LOCUS AY574020 4732 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma a9 (Pcdhga9) mRNA, complete
cds.
ACCESSION AY574020
VERSION AY574020.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4732)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 4732)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 4732)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 4732)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..4732
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..4732
/gene="Pcdhga9"
CDS 185..2980
/gene="Pcdhga9"
/note="PCDHGA9; a member of the protocadherin gamma
cluster"
/codon_start=1
/product="protocadherin gamma a9"
/protein_id="AAT77602.1"
/translation="MAAPARRPHCTRLVLLCALLGMLWEARARQIHYSVPEETEKGYT
VGNISKDLGLEPRELAERGVRIISKGKTQFFSLSPRSGCLVTAGRIDREELCARIAPC
VLSFKVLVEDRVKLYGVEVEVIDINDNAPKFEAENLVVKISEIAAPGARYPLPEAVDP
DVGINSLQSYQLSPNRHFSLDIQRGDDGTINPELVLERTLDREEEPSHHLVLTASDGG
DPRRSSTALIQVTVLDTNDNAPAFDQPVNRVKVLENVAPGTLLLTVRASDPDEGANGK
VTYKFRKMNEKQSLLFHLHENTGEMTVAKTLDYEECSLYEMEIQAEDGGGLKGRTKVV
VTVEDVNDNRPEVTITSLFSPVREDAPPGTVIVLFNAHDQDSGKNGQVVCSIQENPSF
KLENSVDDYYRLMTAQILDREKASEYNITVTATDRGTPSMSTEVQITLYVADINDNPP
AFSQTSYSVYLPENNPRGTSIFSVSAHDPDENENAKVTYSLVENTIQGAPLTSYISIN
SDTGVLYALQSFDYEQFRNLQMQVKASDSGHPPLSSNVSLSVFLLDQNDNAPKILYPS
LPTDGSTGVELAPRSAEAGYLVTKVVAVDEDSGQNAWLSYRLLKASEPGLFTVGLRSG
EVRTARALLERDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPDILADLSSISTPA
DPDSDITLYLVVAVAVVSCVFLLFVLVLLALRLRRWHASSLLQDAIGGSTGVPTSHIV
GVHGVQTFLQTYSQEFSLTPDSGKSHLIFPQPNYADTLISQESCGKSEPLCSSVESKF
PIDDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASAS
EAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
PAGGNGNKKKSGKKEKK"
BASE COUNT 1139 a 1330 c 1201 g 1062 t
ORIGIN
1 cctgtcacac aaagctctgc aggtcctaca aactggttcc cggactatag caaaactcaa
61 ccttctaact tggaaccctc ctgctttctc ctgaggaata agtatcatct ggcagttgga
121 agaagaaaag aagagcctaa ggagttagcg agcattctga gaaaattccg tagcgaaagc
181 aacaatggct gccccagcca gacgcccgca ctgcacaaga ctggtcctct tgtgtgcgct
241 gctggggatg ctgtgggagg ccagggccag gcagatccac tattccgtgc cagaagagac
301 agaaaagggc tatacagtgg gaaacatctc taaggacctg ggactggaac cccgtgagct
361 ggcggagcgt ggagtccgca tcatctccaa aggtaagacc cagtttttct ctctgagccc
421 gcggagcggt tgcttggtca ccgcaggccg gatagaccgg gaggagctgt gtgctcggat
481 cgctccctgc gtcctaagct ttaaagtcct agttgaagac agagtgaaac tttatggggt
541 agaagtagaa gtgattgata tcaatgacaa tgcgccaaaa tttgaagccg aaaatttagt
601 cgtaaaaatc agcgaaatcg ctgcccctgg agcacggtat ccactcccag aagcggttga
661 cccagatgtg ggcataaact ccctccagag ttaccagctc agccccaacc ggcacttctc
721 tctggacatt caaaggggag acgacggaac aataaaccca gagttggtgc tggagcgcac
781 cctggaccga gaggaagagc cctctcacca cctggtcctc accgcctccg atggcggcga
841 cccgcgccgc tccagcacag cgctcatcca ggtcacagtg ttggatacca acgacaatgc
901 ccctgctttc gaccaaccgg ttaaccgcgt gaaagtcctc gagaacgtgg ccccgggcac
961 cctgctgctc acggtgagag ctagcgaccc ggacgagggt gccaatggga aggtgacata
1021 caaattccgg aaaatgaatg aaaaacagtc gctgttattc catcttcatg aaaacacggg
1081 ggaaatgaca gtagcgaaaa ctctggacta tgaagaatgc tcattgtatg aaatggaaat
1141 acaggctgaa gatggcgggg gactgaaagg gcggaccaaa gtggtagtta cggtagaaga
1201 tgtaaatgac aaccggccgg aagtgaccat tacatctctg tttagcccag taagggaaga
1261 tgcgccccca gggacagtaa tcgtcctttt caacgctcat gaccaagatt ctgggaagaa
1321 tgggcaagtt gtctgttcca tccaggagaa cccatctttt aaattagaaa actcagtaga
1381 cgattactat aggttgatga cagcccagat tcttgaccga gaaaaggctt ctgagtataa
1441 catcacagtg acagcaacag acaggggaac cccatccatg tccacagagg ttcagatcac
1501 cctgtatgtg gcggacatca acgacaatcc gcctgccttc tctcaaacct cctactcagt
1561 ctatctccct gaaaacaacc ccagaggcac ctccatcttc tcagttagcg cccatgatcc
1621 tgatgaaaat gagaatgcga aggttactta ctctttggtg gaaaacacca tccagggggc
