LOCUS AY574027 4714 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma b8 (Pcdhgb8) mRNA, complete
cds.
ACCESSION AY574027
VERSION AY574027.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4714)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 4714)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 4714)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 4714)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..4714
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..4714
/gene="Pcdhgb8"
CDS 173..2962
/gene="Pcdhgb8"
/note="PCDHGB8; a member of the protocadherin gamma
cluster"
/codon_start=1
/product="protocadherin gamma b8"
/protein_id="AAT77608.1"
/translation="MERSVKLGSRTLWRQVLFPFLLPLFCTGLAEQVRYSIPEEMAMG
SVVGNLAEDLGLPVQDLLIRNLRVISEKPYLTVNPENGNIVVSDKIDRELLCFQSPLC
VLPLEIVAENPLNVFHVSVVIEDINDNPPRFLQNRIVLQINEFAIPGTRFGLESAIDA
DVGPNSLQSYQLSLNEHFSLVVKDKTEGKDAPELVLEKPLDREKQSSQLLVLTAVDGG
EPVLTGTAQIQIEVTDANDNPPVFSQSTYKVSLRENMPSGTSVLTVMATDPDEGVNAE
ITYSFKSLGEDIRSKFILDHQSGEIKSKGPIDFEARRTYTMNIEAKDGGGMATECKVV
IEILDENDNAPEVVFTSVSNSITEDAEPGTVVALFKTYDKDAEENGRVSCFVKETVPF
RIESSASNYYKLVTDGILDREQTPEYNVTIVATDKGKPSLSSSTSVTLHVGDVNDNAP
VFHQASYLIQVAENNPPGASIAQVSASDPDLGSNGLISYSIIASDLEPKSLWSYVSVN
RDSGVVFAQRAFDHEQLRSFQLTLQARDQGSPALSANVSMRVLVGDRNDNAPRVLYPA
LEPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASDPGLFSLGLRTG
EVRTARALGDRDSARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPELRDEPLPS
DPQNELQFYLVVALALVSVLFLFVVILAIALRLRQSQGPAVSGCFQSGLCCKTRPGVS
LNYSEGTLPYSYNLYVASNCQKMSQFLTLTPEMAPPRDLCMEASVPVSVTEENNKIVS
DSIASNHQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASASEA
ADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA
GGNGNKKKSGKKEKK"
BASE COUNT 1108 a 1289 c 1204 g 1113 t
ORIGIN
1 ggttgaaatt gtatacattc actggaggct taaagagtga ggggggcttg aatttcctgc
61 gtggaaaatc agattagaga ctgcgatatc ctcaaacttg gcgcatttgg gttttcttcc
121 tggtggaagt aattcgtgaa gcctcttccc ttcacaccgg tgcaggagaa agatggagcg
181 cagcgtgaag ctagggagca ggaccctgtg gaggcaagta ctctttccct tcttgctgcc
241 tttgttctgc acggggcttg cagagcaagt ccgctactct attccggaag aaatggccat
301 gggttcggtc gtgggaaacc tcgctgagga cctggggctg cctgttcagg acttactgat
361 tcgcaatctt agagttatct cggagaaacc gtatcttact gtgaaccccg agaacgggaa
421 catagttgtg agcgacaaaa tagatcgaga gttactctgc ttccaaagcc ctctgtgtgt
481 cctgccctta gagattgtgg cagaaaatcc cctaaacgtt tttcacgtca gtgtagtgat
541 agaagatata aatgataacc ctccccgttt cctccaaaat aggattgttt tgcaaatcaa
601 tgaatttgca attccaggca ctaggtttgg cctggagtct gccatagacg cagatgtagg
661 accgaactct ctccagagtt accagctcag tttgaatgag cacttctctc tggtggtgaa
721 ggacaagact gaaggaaagg atgccccaga attagtgttg gagaaacctc tggacaggga
781 aaagcagagc tcccagctct tggtcctaac agcagtggat gggggagaac cagtcctaac
841 tggtactgct cagattcaaa tcgaagtcac tgatgccaat gataaccccc cagtgttcag
901 ccaaagtaca tacaaagtca gtcttcgaga gaacatgccc tcaggcacct ctgtgctaac
961 agtgatggct actgacccgg atgagggtgt caatgcagaa atcacctact ccttcaaatc
1021 actaggagaa gatattagaa gtaagtttat cctagatcat caaagtggag aaattaaatc
1081 caaaggccct atagactttg aggccaggag gacttacacc atgaacatag aggccaagga
1141 tggtggcggc atggccacag aatgtaaagt tgtaatagaa attctcgatg agaacgacaa
1201 tgccccagaa gtggttttta cctctgtgtc caattctata accgaagatg cagaaccggg
1261 gacagtggtg gctctgttca aaacatacga taaagatgca gaagaaaatg gaagagtgag
1321 ttgcttcgta aaagaaacag ttccttttag aattgagtcg tctgccagca attactataa
1381 gcttgtaaca gatgggatcc tggaccggga gcagactcca gagtacaatg tcaccatcgt
1441 cgccactgat aaaggcaagc cctctctctc ttccagcaca agtgttaccc tgcatgttgg
1501 ggatgtcaat gacaatgctc cagttttcca ccaggcctcc tatttgatcc aagtagctga
1561 aaataaccct ccgggagctt ccattgctca ggtcagcgcc tccgacccgg atttgggatc
