LOCUS AY861434 4126 bp mRNA linear HUM 05-AUG-2010 DEFINITION Homo sapiens protocadherin 11X isoform 6 (PCDH11X) mRNA, complete cds, alternatively spliced. ACCESSION AY861434 VERSION AY861434.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4126) AUTHORS Vanhalst,K., Kools,P., Staes,K., van Roy,F. and Redies,C. TITLE delta-Protocadherins: a gene family expressed differentially in the mouse brain JOURNAL Cell. Mol. Life Sci. 62 (11), 1247-1259 (2005) PUBMED 15905963 REFERENCE 2 (bases 1 to 4126) AUTHORS Vanhalst,K., Kools,P., Staes,K., van Roy,F. and Redies,C. TITLE Direct Submission JOURNAL Submitted (17-DEC-2004) Molecular Biomedical Research, VIB - Ghent University, Technologiepark 927, Ghent (Zwijnaarde) B-9052, Belgium FEATURES Location/Qualifiers source 1..4126 /db_xref="H-InvDB:HIT000332474" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /tissue_type="brain" /dev_stage="fetus" gene <1..>4126 /gene="PCDH11X" /experiment="experimental evidence, no additional details recorded" CDS 1..3990 /gene="PCDH11X" /experiment="experimental evidence, no additional details recorded" /note="shortened cytoplasmic domain due to skipping of exon 4 and 6; alternatively spliced" /codon_start=1 /product="protocadherin 11X isoform 6" /protein_id="AAX56124.1" /translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDA DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTME IWIHPQPQSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGYPQEEYFDRA TPSNRTEGDGNSDPESTAEITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSS QAQASALCHSPPLSQASTQHHSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHS PPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLPQVIALHRSQAQSSVSLQQ GWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFTPRQQARPSRGD SPIMEEHPL" exon <1..540 /gene="PCDH11X" /experiment="experimental evidence, no additional details recorded" /note="by convention start codon in exon 1" /number=1 exon 541..3033 /gene="PCDH11X" /number=2 exon 3034..3114 /gene="PCDH11X" /number=3 exon 3115..3313 /gene="PCDH11X" /number=5 exon 3314..>4126 /gene="PCDH11X" /number=7 3'UTR 3991..>4126 /gene="PCDH11X" BASE COUNT 1238 a 988 c 856 g 1043 t ORIGIN 1 atggacttgt tgtccgggac gtacattttc gcggtcctgc tagcatgcgt ggtgttccac 61 tctggcgccc aggagaaaaa ctacaccatc cgagaagaaa tgccagaaaa cgtcctgata 121 ggcgacttgt tgaaagacct taacttgtcg ctgattccaa acaagtcctt gacaactgct 181 atgcagttca agctagtgta caagaccgga gatgtgccac tgattcgaat tgaagaggat 241 actggtgaga tcttcactac tggcgctcgc attgatcgtg agaaattatg tgctggtatc 301 ccaagggatg agcattgctt ttatgaagtg gaggttgcca ttttgccgga tgaaatattt 361 agactggtta agatacgttt tctgatagaa gatataaatg ataatgcacc attgttccca 421 gcaacagtta tcaacatatc aattccagag aactcggcta taaactctaa atatactctc 481 ccagcggctg ttgatcctga cgtaggaata aacggagttc aaaactacga actaattaag 541 agtcaaaaca tttttggcct cgatgtcatt gaaacaccag aaggagacaa gatgccacaa 601 ctgattgttc aaaaggagtt agatagggaa gagaaggata cctacgtgat gaaagtaaag 661 gttgaagatg gtggctttcc tcaaagatcc agtactgcta ttttgcaagt gagtgttact 721 gatacaaatg acaaccaccc agtctttaag gagacagaga ttgaagtcag tataccagaa 781 aatgctcctg taggcacttc agtgacacag ctccatgcca cagatgctga cataggtgaa 841 aatgccaaga tccacttctc tttcagcaat ctagtctcca acattgccag gagattattt 901 cacctcaatg ccaccactgg acttatcaca atcaaagaac cactggatag ggaagaaaca 961 ccaaaccaca agttactggt tttggcaagt gatggtggat tgatgccagc aagagcaatg 1021 gtgctggtaa atgttacaga tgtcaatgat aatgtcccat ccattgacat aagatacatc 1081 gtcaatcctg tcaatgacac agttgttctt tcagaaaata ttccactcaa caccaaaatt 1141 gctctcataa