LOCUS AY861432 4156 bp mRNA linear HUM 05-AUG-2010
DEFINITION Homo sapiens protocadherin 11X isoform 8 (PCDH11X) mRNA, complete
cds, alternatively spliced.
ACCESSION AY861432
VERSION AY861432.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4156)
AUTHORS Vanhalst,K., Kools,P., Staes,K., van Roy,F. and Redies,C.
TITLE delta-Protocadherins: a gene family expressed differentially in the
mouse brain
JOURNAL Cell. Mol. Life Sci. 62 (11), 1247-1259 (2005)
PUBMED 15905963
REFERENCE 2 (bases 1 to 4156)
AUTHORS Vanhalst,K., Kools,P., Staes,K., van Roy,F. and Redies,C.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2004) Molecular Biomedical Research, VIB - Ghent
University, Technologiepark 927, Ghent (Zwijnaarde) B-9052, Belgium
FEATURES Location/Qualifiers
source 1..4156
/db_xref="H-InvDB:HIT000332472"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/tissue_type="brain"
/dev_stage="fetus"
gene <1..>4156
/gene="PCDH11X"
/experiment="experimental evidence, no additional details
recorded"
CDS 1..4020
/gene="PCDH11X"
/experiment="experimental evidence, no additional details
recorded"
/note="shortened cytoplasmic domain due to skipping of
exon 6; alternatively spliced"
/codon_start=1
/product="protocadherin 11X isoform 8"
/protein_id="AAX56122.1"
/translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL
KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR
DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL
PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK
VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDA
DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL
MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA
MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD
APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN
SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV
IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY
ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD
VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT
EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT
PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ
TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF
VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTME
IWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLG
YPQEEYFDRATPSNRTEGDGNSDPESTAEITVQPTVEEASDNCTQECLIYGHSDACWM
PASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTIALCHSPPVTQTIALCHSPP
PIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLPQVIALHRS
QAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFTP
RQQARPSRGDSPIMEEHPL"
exon <1..540
/gene="PCDH11X"
/experiment="experimental evidence, no additional details
recorded"
/note="by convention start codon in exon 1"
/number=1
exon 541..3033
/gene="PCDH11X"
/number=2
exon 3034..3114
/gene="PCDH11X"
/number=3
exon 3115..3144
/gene="PCDH11X"
/number=4
exon 3145..3343
/gene="PCDH11X"
/number=5
exon 3344..>4156
/gene="PCDH11X"
/number=7
3'UTR 4021..>4156
/gene="PCDH11X"
/experiment="experimental evidence, no additional details
recorded"
BASE COUNT 1250 a 991 c 868 g 1046 t
ORIGIN
1 atggacttgt tgtccgggac gtacattttc gcggtcctgc tagcatgcgt ggtgttccac
61 tctggcgccc aggagaaaaa ctacaccatc cgagaagaaa tgccagaaaa cgtcctgata
121 ggcgacttgt tgaaagacct taacttgtcg ctgattccaa acaagtcctt gacaactgct
181 atgcagttca agctagtgta caagaccgga gatgtgccac tgattcgaat tgaagaggat
241 actggtgaga tcttcactac tggcgctcgc attgatcgtg agaaattatg tgctggtatc
301 ccaagggatg agcattgctt ttatgaagtg gaggttgcca ttttgccgga tgaaatattt
361 agactggtta agatacgttt tctgatagaa gatataaatg ataatgcacc attgttccca
421 gcaacagtta tcaacatatc aattccagag aactcggcta taaactctaa atatactctc
481 ccagcggctg ttgatcctga cgtaggaata aacggagttc aaaactacga actaattaag
541 agtcaaaaca tttttggcct cgatgtcatt gaaacaccag aaggagacaa gatgccacaa
601 ctgattgttc aaaaggagtt agatagggaa gagaaggata cctacgtgat gaaagtaaag
661 gttgaagatg gtggctttcc tcaaagatcc agtactgcta ttttgcaagt gagtgttact
721 gatacaaatg acaaccaccc agtctttaag gagacagaga ttgaagtcag tataccagaa
