LOCUS AY653201 3783 bp mRNA linear HUM 31-JAN-2005
DEFINITION Homo sapiens HERC6 splice variant mRNA, complete cds, alternatively
spliced.
ACCESSION AY653201
VERSION AY653201.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3783)
AUTHORS Hochrainer,K., Mayer,H., Baranyi,U., Binder,B., Lipp,J. and
Kroismayr,R.
TITLE The human HERC family of ubiquitin ligases: novel members, genomic
organization, expression profiling, and evolutionary aspects
JOURNAL Genomics 85 (2), 153-164 (2005)
PUBMED 15676274
REFERENCE 2 (bases 1 to 3783)
AUTHORS Kroismayr,R.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2004) Vascular Biology and Thrombosis Research,
Medical University Vienna, Brunnerstr.59, Vienna 1235, Austria
FEATURES Location/Qualifiers
source 1..3783
/db_xref="H-InvDB:HIT000255946"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="4"
/map="4q22"
/cell_line="Jurkat"
CDS 184..3144
/note="potential ubiquitin ligase; missing exon 16;
alternatively spliced"
/codon_start=1
/product="HERC6 splice variant"
/protein_id="AAV66895.1"
/translation="MYFCWGADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRV
LSCGDNSRGQLGRRGAQRGELPEPIQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAG
SEGQLGIGEFKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQL
GLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGR
NVPVQSNKPLSVGALKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEK
RGPQLVERIDGLVSQIDCGSYHTLAYVHTTGQVVSFGHGPSDTSKPTHPEALTENFDI
SCLISAEDFVDVQVKHIFAGTYANFVTTHQDTSSTRAPGKTLPEISRISQSMAEKWIA
VKRRSTEHEMAKSEIRMIFSSPACLTASFLKKRGTGETTSIDVDLEMARDTFKKLTKK
EWISSMITTCLEDDLLRALPCHSPHQEALSVFLLLPECPVMHDSKNWKNLVVPFAKAV
CEMSKQSLQVLKKCWAFLQESSLNPLIQMLKAAIISQLLHQTKTEQDHCNVKALLGMM
KELHKVNKANCRLPENTFNINELSNLLNFYIDRGRQLFRDNHLMSEKKAYMLMHETIL
QKKDEFPPSPRFILRVRRSRLVKDALRQLSQAEATDFCKVLVVEFINEICPESGGVSS
EFFHCMFEEMTKPEYGMFMYPEMGSCMWFPAKPKPEKKRYFLFGMLCGLSLFNLNVAN
LPFPLALYKKLLDQKPSLEDLKELSPRLGKSLQEVLDDAADDIGDALCIRFSIHWDQN
DVDLIPNGISIPVDQTNKRDYVSKYIDYIFNVSVKAVYEEFQRGFYRVCEKEILRHFY
PEELMTAIIGNTDYDWKQFEQNSKYEQGYQKSHPTIQLFWKAFHKLTLDEKKKFLFFL
TGRDRLHARGIQKMEIVFRCPETFSERDHPTSITCHNILSLPKYSTMERMEEALQVAI
NNNRGFVSPMLTQS"
BASE COUNT 1085 a 834 c 916 g 948 t
ORIGIN
1 agcacttgaa gttcaggcag cgagagttga catggggcca gggctgcgcc cctggggcgg
61 gttgaagaca gggtgagtct cttgatattc aggaaatcat cgcgcaccca gtcaccagcg
121 ttcgggagcc tgtcgcagcg ggaccgacgg aatccggagc aggcgacagg gcgcagaagc
181 gggatgtact tctgttgggg cgccgactcc agggagctgc agcgccggag gacggcgggc
241 agccccgggg ctgagctact gcaggcggcc agcggggagc gccactctct gctgctgctg
301 accaaccaca gggtcctctc gtgcggagac aacagcaggg gtcagctggg ccgcaggggc
361 gcgcagcgcg gggagctgcc agaaccaatt caggcattgg aaaccctaat tgttgatctc
421 gtgagctgcg ggaaggagca ctccctggct gtgtgccaca aaggaagggt cttcgcatgg
481 ggagctggtt ctgaagggca gctggggatt ggagaattca aggaaataag tttcacacct
541 aagaaaataa tgactctgaa tgatataaaa ataatacaag tttcctgtgg acactaccac
601 tccctggcat tatcaaaaga tagccaagtg ttttcgtggg gaaagaacag ccatgggcag
661 ctgggcttgg ggaaggagtt cccctcccaa gccagcccgc agagggtgag gtccctggag
721 gggatcccac tggctcaggt ggctgccgga ggggctcaca gctttgccct gtctctctgt
781 gggacttcgt ttggctgggg aagtaacagt gccgggcagc tggccctcag tgggcgtaat
841 gtcccagtgc aaagcaacaa gcctctctca gtcggtgcac tgaagaatct aggtgtggtt
901 tatatcagct gtggtgatgc acacactgcg gtgcttaccc aggacgggaa agtgttcaca
