LOCUS AY574028 4614 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma c3 (Pcdhgc3) mRNA, complete
cds.
ACCESSION AY574028
VERSION AY574028.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4614)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 4614)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 4614)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 4614)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..4614
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..4614
/gene="Pcdhgc3"
CDS 58..2862
/gene="Pcdhgc3"
/note="PCDHGC3; a member of the protocadherin gamma
cluster"
/codon_start=1
/product="protocadherin gamma c3"
/protein_id="AAT77609.1"
/translation="MVAEARSSGLVSPGRTVGVLLLLAALTEASTIIHYEILEEREKG
FPVGNVVTDLGLDLGSLSARRLRVVSGASRRFFEVNWETGEMFVNDRLDREELCGTLP
SCTVTLELVVENPLELFSAEVVVQDINDNNPSFPTAEMKLEISEAMAPGTRFPLESAH
DPDVGSNSLQTYELSHNEYFALRVQTREDGTKYAELVLERALDWEREPSVQLVLTALD
GGTPARSATLPIRITVLDANDNAPAFNQSLYRARVREDAPPGTRVAQVRATDLDEGLN
GEIVYSFGSHNRAGVRELFALDLVTGVLTIKGRLDFEDTKLHEIYIQAKDKGANPEGA
HCKVLVEVVDVNDNAPEITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGQVTCEVP
PGLPFSLTSSLKNYFTLKTSAALDRETVPEYNLSITARDSGTPSLSALTTVRVQVSDI
NDNPPQSSQSSYDVYVEENNLPGVPILNLSVWDPDAPPNARLSFFLLEPGAETGLVGR
YFTINRDNGILTTLVPLDYEDQREFQLTAHINDGGTPVLATNISVNIFVTDRNDNAPQ
VLYPRPGQSSVEVLPRGTAAGHVVSRVVGWDADAGHNAWLSYSLMGAPNQSLFAVGLH
TGQISTARPIQDTDSPRQILTVLISDNGEPLLSTTATLTVSVTEESPEARAEFPSGSA
PREQNKNLTFYLLLSLILVSVGFAVTVLGVIIFKVYKWKRSRDLYRAPVSSLYRTPVS
SLHADAVRGGLMPPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQNTLRSCDPVFYR
QVLGAESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILA
SASEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
GKAPAGGNGNKKKSGKKEKK"
BASE COUNT 1035 a 1342 c 1217 g 1020 t
ORIGIN
1 tctgccaaac ctccgggacc acctggaccc cgccaagagg agctgctttt gagtgagatg
61 gtcgcagagg cccggagcag cggactggta agccccggga gaacggtggg agttttgctt
121 ctgctagctg ccttgaccga ggcttccacc atcattcact atgagatcct ggaggagaga
181 gagaaggggt ttcccgtggg taacgtggtc acggatcttg gtttggatct cggcagtctg
241 tcggcccgca ggctccgggt ggtgtccgga gctagccgta ggttctttga ggtgaactgg
301 gagactggag agatgttcgt caacgatcga ctggaccgag aggagctgtg tgggacgctg
361 ccctcctgca ctgtaactct ggagttggtg gtagagaacc cgctggagct gttcagcgcg
421 gaagtggtgg tccaggacat caacgacaac aatccctctt tccccaccgc ggaaatgaaa
481 ttggagatta gcgaggccat ggcgccgggg acgcgctttc cgctcgagag cgcgcacgat
541 cccgatgtgg gaagcaactc tttacaaacc tatgagctga gccacaacga gtactttgcg
601 ctccgcgtgc agactcgaga ggacggcacg aaatacgcgg agctggtcct ggagcgcgcc
661 ctagattggg aacgggagcc aagtgtccag ttggtactga ccgcacttga tggaggaacc
721 ccagctcgct ccgccaccct tccaattcgt atcacagtgc tggacgcgaa tgacaatgct
781 cctgccttca atcagtcttt gtatagggcg cgcgtccggg aggatgcacc cccaggcacg
841 cgcgtcgccc aggttcgtgc aactgacctg gatgagggcc tcaatggaga aatcgtttac
901 tccttcggca gccacaatcg tgctggggtg cgggaactat tcgctttaga cctcgtaacc
961 ggggtgctga caatcaaggg tcgcctggac tttgaagaca ccaaactcca tgagatttac
1021 atccaggcca aagacaaagg tgccaatccg gaaggagcgc attgcaaagt actggtagag
1081 gttgtggacg ttaatgacaa tgccccggag atcacagtca cctctgtata cagcccagtc
1141 cctgaggatg ctcctctggg gactgtcatt gctttgctca gtgtgactga tctggatgct
1201 ggagagaacg ggcaggtgac ctgcgaggtt cccccgggtc tccccttcag cctgacttct
1261 tccctcaaga attacttcac tttgaaaacc agtgcagccc tggatcgtga gaccgtgccc
1321 gaatacaatc tcagtatcac agctcgagac tcgggaactc cctctctctc agctcttaca
1381 acagtcaggg tccaagtgtc cgatatcaac gacaatcctc ctcagtcatc ccaatcctcc
1441 tacgatgtgt atgtggagga aaataaccta cccggagttc ctatattaaa cctaagtgtc
1501 tgggaccccg acgccccgcc caatgcccgc ctttctttct ttctcttgga acccggagcg
