LOCUS AY574019 4689 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma a8 (Pcdhga8) mRNA, complete
cds.
ACCESSION AY574019
VERSION AY574019.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4689)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 4689)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 4689)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 4689)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..4689
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..4689
/gene="Pcdhga8"
CDS 139..2937
/gene="Pcdhga8"
/note="PCDHGA8; a member of the protocadherin gamma
cluster"
/codon_start=1
/product="protocadherin gamma a8"
/protein_id="AAT77601.1"
/translation="MAASQNQHRHGRLVLFCTLMGTLCKIGVGQIRYSVPEETDKGTV
VGNISKDLGLEPRELAERGVRIVSRGRSQLFSLNPRGGSLVTASRIDREELCAQSIPC
LVNINILVEEKGKLFGVEIEITDINDNNPKFHVGDLEVKINEIAAPGARYPLPKAVDP
DVGINSLQSYQLSPNRHFSLDIQRGDDGTINPELVLEHTLDREEEPSHHLVLTASDGG
DPRRSSTALIQVTVLDTNDNAPVFDQPVYRVKVLENVAPGTLLLTVRASDPDEGANGK
VTYKFQKINDKQSLLFHLHENTGEMTVAKNLDYEECSLYEMEIQAEDVGALLGRSKVV
IMVEDVNDNRPEVTITSLFNPVLENSLPGTVIAFLNVHDRDSGKNGQVVCYTHDNLPF
KLEKSIDNYYRLVTWKYLDREKVSIYNITVIASDLGAPPLSTETYIALIVADTNDNPP
RFPHTSYTAYIPENNLRGASIFSLTAHDPDSQENAQVTYSVSEDTIQGVPLSSYISIN
SDTGVLYALHSFDFEKIQDLQLLVVATDSGSPPLSSNVSLSLFVLDQNDNAPEILYPS
FPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFSVGLHTG
EVRTARALLDRDALKQNLVMAVQDHGQPPLSATVTLTVAVANSIPEVLADLSSIRTPG
VPEDSDITLHLVVAVAVVSCVFLVFVIVLLALRLQRWQKSRQLQGSKGGLAPAPPSHF
VGIDGVQAFLQTYSHEVSLTSGSQTSHIIFPQPNYADMLINQEGCEKNDSLLTSIDFH
ESKDEDACAPQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASA
SEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK
APAGGNGNKKKSGKKEKK"
BASE COUNT 1141 a 1286 c 1169 g 1093 t
ORIGIN
1 ggaactgcgg agaaattctg tccctccgtg tatggctctc cagctttccg taagattatc
61 atttccatca tcacaagcca aggtaatcca ggcacctgag cccggtgaag actgagagga
121 ttcttttgac aataaacaat ggctgcttcc cagaatcaac accgtcatgg ccggctggtg
181 ctgttctgta cgctgatggg gacgctgtgc aagatcgggg taggtcagat tcgctactcg
241 gtgccagaag agacagataa aggcactgtt gtaggaaaca tctccaagga cctggggctg
301 gagccccgcg agctggcgga gcgaggggtc cgcatcgtct ctagaggtag gtcgcagctt
361 ttctccctga atccgcgggg cggcagcttg gtcaccgcga gcaggataga ccgggaggag
421 ctgtgcgccc agagtattcc ctgtcttgta aatattaaca tcctagttga ggagaaaggg
481 aaactctttg gagtagaaat cgaaataact gatattaacg ataataatcc gaagttccat
541 gttggggatc tggaggtgaa aattaacgaa atcgctgccc ctggagcacg gtatccactt
601 ccaaaagctg ttgacccaga tgtgggcata aactccctcc agagttacca gctcagcccc
661 aaccggcact tctctctgga cattcagagg ggagacgacg gaactataaa cccagagctg
721 gtgctggagc acaccctgga ccgagaggaa gagccctctc accacctggt cctcaccgcc
781 tccgatggcg gcgacccgcg ccgctccagc acagcgctca tccaggtcac agtgttggat
841 accaacgaca atgcccctgt tttcgaccaa ccggtttacc gcgtgaaagt cctcgagaac
901 gtggccccag gcactctgct gctcacagtg agagctagcg acccggatga gggtgccaac
961 ggaaaagtga catataaatt ccaaaaaatc aatgacaaac aatcgctatt attccatctt
1021 catgaaaaca cgggggaaat gacagtagca aagaatctgg actatgaaga atgctcattg
1081 tatgaaatgg aaatacaggc tgaagatgtg ggggcgcttc tggggaggag caaagtggta
1141 attatggtag aagatgtaaa tgacaatcgg ccagaagtga ccattacatc cttgtttaac
1201 ccggtattgg aaaattctct tcccgggaca gtaattgcct tcttgaatgt gcatgaccga
1261 gactctggaa agaacggcca agttgtctgt tacacgcatg ataacttacc ttttaaatta
1321 gaaaagtcaa tagataatta ttatagattg gtgacatgga aatatttgga ccgagaaaaa
1381 gtctccatct acaatatcac agtgatagcc tcagatctag gagccccacc tctgtccact
1441 gaaacttaca ttgccctgat tgtggcagac actaatgaca accctcctcg ttttcctcac
1501 acctcctaca cagcctatat tccagagaac aacctgaggg gcgcctccat cttctcactg
1561 actgcacatg atcctgacag tcaggaaaat gcacaggtca cttactctgt gtctgaggac