961 tttggagaca atcgctctgg acagctggga tacagcccca ctcctgagaa gagaggtcca
1021 caacttgtgg aaagaattga tggcctagtt tcgcagatag attgtggaag ttatcacacc
1081 ctggcatatg tgcacaccac tggtcaggtg gtatcttttg gtcatggacc aagtgacaca
1141 agcaagccaa ctcatccgga ggccctgaca gagaactttg acattagctg cctgatttct
1201 gctgaagact tcgtggatgt tcaagtcaaa cacatttttg ctggaacata tgccaacttt
1261 gtgacaactc atcaggatac tagttccaca cgtgctcccg ggaaaaccct gccagaaata
1321 agccgaatta gccagtccat ggcagaaaaa tggatagcag tgaaaagaag aagtactgaa
1381 catgaaatgg ctaaaagtga aattagaatg atattttcat ctcctgcttg tctgactgca
1441 agttttttaa agaaaagagg aactggagaa acgacttcca ttgatgtgga cttagaaatg
1501 gcaagagata ccttcaagaa gttaacaaaa aaggaatgga tttcttccat gataactacg
1561 tgtctcgagg atgatctgct cagagctctt ccatgccatt ctccacacca agaagcttta
1621 tcagttttcc tcctgctccc agaatgtcct gtgatgcatg attctaagaa ctggaagaac
1681 ctggtggttc catttgcaaa ggctgtgtgt gaaatgagta aacaatcttt gcaagtccta
1741 aagaagtgtt gggcattttt gcaagaatct tctctgaatc cgctgatcca gatgcttaaa
1801 gcagccatca tctctcagct gcttcatcag actaaaaccg aacaggatca ctgtaatgtt
1861 aaagctcttt taggaatgat gaaagaactg cataaggtaa acaaagctaa ctgtcgacta
1921 ccagaaaata ctttcaacat aaatgaactc tccaacttat taaactttta tatagataga
1981 ggaagacagc tctttcggga taaccacctg atgtcagaaa agaaagcata catgcttatg
2041 catgaaacaa ttctgcaaaa aaaggatgaa tttcctccat cacccagatt tatacttaga
2101 gtcagacgaa gtcgcctggt taaagatgct ctgcgtcaat taagtcaagc tgaagctact
2161 gacttctgca aagtattagt ggttgaattt attaatgaaa tttgtcctga gtctggaggg
2221 gttagttcag agttcttcca ctgtatgttt gaagagatga ccaagccaga atatggaatg
2281 ttcatgtatc ctgaaatggg ttcctgcatg tggtttcctg ccaagcctaa acctgagaag
2341 aaaagatatt tcctctttgg aatgctgtgt ggactctcct tattcaattt aaatgttgct
2401 aaccttcctt tcccactggc tctgtataaa aaacttctgg accaaaagcc atcattggaa
2461 gatttaaaag aactcagtcc tcggttgggg aagagtttgc aagaagttct agatgatgct
2521 gctgatgaca ttggagatgc gctctgcata cgcttttcta tacactggga ccaaaatgat
2581 gttgacttaa ttccaaatgg gatctccata cctgtggacc aaaccaacaa gagagactat
2641 gtttctaagt atattgatta cattttcaac gtctctgtaa aagcagttta tgaggaattt
2701 cagagaggat tttatagagt ctgtgagaag gagatactta gacatttcta ccctgaagaa
2761 ctaatgacag caatcattgg aaatactgat tatgactgga aacagtttga acagaattca
2821 aagtatgagc aaggatacca aaaatcacat cctactatac agttgttttg gaaggctttc
2881 cacaaactaa ccttggatga aaagaaaaaa ttcctctttt tccttacagg acgtgatagg
2941 ctgcatgcaa gaggcataca gaaaatggaa atagtatttc gctgtcctga aactttcagt
3001 gaaagagatc acccaacatc aataacttgt cataatattc tctccctccc taagtattct
3061 acaatggaaa gaatggagga agcacttcaa gtagccatca acaacaacag aggatttgtc
3121 tcacccatgc tcacacagtc ataatcacct ctgagagact cagggtgggc tttctcacac
3181 ttggatcctt ctgttcttcc ttacacctaa ataatacaag agattaatga atagtggtta
3241 gaagtagttg agggagagat tgggggaatg gggagatgat gatgatggtc aaagggtgca
3301 aaatctcaca caagactgag gcaggagaat agggtacaga gatagggatc taaggatgac
3361 ttggacacac tccctggcac tgaagagtct gaacactggc ctgtgattgg tccattccag
3421 gaccttcatt tgcataaggt atcaaaccac atcagcctct gattggccat gggccagacc
3481 tgcactctgg ccaatgattg gttcattcca ggacattcat ttgcataagg agtcaaacca
3541 caccagtctt ggattggctg tgagccaatt cacctcagtc tctaattggc tgtgagtcag
3601 tctttcattt acatagggtg taaccatcaa gaaacctcta cagggtactt aagccccaga
3661 agattttgct accagggctc ttgagccact tgctctagcc cactcccacc ctgtggaatg
3721 tactttcact tttgctgctt cactgccttg tgctccaata aatccactcc ttcaccaccc
3781 aaa
//