LOCUS       AY861434                4126 bp    mRNA    linear   HUM 05-AUG-2010
DEFINITION  Homo sapiens protocadherin 11X isoform 6 (PCDH11X) mRNA, complete
            cds, alternatively spliced.
ACCESSION   AY861434
VERSION     AY861434.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4126)
  AUTHORS   Vanhalst,K., Kools,P., Staes,K., van Roy,F. and Redies,C.
  TITLE     delta-Protocadherins: a gene family expressed differentially in the
            mouse brain
  JOURNAL   Cell. Mol. Life Sci. 62 (11), 1247-1259 (2005)
   PUBMED   15905963
REFERENCE   2  (bases 1 to 4126)
  AUTHORS   Vanhalst,K., Kools,P., Staes,K., van Roy,F. and Redies,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2004) Molecular Biomedical Research, VIB - Ghent
            University, Technologiepark 927, Ghent (Zwijnaarde) B-9052, Belgium
FEATURES             Location/Qualifiers
     source          1..4126
                     /db_xref="H-InvDB:HIT000332474"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /tissue_type="brain"
                     /dev_stage="fetus"
     gene            <1..>4126
                     /gene="PCDH11X"
                     /experiment="experimental evidence, no additional details
                     recorded"
     CDS             1..3990
                     /gene="PCDH11X"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="shortened cytoplasmic domain due to skipping of
                     exon 4 and 6; alternatively spliced"
                     /codon_start=1
                     /product="protocadherin 11X isoform 6"
                     /protein_id="AAX56124.1"
                     /translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL
                     KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR
                     DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL
                     PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK
                     VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDA
                     DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL
                     MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
                     NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA
                     MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD
                     APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN
                     SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV
                     IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY
                     ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD
                     VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT
                     EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT
                     PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ
                     TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF
                     VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTME
                     IWIHPQPQSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGYPQEEYFDRA
                     TPSNRTEGDGNSDPESTAEITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSS
                     QAQASALCHSPPLSQASTQHHSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHS
                     PPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLPQVIALHRSQAQSSVSLQQ
                     GWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFTPRQQARPSRGD
                     SPIMEEHPL"
     exon            <1..540
                     /gene="PCDH11X"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="by convention start codon in exon 1"
                     /number=1
     exon            541..3033
                     /gene="PCDH11X"
                     /number=2
     exon            3034..3114
                     /gene="PCDH11X"
                     /number=3
     exon            3115..3313
                     /gene="PCDH11X"
                     /number=5
     exon            3314..>4126
                     /gene="PCDH11X"
                     /number=7
     3'UTR           3991..>4126
                     /gene="PCDH11X"
BASE COUNT         1238 a          988 c          856 g         1043 t
ORIGIN      
        1 atggacttgt tgtccgggac gtacattttc gcggtcctgc tagcatgcgt ggtgttccac
       61 tctggcgccc aggagaaaaa ctacaccatc cgagaagaaa tgccagaaaa cgtcctgata
      121 ggcgacttgt tgaaagacct taacttgtcg ctgattccaa acaagtcctt gacaactgct
      181 atgcagttca agctagtgta caagaccgga gatgtgccac tgattcgaat tgaagaggat
      241 actggtgaga tcttcactac tggcgctcgc attgatcgtg agaaattatg tgctggtatc
      301 ccaagggatg agcattgctt ttatgaagtg gaggttgcca ttttgccgga tgaaatattt
