cgagaagaaa tgccagaaaa cgtcctgata 121 ggcgacttgt tgaaagacct taacttgtcg ctgattccaa acaagtcctt gacaactgct 181 atgcagttca agctagtgta caagaccgga gatgtgccac tgattcgaat tgaagaggat 241 actggtgaga tcttcactac tggcgctcgc attgatcgtg agaaattatg tgctggtatc 301 ccaagggatg agcattgctt ttatgaagtg gaggttgcca ttttgccgga tgaaatattt 361 agactggtta agatacgttt tctgatagaa gatataaatg ataatgcacc attgttccca 421 gcaacagtta tcaacatatc aattccagag aactcggcta taaactctaa atatactctc 481 ccagcggctg ttgatcctga cgtaggaata aacggagttc aaaactacga actaattaag 541 agtcaaaaca tttttggcct cgatgtcatt gaaacaccag aaggagacaa gatgccacaa 601 ctgattgttc aaaaggagtt agatagggaa gagaaggata cctacgtgat gaaagtaaag 661 gttgaagatg gtggctttcc tcaaagatcc agtactgcta ttttgcaagt gagtgttact 721 gatacaaatg acaaccaccc agtctttaag gagacagaga ttgaagtcag tataccagaa 781 aatgctcctg taggcacttc agtgacacag ctccatgcca cagatgctga cataggtgaa 841 aatgccaaga tccacttctc tttcagcaat ctagtctcca acattgccag gagattattt 901 cacctcaatg ccaccactgg acttatcaca atcaaagaac cactggatag ggaagaaaca 961 ccaaaccaca agttactggt tttggcaagt gatggtggat tgatgccagc aagagcaatg 1021 gtgctggtaa atgttacaga tgtcaatgat aatgtcccat ccattgacat aagatacatc 1081 gtcaatcctg tcaatgacac agttgttctt tcagaaaata ttccactcaa caccaaaatt 1141 gctctcataa ctgtgacgga taaggatgcg gaccataatg gcagggtgac atgcttcaca 1201 gatcatgaaa tccctttcag attaaggcca gtattcagta atcagttcct cctggagact 1261 gcagcatatc ttgactatga gtccacaaaa gaatatgcca ttaaattact ggctgcagat 1321 gctggcaaac ctcctttgaa tcagtcagca atgctcttca tcaaagtgaa agatgaaaat 1381 gacaatgctc cagttttcac ccagtctttc gtaactgttt ctattcctga gaataactct 1441 cctggcatcc agttgacgaa agtaagtgca atggatgcag acagtgggcc taatgctaag 1501 atcaattacc tgctaggccc tgatgctcca cctgaattca gcctggattg tcgtacaggc 1561 atgctgactg tagtgaagaa actagataga gaaaaagagg ataaatattt attcacaatt 1621 ctggcaaaag ataacggggt accaccctta accagcaatg tcacagtctt tgtaagcatt 1681 attgatcaga atgacaatag cccagttttc actcacaatg aatacaactt ctatgtccca 1741 gaaaaccttc caaggcatgg tacagtagga ctaatcactg taactgatcc tgattatgga 1801 gacaattctg cagttacgct ctccatttta gatgagaatg atgacttcac cattgattca 1861 caaactggtg tcatccgacc aaatatttca tttgatagag aaaaacaaga atcttacact 1921 ttctatgtaa aggctgagga tggtggtaga gtatcacgtt cttcaagtgc caaagtaacc 1981 ataaatgtgg ttgatgtcaa tgacaacaaa ccagttttca ttgtccctcc ttccaactgt 2041 tcttatgaat tggttctacc gtccactaat ccaggcacag tggtctttca ggtaattgct 2101 gttgacaatg acactggcat gaatgcagag gttcgttaca gcattgtagg aggaaacaca 2161 agagatctgt ttgcaatcga ccaagaaaca ggcaacataa cattgatgga gaaatgtgat 2221 gttacagacc ttggtttaca cagagtgttg gtcaaagcta atgacttagg acagcctgat 2281 tctctcttca gtgttgtaat tgtcaatctg ttcgtgaatg agtcggtgac caatgctaca 2341 ctgattaatg aactggtgcg caaaagcact gaagcaccag tgaccccaaa tactgagata 2401 gctgatgtat cctcaccaac tagtgactat gtcaagatcc tggttgcagc tgttgctggc 2461 accataactg tcgttgtagt tattttcatc actgctgtag taagatgtcg ccaggcacca 2521 caccttaagg ctgctcagaa aaacaagcag aattctgaat gggctacccc aaacccagaa 2581 aacaggcaga tgataatgat gaagaaaaag aaaaagaaga agaagcattc ccctaagaac 2641 ttgctgctta attttgtcac tattgaagaa actaaggcag atgatgttga cagtgatgga 2701 aacagagtca cactagacct tcctattgat ctagaagagc aaacaatggg aaagtacaat 2761 tgggtaacta cacctactac tttcaagccc gacagccctg atttggcccg acactacaaa 2821 tctgcctctc cacagcctgc cttccaaatt cagcctgaaa ctcccctgaa ttcgaagcac 2881 cacatcatcc aagaactgcc tctcgataac acctttgtgg cctgtgactc tatctccaag 2941 tgttcctcaa gcagttcaga tccctacagc gtttctgact gtggctatcc agtgacgacc 3001 ttcgaggtac ctgtgtccgt acacaccaga ccgccaatga aggaggttgt gcgatcttgc 3061 acccccatga aagagtctac aactatggag atctggattc atccccaacc acagcggaaa 3121 tctgaaggga aagtggcagg aaagactgtg cttacttcct cttccccttc tgccatgacc 3181 ctttcatacc tggactaaag aaagctgcag aaataactgt tcaaccaact gtggaagagg 3241 cctctgacaa ctgcactcaa gaatgtctca tctatggcca ttctgatgcc tgctggatgc 3301 cggcatctct ggatcattcc agctcttcgc aagcacaggc ctctgctcta tgccacagcc 3361 caccactgtc acaggcctct actcagcacc acagcccacg agtgacacag accattgctc 3421 tctgccacag ccctccagtg acacagacca tcgcattgtg ccacagccca ccaccgatac 3481 aggtgtctgc tctccaccac agtcctcctc tagtgcaggc tactgcactt caccacagcc 3541 caccatcagc acaggcctca gccctctgct acagccctcc tttagcacag gctgctgcaa 3601 tcagccacag ctctcctctg ccacaggtta ttgccctcca tcgtagtcag gcccaatcat 3661 cagtcagttt gcagcaaggt tgggtgcaag gtgctgatgg gctatgctct gttgatcagg 3721 gagtgcaagg tagtgcaaca tctcagtttt acaccatgtc tgaaagactt catcccagtg 3781 atgattcaat taaagtcatt cctttgacaa ccttcactcc acgccaacag gccagaccgt 3841 ccagaggtga ttcccccatt atggaagaac atcccttgta aagctaaaat agttacttca 3901 aattttcaga aaagatgtat atagtcaaaa tttaagatac aattccaatg agtattctga 3961 ttatcagatt tgtaaataac tatgtaaata gaaacagata ccagaataaa tctacag //