ctgtgacgga taaggatgcg gaccataatg gcagggtgac atgcttcaca 1201 gatcatgaaa tccctttcag attaaggcca gtattcagta atcagttcct cctggagact 1261 gcagcatatc ttgactatga gtccacaaaa gaatatgcca ttaaattact ggctgcagat 1321 gctggcaaac ctcctttgaa tcagtcagca atgctcttca tcaaagtgaa agatgaaaat 1381 gacaatgctc cagttttcac ccagtctttc gtaactgttt ctattcctga gaataactct 1441 cctggcatcc agttgacgaa agtaagtgca atggatgcag acagtgggcc taatgctaag 1501 atcaattacc tgctaggccc tgatgctcca cctgaattca gcctggattg tcgtacaggc 1561 atgctgactg tagtgaagaa actagataga gaaaaagagg ataaatattt attcacaatt 1621 ctggcaaaag ataacggggt accaccctta accagcaatg tcacagtctt tgtaagcatt 1681 attgatcaga atgacaatag cccagttttc actcacaatg aatacaactt ctatgtccca 1741 gaaaaccttc caaggcatgg tacagtagga ctaatcactg taactgatcc tgattatgga 1801 gacaattctg cagttacgct ctccatttta gatgagaatg atgacttcac cattgattca 1861 caaactggtg tcatccgacc aaatatttca tttgatagag aaaaacaaga atcttacact 1921 ttctatgtaa aggctgagga tggtggtaga gtatcacgtt cttcaagtgc caaagtaacc 1981 ataaatgtgg ttgatgtcaa tgacaacaaa ccagttttca ttgtccctcc ttccaactgt 2041 tcttatgaat tggttctacc gtccactaat ccaggcacag tggtctttca ggtaattgct 2101 gttgacaatg acactggcat gaatgcagag gttcgttaca gcattgtagg aggaaacaca 2161 agagatctgt ttgcaatcga ccaagaaaca ggcaacataa cattgatgga gaaatgtgat 2221 gttacagacc ttggtttaca cagagtgttg gtcaaagcta atgacttagg acagcctgat 2281 tctctcttca gtgttgtaat tgtcaatctg ttcgtgaatg agtcggtgac caatgctaca 2341 ctgattaatg aactggtgcg caaaagcact gaagcaccag tgaccccaaa tactgagata 2401 gctgatgtat cctcaccaac tagtgactat gtcaagatcc tggttgcagc tgttgctggc 2461 accataactg tcgttgtagt tattttcatc actgctgtag taagatgtcg ccaggcacca 2521 caccttaagg ctgctcagaa aaacaagcag aattctgaat gggctacccc aaacccagaa 2581 aacaggcaga tgataatgat gaagaaaaag aaaaagaaga agaagcattc ccctaagaac 2641 ttgctgctta attttgtcac tattgaagaa actaaggcag atgatgttga cagtgatgga 2701 aacagagtca cactagacct tcctattgat ctagaagagc aaacaatggg aaagtacaat 2761 tgggtaacta cacctactac tttcaagccc gacagccctg atttggcccg acactacaaa 2821 tctgcctctc cacagcctgc cttccaaatt cagcctgaaa ctcccctgaa ttcgaagcac 2881 cacatcatcc aagaactgcc tctcgataac acctttgtgg cctgtgactc tatctccaag 2941 tgttcctcaa gcagttcaga tccctacagc gtttctgact gtggctatcc agtgacgacc 3001 ttcgaggtac ctgtgtccgt acacaccaga ccgccaatga aggaggttgt gcgatcttgc 3061 acccccatga aagagtctac aactatggag atctggattc atccccaacc acagtcccag 3121 cggcgtgtca catttcacct gccagaaggc tctcaggaaa gcagcagtga tggtggactg 3181 ggagaccatg atgcaggcag ccttaccagc acatctcatg gcctgcccct tggctatcct 3241 caggaggagt actttgatcg tgctacaccc agcaatcgca ctgaagggga tggsaactcc 3301 gatcctgaat ctactgcaga aataactgtt caaccaactg tggaagaggc ctctgacaac 3361 tgcactcaag aatgtctcat ctatggccat tctgatgcct gctggatgcc ggcatctctg 3421 gatcattcca gctcttcgca agcacaggcc tctgctctat gccacagccc accactgtca 3481 caggcctcta ctcagcacca cagcccacga gtgacacaga ccattgctct ctgccacagc 3541 cctccagtga cacagaccat cgcattgtgc cacagcccac caccgataca ggtgtctgct 3601 ctccaccaca gtcctcctct agtgcaggct actgcacttc accacagccc accatcagca 3661 caggcctcag ccctctgcta cagccctcct ttagcacagg ctgctgcaat cagccacagc 3721 tctcctctgc cacaggttat tgccctccat cgtagtcagg cccaatcatc agtcagtttg 3781 cagcaaggtt gggtgcaagg tgctgatggg ctatgctctg ttgatcaggg agtgcaaggt 3841 agtgcaacat ctcagtttta caccatgtct gaaagacttc atcccagtga tgattcaatt 3901 aaagtcattc ctttgacaac cttcactcca cgccaacagg ccagaccgtc cagaggtgat 3961 tcccccatta tggaagaaca tcccttgtaa agctaaaata gttacttcaa attttcagaa 4021 aagatgtata tagtcaaaat ttaagataca attccaatga gtattctgat tatcagattt 4081 gtaaataact atgtaaatag aaacagatac cagaataaat ctacag //