      361 agactggtta agatacgttt tctgatagaa gatataaatg ataatgcacc attgttccca
      421 gcaacagtta tcaacatatc aattccagag aactcggcta taaactctaa atatactctc
      481 ccagcggctg ttgatcctga cgtaggaata aacggagttc aaaactacga actaattaag
      541 agtcaaaaca tttttggcct cgatgtcatt gaaacaccag aaggagacaa gatgccacaa
      601 ctgattgttc aaaaggagtt agatagggaa gagaaggata cctacgtgat gaaagtaaag
      661 gttgaagatg gtggctttcc tcaaagatcc agtactgcta ttttgcaagt gagtgttact
      721 gatacaaatg acaaccaccc agtctttaag gagacagaga ttgaagtcag tataccagaa
      781 aatgctcctg taggcacttc agtgacacag ctccatgcca cagatgctga cataggtgaa
      841 aatgccaaga tccacttctc tttcagcaat ctagtctcca acattgccag gagattattt
      901 cacctcaatg ccaccactgg acttatcaca atcaaagaac cactggatag ggaagaaaca
      961 ccaaaccaca agttactggt tttggcaagt gatggtggat tgatgccagc aagagcaatg
     1021 gtgctggtaa atgttacaga tgtcaatgat aatgtcccat ccattgacat aagatacatc
     1081 gtcaatcctg tcaatgacac agttgttctt tcagaaaata ttccactcaa caccaaaatt
     1141 gctctcataa ctgtgacgga taaggatgcg gaccataatg gcagggtgac atgcttcaca
     1201 gatcatgaaa tccctttcag attaaggcca gtattcagta atcagttcct cctggagact
     1261 gcagcatatc ttgactatga gtccacaaaa gaatatgcca ttaaattact ggctgcagat
     1321 gctggcaaac ctcctttgaa tcagtcagca atgctcttca tcaaagtgaa agatgaaaat
     1381 gacaatgctc cagttttcac ccagtctttc gtaactgttt ctattcctga gaataactct
     1441 cctggcatcc agttgacgaa agtaagtgca atggatgcag acagtgggcc taatgctaag
     1501 atcaattacc tgctaggccc tgatgctcca cctgaattca gcctggattg tcgtacaggc
     1561 atgctgactg tagtgaagaa actagataga gaaaaagagg ataaatattt attcacaatt
     1621 ctggcaaaag ataacggggt accaccctta accagcaatg tcacagtctt tgtaagcatt
     1681 attgatcaga atgacaatag cccagttttc actcacaatg aatacaactt ctatgtccca
     1741 gaaaaccttc caaggcatgg tacagtagga ctaatcactg taactgatcc tgattatgga
     1801 gacaattctg cagttacgct ctccatttta gatgagaatg atgacttcac cattgattca
     1861 caaactggtg tcatccgacc aaatatttca tttgatagag aaaaacaaga atcttacact
     1921 ttctatgtaa aggctgagga tggtggtaga gtatcacgtt cttcaagtgc caaagtaacc
     1981 ataaatgtgg ttgatgtcaa tgacaacaaa ccagttttca ttgtccctcc ttccaactgt
     2041 tcttatgaat tggttctacc gtccactaat ccaggcacag tggtctttca ggtaattgct
     2101 gttgacaatg acactggcat gaatgcagag gttcgttaca gcattgtagg aggaaacaca
     2161 agagatctgt ttgcaatcga ccaagaaaca ggcaacataa cattgatgga gaaatgtgat
     2221 gttacagacc ttggtttaca cagagtgttg gtcaaagcta atgacttagg acagcctgat
     2281 tctctcttca gtgttgtaat tgtcaatctg ttcgtgaatg agtcggtgac caatgctaca
     2341 ctgattaatg aactggtgcg caaaagcact gaagcaccag tgaccccaaa tactgagata
     2401 gctgatgtat cctcaccaac tagtgactat gtcaagatcc tggttgcagc tgttgctggc
     2461 accataactg tcgttgtagt tattttcatc actgctgtag taagatgtcg ccaggcacca
     2521 caccttaagg ctgctcagaa aaacaagcag aattctgaat gggctacccc aaacccagaa
     2581 aacaggcaga tgataatgat gaagaaaaag aaaaagaaga agaagcattc ccctaagaac
     2641 ttgctgctta attttgtcac tattgaagaa actaaggcag atgatgttga cagtgatgga
     2701 aacagagtca cactagacct tcctattgat ctagaagagc aaacaatggg aaagtacaat
     2761 tgggtaacta cacctactac tttcaagccc gacagccctg atttggcccg acactacaaa
     2821 tctgcctctc cacagcctgc cttccaaatt cagcctgaaa ctcccctgaa ttcgaagcac
     2881 cacatcatcc aagaactgcc tctcgataac acctttgtgg cctgtgactc tatctccaag
     2941 tgttcctcaa gcagttcaga tccctacagc gtttctgact gtggctatcc agtgacgacc
     3001 ttcgaggtac ctgtgtccgt acacaccaga ccgccaatga aggaggttgt gcgatcttgc
     3061 acccccatga aagagtctac aactatggag atctggattc atccccaacc acagtcccag
     3121 cggcgtgtca catttcacct gccagaaggc tctcaggaaa gcagcagtga tggtggactg
     3181 ggagaccatg atgcaggcag ccttaccagc acatctcatg gcctgcccct tggctatcct
     3241 caggaggagt actttgatcg tgctacaccc agcaatcgca ctgaagggga tggsaactcc
     3301 gatcctgaat ctactgcaga aataactgtt caaccaactg tggaagaggc ctctgacaac
     3361 tgcactcaag aatgtctcat ctatggccat tctgatgcct gctggatgcc ggcatctctg
     3421 gatcattcca gctcttcgca agcacaggcc tctgctctat gccacagccc accactgtca
     3481 caggcctcta ctcagcacca cagcccacga gtgacacaga ccattgctct ctgccacagc
     3541 cctccagtga cacagaccat cgcattgtgc cacagcccac caccgataca ggtgtctgct
     3601 ctccaccaca gtcctcctct agtgcaggct actgcacttc accacagccc accatcagca
     3661 caggcctcag ccctctgcta cagccctcct ttagcacagg ctgctgcaat cagccacagc
     3721 tctcctctgc cacaggttat tgccctccat cgtagtcagg cccaatcatc agtcagtttg
     3781 cagcaaggtt gggtgcaagg tgctgatggg ctatgctctg ttgatcaggg agtgcaaggt
     3841 agtgcaacat ctcagtttta caccatgtct gaaagacttc atcccagtga tgattcaatt
     3901 aaagtcattc ctttgacaac cttcactcca cgccaacagg ccagaccgtc cagaggtgat
     3961 tcccccatta tggaagaaca tcccttgtaa agctaaaata gttacttcaa attttcagaa
     4021 aagatgtata tagtcaaaat ttaagataca attccaatga gtattctgat tatcagattt
     4081 gtaaataact atgtaaatag aaacagatac cagaataaat ctacag
//