1621 accatacagg gagtgccttt gtcctcttat atctccatca actcagatac tggtgtcctg
1681 tatgcactgc actcttttga cttcgagaag atacaagact tgcagctact ggttgttgcc
1741 actgacagtg gaagcccacc tctcagcagc aatgtgtcat tgagcttgtt tgtgttggac
1801 cagaacgaca acgcacctga gattctatat cctagcttcc ccacagatgg ctccactggt
1861 gtggaactag caccccgctc tgcagagcct ggatacctag tgaccaaagt ggtggcagtg
1921 gacaaagact caggacagaa tgcttggctg tcctaccgtc tgctgaaggc cagcgaacct
1981 gggctcttct ctgtaggact tcacacgggt gaggtgcgta cagcgagggc cctgctggac
2041 agagatgctc tcaaacagaa tctggtgatg gccgtgcagg accatggcca accccctctc
2101 tcggccactg taactctcac tgtggcagtg gctaacagca tccctgaggt gttggctgac
2161 ttgagcagca ttaggacccc tggggtacca gaggattctg atatcacgct ccacctggtg
2221 gtggcagtgg ctgtggtctc ctgtgtcttc cttgtctttg tcattgtcct cctagctctc
2281 aggcttcagc gctggcagaa gtctcgccag ctccagggct ccaaaggtgg attggctcct
2341 gcacctccat cacattttgt gggcatcgac ggggtacagg cttttctaca aacctattct
2401 catgaagtct cgctcacttc aggctcccag acaagccaca ttatctttcc tcagcccaac
2461 tatgcagaca tgctcattaa ccaagaaggc tgtgagaaaa atgattcctt attaacatcc
2521 atagattttc atgagagtaa ggatgaagat gcttgcgccc cgcaagcccc gcccaacact
2581 gactggcgtt tctctcaagc ccagagaccc ggcacgagcg gatcccaaaa tggggatgaa
2641 accggcacct ggcccaacaa ccagttcgat acagagatgc tgcaagccat gatcttggcc
2701 tctgccagtg aagccgctga tgggagctcc actctgggag ggggcactgg cactatgggt
2761 ttgagcgctc gatatggacc ccagtttacc ctgcagcacg tgcctgacta ccgccagaac
2821 gtgtacatcc ctggcagcaa tgccacactg accaacgcag ctggcaaacg agatggcaag
2881 gctccggcag gcggcaatgg caacaagaag aagtcgggca agaaagagaa gaagtaatat
2941 ggaggccagg ccttgagcca cagggcagcc tccctcccca gccagtccag cttgtcctta
3001 cttgtaccca ggcctcagaa tttcagggct caccccagga ttctggtagg agccacagcc
3061 aggccatgct ccccgttggg aaacagaaac aagtgcccaa gccaacaccc cctctttgta
3121 ccctaggggg gttgaatatg caaagagagt tctgctggga ccccctatcc aatcagtgat
3181 tgtacccaca taggtagcag ggttagtgtg gatacacaca cacacacaca cacacacaca
3241 cacacacaca caaacaccat gccacactcc cctagttaca gctgaactcc ccatcttcca
3301 acccagtcag gctcattcat ctccagcctc cctctcccca ccccaccctt tcagtcaaca
3361 ccctctcttt gagccaggta gttgggctgt tggggtgaca ggtgagctaa gggggctcct
3421 agttctgaac aggtgggaga gtattacaat cctttggcct ctccttcagt tcagctgtcc
3481 cccaaagcat ggtttggtac cagtcttctc atttcctcct agagcctgag accaatgctt
3541 aagttttggg gaacagtcac catgcccctg gtactgatga tgcttgctgg atttttggga
3601 aggcattttg ctactaagcc tcttttcaat gcctggggac taccagtctt ctgttctcca
3661 ttgtttgatg ttcccactgc atgctgtgac ttcctactcc tcaaagaaga gactcctttg
3721 catgtctgga gacagtaggg ggtggtaaac taaagggaag ctgagtgtat actgctggga
3781 gtgggggcag tggacaaaac agcctgttaa tagggtcttg caaggggctc tgtacgtacc
3841 cagggtactg gctcaatcct caaattctag ccatagacaa acatcaggcc agacccctcc
3901 ctcctggttc agcctgggca gcttgggctg agccaccagg accaatggat ttaagctgac
3961 atttcagtcc aagaagactt ctaagtgagt ttaagaccag agaggaaaga ggggcctctg
4021 tgggtgctgg gtactccaga ggtgcccttg gtgggagggt cagtggtcct agcaggaagg
4081 gagcccagca aggtcattct tggaccctgg gtctagtccg gtagctagaa caagggacca
4141 agtggctata aagtctcagc caatgatgag gcttttcccc tgggcctctg ggcccctgta
4201 ttcctcaagc ccctggcctc caccttacca ggtgccattt ctcagaaggc cactgcccag
4261 gcccccaggc cgccccctcg tggccacaga ccggttaaag ccccccagtg cctccttgtg
4321 catagaactt cctctgcccg agcccttaca gtagtgtaga agcccccttc ctcctcccgc
4381 tggtgtagaa tagccaatag tatagtgtgg tgtgctttta cgtgatggcg agtgggcagc
4441 gggcggtggg ctgtgcgcag ccgtctgtcc tttgaatctc aatctgcctg cgcggccagt
4501 gctgtgtttt gtgctgtgtc cacacgctgc ggcgacccct ccctgtactg acttctctat
4561 aaaagcttct cttcgcatag tcacgtagct cctgcccatc ccccttccga tatctctcgc
4621 aagttttata ctctaatatt tatatggctt ttttcttcga aaattaaaaa taaaaaatgg
4681 tttcttctg
//