1681 accactcacc tcctacatct ccattaactc tgacaccggt gtgctctatg ctctgcaatc
1741 ctttgactat gagcagtttc gaaatctgca gatgcaggtg aaggcaagcg acagcgggca
1801 tccgccactc agcagtaatg tgtccctgtc tgtgtttcta ttggatcaga atgacaatgc
1861 tcccaagatc ctctatccct ccctcccgac tgatggctcc actggtgtag agctggctcc
1921 ccgctctgcc gaggctgggt atctggtgac caaggtggta gcagtggacg aagactctgg
1981 acagaacgct tggttatctt accgcctgct caaggctagt gagccgggac ttttcacagt
2041 ggggctccgt tcaggtgaag tccgcacagc tcgcgccctg ctagagagag atgcactcaa
2101 gcaaagcctc gtggtagctg tgcaggatca tggccagccc cctctttctg ctacggtcac
2161 tctcacagtg gctgtggcag acagcatccc cgacatcctg gctgacttga gcagtatcag
2221 cactcctgca gaccctgatt ccgatattac tctctacctg gtggtagcag ttgctgtggt
2281 ctcctgtgtc ttcctactct ttgtactggt gctgctggca cttaggctac ggcgctggca
2341 tgcgtcgagc ctgctgcagg atgcaatagg tggatccact ggggtaccaa catcacatat
2401 tgtgggtgtg catggggttc agactttcct acaaacctat tctcaagagt tttccctcac
2461 acctgactct gggaagagcc acttgatctt cccccagccc aactatgccg acacgctcat
2521 cagccaggag agctgtggga aaagcgagcc tctgtgcagc tcggttgagt ccaagtttcc
2581 tattgatgac actcccttgg ttcctcaagc cccgcccaac actgactggc gtttctctca
2641 agcccagaga cccggcacga gcggatccca aaatggggat gaaaccggca cctggcccaa
2701 caaccagttc gatacagaga tgctgcaagc catgatcttg gcctctgcca gtgaagccgc
2761 tgatgggagc tccactctgg gagggggcac tggcactatg ggtttgagcg ctcgatatgg
2821 accccagttt accctgcagc acgtgcctga ctaccgccag aacgtgtaca tccctggcag
2881 caatgccaca ctgaccaacg cagctggcaa acgagatggc aaggctccgg caggcggcaa
2941 tggcaacaag aagaagtcgg gcaagaaaga gaagaagtaa tatggaggcc aggccttgag
3001 ccacagggca gcctccctcc ccagccagtc cagcttgtcc ttacttgtac ccaggcctca
3061 gaatttcagg gctcacccca ggattctggt aggagccaca gccaggccat gctccccgtt
3121 gggaaacaga aacaagtgcc caagccaaca ccccctcttt gtaccctagg ggggttgaat
3181 atgcaaagag agttctgctg ggacccccta tccaatcagt gattgtaccc acataggtag
3241 cagggttagt gtggatacac acacacacac acacacacac acacacacac acacaaacac
3301 catgccacac tcccctagtt acagctgaac tccccatctt ccaacccagt caggctcatt
3361 catctccagc ctccctctcc ccaccccacc ctttcagtca acaccctctc tttgagccag
3421 gtagttgggc tgttggggtg acaggtgagc taagggggct cctagttctg aacaggtggg
3481 agagtattac aatcctttgg cctctccttc agttcagctg tcccccaaag catggtttgg
3541 taccagtctt ctcatttcct cctagagcct gagaccaatg cttaagtttt ggggaacagt
3601 caccatgccc ctggtactga tgatgcttgc tggatttttg ggaaggcatt ttgctactaa
3661 gcctcttttc aatgcctggg gactaccagt cttctgttct ccattgtttg atgttcccac
3721 tgcatgctgt gacttcctac tcctcaaaga agagactcct ttgcatgtct ggagacagta
3781 gggggtggta aactaaaggg aagctgagtg tatactgctg ggagtggggg cagtggacaa
3841 aacagcctgt taatagggtc ttgcaagggg ctctgtacgt acccagggta ctggctcaat
3901 cctcaaattc tagccataga caaacatcag gccagacccc tccctcctgg ttcagcctgg
3961 gcagcttggg ctgagccacc aggaccaatg gatttaagct gacatttcag tccaagaaga
4021 cttctaagtg agtttaagac cagagaggaa agaggggcct ctgtgggtgc tgggtactcc
4081 agaggtgccc ttggtgggag ggtcagtggt cctagcagga agggagccca gcaaggtcat
4141 tcttggaccc tgggtctagt ccggtagcta gaacaaggga ccaagtggct ataaagtctc
4201 agccaatgat gaggcttttc ccctgggcct ctgggcccct gtattcctca agcccctggc
4261 ctccacctta ccaggtgcca tttctcagaa ggccactgcc caggccccca ggccgccccc
4321 tcgtggccac agaccggtta aagcccccca gtgcctcctt gtgcatagaa cttcctctgc
4381 ccgagccctt acagtagtgt agaagccccc ttcctcctcc cgctggtgta gaatagccaa
4441 tagtatagtg tggtgtgctt ttacgtgatg gcgagtgggc agcgggcggt gggctgtgcg
4501 cagccgtctg tcctttgaat ctcaatctgc ctgcgcggcc agtgctgtgt tttgtgctgt
4561 gtccacacgc tgcggcgacc cctccctgta ctgacttctc tataaaagct tctcttcgca
4621 tagtcacgta gctcctgccc atcccccttc cgatatctct cgcaagtttt atactctaat
4681 atttatatgg cttttttctt cgaaaattaa aaataaaaaa tggtttcttc tg
//