1621 caatggtctc atctcctact ccatcatagc cagcgacctt gaacctaaat cactgtggtc
1681 ctatgtgtct gtgaaccggg acagtggggt ggtgttcgcg cagcgcgcct tcgaccacga
1741 gcagctgcgc tccttccagc tgacactgca ggcgcgcgac cagggatcgc ccgcgctcag
1801 cgccaacgtg agcatgcgcg tgctggtggg cgaccgcaat gacaacgcgc cacgcgtgct
1861 gtatcccgct ctcgagccgg acggctctgc gctcttcgac atggtgcctc gcgctgccga
1921 gcccggatac ttggtcacga aggtggtggc tgtggacgca gactcaggac acaatgcctg
1981 gctgtcttac cacgtgctac aggccagcga tcccgggctc ttcagcttgg ggctgcgcac
2041 aggcgaggtc cgcacagccc gtgccctggg agacagggac tcagcgcgac agcgcctact
2101 ggtcgctgtg cgtgatggtg gacagccgcc cctctcggct acagccacgc tgcacctgat
2161 cttcgctgac agcctgcagg aggtcctccc agaactcaga gatgagcctt tgccgtctga
2221 cccccagaat gagcttcagt tttacctggt ggtggccttg gccttagtct cagtgctctt
2281 tcttttcgtt gtgattctgg caatcgccct tcgccttcgg cagtcccagg gtcctgctgt
2341 ctcgggctgt tttcagtcag gcctttgctg taagacgaga ccaggggttt ctctcaacta
2401 cagcgagggg actcttcctt attcctacaa tctctacgtt gcctccaatt gtcaaaaaat
2461 gtctcaattt cttaccttga cgccagaaat ggcccctccg cgagatcttt gtatggaagc
2521 ttccgtgcca gtgagtgtca ctgaggagaa taacaagata gtctctgatt ctattgcttc
2581 taaccaccaa gccccgccca acactgactg gcgtttctct caagcccaga gacccggcac
2641 gagcggatcc caaaatgggg atgaaaccgg cacctggccc aacaaccagt tcgatacaga
2701 gatgctgcaa gccatgatct tggcctctgc cagtgaagcc gctgatggga gctccactct
2761 gggagggggc actggcacta tgggtttgag cgctcgatat ggaccccagt ttaccctgca
2821 gcacgtgcct gactaccgcc agaacgtgta catccctggc agcaatgcca cactgaccaa
2881 cgcagctggc aaacgagatg gcaaggctcc ggcaggcggc aatggcaaca agaagaagtc
2941 gggcaagaaa gagaagaagt aatatggagg ccaggccttg agccacaggg cagcctccct
3001 ccccagccag tccagcttgt ccttacttgt acccaggcct cagaatttca gggctcaccc
3061 caggattctg gtaggagcca cagccaggcc atgctccccg ttgggaaaca gaaacaagtg
3121 cccaagccaa caccccctct ttgtacccta ggggggttga atatgcaaag agagttctgc
3181 tgggaccccc tatccaatca gtgattgtac ccacataggt agcagggtta gtgtggatac
3241 acacacacac acacacacac acacacacac acacacaaac accatgccac actcccctag
3301 ttacagctga actccccatc ttccaaccca gtcaggctca ttcatctcca gcctccctct
3361 ccccacccca ccctttcagt caacaccctc tctttgagcc aggtagttgg gctgttgggg
3421 tgacaggtga gctaaggggg ctcctagttc tgaacaggtg ggagagtatt acaatccttt
3481 ggcctctcct tcagttcagc tgtcccccaa agcatggttt ggtaccagtc ttctcatttc
3541 ctcctagagc ctgagaccaa tgcttaagtt ttggggaaca gtcaccatgc ccctggtact
3601 gatgatgctt gctggatttt tgggaaggca ttttgctact aagcctcttt tcaatgcctg
3661 gggactacca gtcttctgtt ctccattgtt tgatgttccc actgcatgct gtgacttcct
3721 actcctcaaa gaagagactc ctttgcatgt ctggagacag tagggggtgg taaactaaag
3781 ggaagctgag tgtatactgc tgggagtggg ggcagtggac aaaacagcct gttaataggg
3841 tcttgcaagg ggctctgtac gtacccaggg tactggctca atcctcaaat tctagccata
3901 gacaaacatc aggccagacc cctccctcct ggttcagcct gggcagcttg ggctgagcca
3961 ccaggaccaa tggatttaag ctgacatttc agtccaagaa gacttctaag tgagtttaag
4021 accagagagg aaagaggggc ctctgtgggt gctgggtact ccagaggtgc ccttggtggg
4081 agggtcagtg gtcctagcag gaagggagcc cagcaaggtc attcttggac cctgggtcta
4141 gtccggtagc tagaacaagg gaccaagtgg ctataaagtc tcagccaatg atgaggcttt
4201 tcccctgggc ctctgggccc ctgtattcct caagcccctg gcctccacct taccaggtgc
4261 catttctcag aaggccactg cccaggcccc caggccgccc cctcgtggcc acagaccggt
4321 taaagccccc cagtgcctcc ttgtgcatag aacttcctct gcccgagccc ttacagtagt
4381 gtagaagccc ccttcctcct cccgctggtg tagaatagcc aatagtatag tgtggtgtgc
4441 ttttacgtga tggcgagtgg gcagcgggcg gtgggctgtg cgcagccgtc tgtcctttga
4501 atctcaatct gcctgcgcgg ccagtgctgt gttttgtgct gtgtccacac gctgcggcga
4561 cccctccctg tactgacttc tctataaaag cttctcttcg catagtcacg tagctcctgc
4621 ccatccccct tccgatatct ctcgcaagtt ttatactcta atatttatat ggcttttttc
4681 ttcgaaaatt aaaaataaaa aatggtttct tctg
//