781 aatgctcctg taggcacttc agtgacacag ctccatgcca cagatgctga cataggtgaa
841 aatgccaaga tccacttctc tttcagcaat ctagtctcca acattgccag gagattattt
901 cacctcaatg ccaccactgg acttatcaca atcaaagaac cactggatag ggaagaaaca
961 ccaaaccaca agttactggt tttggcaagt gatggtggat tgatgccagc aagagcaatg
1021 gtgctggtaa atgttacaga tgtcaatgat aatgtcccat ccattgacat aagatacatc
1081 gtcaatcctg tcaatgacac agttgttctt tcagaaaata ttccactcaa caccaaaatt
1141 gctctcataa ctgtgacgga taaggatgcg gaccataatg gcagggtgac atgcttcaca
1201 gatcatgaaa tccctttcag attaaggcca gtattcagta atcagttcct cctggagact
1261 gcagcatatc ttgactatga gtccacaaaa gaatatgcca ttaaattact ggctgcagat
1321 gctggcaaac ctcctttgaa tcagtcagca atgctcttca tcaaagtgaa agatgaaaat
1381 gacaatgctc cagttttcac ccagtctttc gtaactgttt ctattcctga gaataactct
1441 cctggcatcc agttgacgaa agtaagtgca atggatgcag acagtgggcc taatgctaag
1501 atcaattacc tgctaggccc tgatgctcca cctgaattca gcctggattg tcgtacaggc
1561 atgctgactg tagtgaagaa actagataga gaaaaagagg ataaatattt attcacaatt
1621 ctggcaaaag ataacggggt accaccctta accagcaatg tcacagtctt tgtaagcatt
1681 attgatcaga atgacaatag cccagttttc actcacaatg aatacaactt ctatgtccca
1741 gaaaaccttc caaggcatgg tacagtagga ctaatcactg taactgatcc tgattatgga
1801 gacaattctg cagttacgct ctccatttta gatgagaatg atgacttcac cattgattca
1861 caaactggtg tcatccgacc aaatatttca tttgatagag aaaaacaaga atcttacact
1921 ttctatgtaa aggctgagga tggtggtaga gtatcacgtt cttcaagtgc caaagtaacc
1981 ataaatgtgg ttgatgtcaa tgacaacaaa ccagttttca ttgtccctcc ttccaactgt
2041 tcttatgaat tggttctacc gtccactaat ccaggcacag tggtctttca ggtaattgct
2101 gttgacaatg acactggcat gaatgcagag gttcgttaca gcattgtagg aggaaacaca
2161 agagatctgt ttgcaatcga ccaagaaaca ggcaacataa cattgatgga gaaatgtgat
2221 gttacagacc ttggtttaca cagagtgttg gtcaaagcta atgacttagg acagcctgat
2281 tctctcttca gtgttgtaat tgtcaatctg ttcgtgaatg agtcggtgac caatgctaca
2341 ctgattaatg aactggtgcg caaaagcact gaagcaccag tgaccccaaa tactgagata
2401 gctgatgtat cctcaccaac tagtgactat gtcaagatcc tggttgcagc tgttgctggc
2461 accataactg tcgttgtagt tattttcatc actgctgtag taagatgtcg ccaggcacca
2521 caccttaagg ctgctcagaa aaacaagcag aattctgaat gggctacccc aaacccagaa
2581 aacaggcaga tgataatgat gaagaaaaag aaaaagaaga agaagcattc ccctaagaac
2641 ttgctgctta attttgtcac tattgaagaa actaaggcag atgatgttga cagtgatgga
2701 aacagagtca cactagacct tcctattgat ctagaagagc aaacaatggg aaagtacaat
2761 tgggtaacta cacctactac tttcaagccc gacagccctg atttggcccg acactacaaa
2821 tctgcctctc cacagcctgc cttccaaatt cagcctgaaa ctcccctgaa ttcgaagcac
2881 cacatcatcc aagaactgcc tctcgataac acctttgtgg cctgtgactc tatctccaag
2941 tgttcctcaa gcagttcaga tccctacagc gtttctgact gtggctatcc agtgacgacc
3001 ttcgaggtac ctgtgtccgt acacaccaga ccgccaatga aggaggttgt gcgatcttgc
3061 acccccatga aagagtctac aactatggag atctggattc atccccaacc acagcggaaa
3121 tctgaaggga aagtggcagg aaagtcccag cggcgtgtca catttcacct gccagaaggc
3181 tctcaggaaa gcagcagtga tggtggactg ggagaccatg atgcaggcag ccttaccagc
3241 acatctcatg gcctgcccct tggctatcct caggaggagt actttgatcg tgctacaccc
3301 agcaatcgca ctgaagggga tggsaactcc gatcctgaat ctactgcaga aataactgtt
3361 caaccaactg tggaagaggc ctctgacaac tgcactcaag aatgtctcat ctatggccat
3421 tctgatgcct gctggatgcc ggcatctctg gatcattcca gctcttcgca agcacaggcc
3481 tctgctctat gccacagccc accactgtca caggcctcta ctcagcacca cagcccacga
3541 gtgacacaga ccattgctct ctgccacagc cctccagtga cacagaccat cgcattgtgc
3601 cacagcccac caccgataca ggtgtctgct ctccaccaca gtcctcctct agtgcaggct
3661 actgcacttc accacagccc accatcagca caggcctcag ccctctgcta cagccctcct
3721 ttagcacagg ctgctgcaat cagccacagc tctcctctgc cacaggttat tgccctccat
3781 cgtagtcagg cccaatcatc agtcagtttg cagcaaggtt gggtgcaagg tgctgatggg
3841 ctatgctctg ttgatcaggg agtgcaaggt agtgcaacat ctcagtttta caccatgtct
3901 gaaagacttc atcccagtga tgattcaatt aaagtcattc ctttgacaac cttcactcca
3961 cgccaacagg ccagaccgtc cagaggtgat tcccccatta tggaagaaca tcccttgtaa
4021 agctaaaata gttacttcaa attttcagaa aagatgtata tagtcaaaat ttaagataca
4081 attccaatga gtattctgat tatcagattt gtaaataact atgtaaatag aaacagatac
4141 cagaataaat ctacag
//