1561 gaaactggtc tcgtaggtcg ctatttcaca ataaatcgtg acaatggaat cttgacaacc
1621 ttagtacccc tggactatga ggatcagaga gagttccagc taaccgctca tataaacgac
1681 ggaggtaccc cggttttggc caccaacatc agcgtgaaca tatttgttac tgaccgcaat
1741 gacaacgccc cccaggtcct gtatccccgg cctggccaga gttcagtgga ggtgctgcct
1801 cgaggtacag cggcgggcca cgtggtctca cgggtggtag gctgggacgc agatgcaggg
1861 cacaatgcct ggctctccta cagcctcatg ggagccccca accagagcct ttttgccgtg
1921 gggcttcaca cgggtcagat cagcactgcc cgcccaatcc aggacacaga ttcaccaaga
1981 cagattctca cagtcttgat ctcagacaat ggagaaccat tgctctccac caccgccacc
2041 ctgactgtgt cagtaactga ggagtctccg gaagcccggg ccgagttccc ttctggctca
2101 gctccccgag aacagaacaa aaatctcacc ttttatctac ttctttctct aatcttagtc
2161 tctgtgggat tcgcagttac agtgttggga gtgatcatat tcaaagttta caagtggaag
2221 cggtctaggg acctctaccg agccccagtg agctccctgt accgaacccc agtgtcctcc
2281 ttgcacgcag acgcggtgcg aggaggccta atgccgccgc acctgtacca tcaggtgtac
2341 ctcaccacgg actctcgccg cagcgaccca ctgctgaaga agcctggtgc ggccagccca
2401 ctggccagcc gccagaacac gctgcgaagt tgtgatcccg tgttctatag acaggtgttg
2461 ggtgcagaga gcgccccccc tggacagcaa gccccgccca acactgactg gcgtttctct
2521 caagcccaga gacccggcac gagcggatcc caaaatgggg atgaaaccgg cacctggccc
2581 aacaaccagt tcgatacaga gatgctgcaa gccatgatct tggcctctgc cagtgaagcc
2641 gctgatggga gctccactct gggagggggc actggcacta tgggtttgag cgctcgatat
2701 ggaccccagt ttaccctgca gcacgtgcct gactaccgcc agaacgtgta catccctggc
2761 agcaatgcca cactgaccaa cgcagctggc aaacgagatg gcaaggctcc ggcaggcggc
2821 aatggcaaca agaagaagtc gggcaagaaa gagaagaagt aatatggagg ccaggccttg
2881 agccacaggg cagcctccct ccccagccag tccagcttgt ccttacttgt acccaggcct
2941 cagaatttca gggctcaccc caggattctg gtaggagcca cagccaggcc atgctccccg
3001 ttgggaaaca gaaacaagtg cccaagccaa caccccctct ttgtacccta ggggggttga
3061 atatgcaaag agagttctgc tgggaccccc tatccaatca gtgattgtac ccacataggt
3121 agcagggtta gtgtggatac acacacacac acacacacac acacacacac acacacaaac
3181 accatgccac actcccctag ttacagctga actccccatc ttccaaccca gtcaggctca
3241 ttcatctcca gcctccctct ccccacccca ccctttcagt caacaccctc tctttgagcc
3301 aggtagttgg gctgttgggg tgacaggtga gctaaggggg ctcctagttc tgaacaggtg
3361 ggagagtatt acaatccttt ggcctctcct tcagttcagc tgtcccccaa agcatggttt
3421 ggtaccagtc ttctcatttc ctcctagagc ctgagaccaa tgcttaagtt ttggggaaca
3481 gtcaccatgc ccctggtact gatgatgctt gctggatttt tgggaaggca ttttgctact
3541 aagcctcttt tcaatgcctg gggactacca gtcttctgtt ctccattgtt tgatgttccc
3601 actgcatgct gtgacttcct actcctcaaa gaagagactc ctttgcatgt ctggagacag
3661 tagggggtgg taaactaaag ggaagctgag tgtatactgc tgggagtggg ggcagtggac
3721 aaaacagcct gttaataggg tcttgcaagg ggctctgtac gtacccaggg tactggctca
3781 atcctcaaat tctagccata gacaaacatc aggccagacc cctccctcct ggttcagcct
3841 gggcagcttg ggctgagcca ccaggaccaa tggatttaag ctgacatttc agtccaagaa
3901 gacttctaag tgagtttaag accagagagg aaagaggggc ctctgtgggt gctgggtact
3961 ccagaggtgc ccttggtggg agggtcagtg gtcctagcag gaagggagcc cagcaaggtc
4021 attcttggac cctgggtcta gtccggtagc tagaacaagg gaccaagtgg ctataaagtc
4081 tcagccaatg atgaggcttt tcccctgggc ctctgggccc ctgtattcct caagcccctg
4141 gcctccacct taccaggtgc catttctcag aaggccactg cccaggcccc caggccgccc
4201 cctcgtggcc acagaccggt taaagccccc cagtgcctcc ttgtgcatag aacttcctct
4261 gcccgagccc ttacagtagt gtagaagccc ccttcctcct cccgctggtg tagaatagcc
4321 aatagtatag tgtggtgtgc ttttacgtga tggcgagtgg gcagcgggcg gtgggctgtg
4381 cgcagccgtc tgtcctttga atctcaatct gcctgcgcgg ccagtgctgt gttttgtgct
4441 gtgtccacac gctgcggcga cccctccctg tactgacttc tctataaaag cttctcttcg
4501 catagtcacg tagctcctgc ccatccccct tccgatatct ctcgcaagtt ttatactcta
4561 atatttatat ggcttttttc ttcgaaaatt aaaaataaaa aatggtttct tctg
//