LOCUS AY574018 4761 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma a7 (Pcdhga7) mRNA, complete
cds.
ACCESSION AY574018
VERSION AY574018.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4761)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 4761)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 4761)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 4761)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..4761
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..4761
/gene="Pcdhga7"
CDS 205..3009
/gene="Pcdhga7"
/note="PCDHGA7; a member of the protocadherin gamma
cluster"
/codon_start=1
/product="protocadherin gamma a7"
/protein_id="AAT77600.1"
/translation="MAPGQRGWGSDYRGFVLLSILLGTRWEAWAGQILYSVSEETDKG
SFVGNITKDLGLQPRELAERGARIITKGKTQLFSLNPRSGSLVTAGRIDREELCTQSP
RCLVSFNILIEDKMNLYPIEVEIMDVNDNAPRFLTEEINVKIMENAAPGMRFPLSEAT
DSDVGKNSLQRYQLSPNHHFSLVVQNGDDGTKYPELVLEKALDREEEGLHHLVLTAYD
GGDPLRSGTASIHVTVVDVNDHTPVFSLPRYQATVPENVPVGTRLLTVNAIDLDEGIY
GEVTYSFWKITPELLQMFHLSSLTGELSTLKGLDYEESSFYELEVQAQDGAGSLTKAK
VLITVLDVNDNAPEVTVTSVSSPIPEDTPPGTVTALFYLQDKDSGKNGEVTCSLPENL
PFKLERSIDNYYRLVTAQNLDREKMSMYNITLKATDGGIPPLSTETHMSIHVSDTNDN
PPTFSDSSYSIYVPENNPRGASIFSVTAQDPDSDKNAQITYALAEDSIQGVPVSSYIS
INSDTGVLYALGSFDYEQFRDLQLQVTARDSGDPPLSSNVSLNLFVLDRNDNAPEILY
PALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGPNAWLSYRLLKASEPGLFSVGLH
TGEVRTARALLDRDALKQNLVVAVQDHGQPPLSATVTLTVAVANSIPDVLADLGSIRT
PSEPDDSDITLYLVVAVATVSCVFLVFVTVLLALRLWRWHKSHMLQASSGGLEDVPAS
HFVGLDGVQAFLQTYSHEVSLTADSRKSHIIFPQPNYVDTLISQDSCEKSDSLLTSID
FQECKGETPSTQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILA
SASEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRD
GKAPAGGNGNKKKSGKKEKK"
BASE COUNT 1174 a 1323 c 1183 g 1081 t
ORIGIN
1 gagttcagac agaaccaccg agtttacaac acaaagaaag gacagactga gacaagcaag
61 ccttcctcca agccgcatca aactcaagcc gaatggctgg attcccggct tcccttccgc
121 acaccaggat attggagaat acaactgggt tctgaagcac attccgagac ctctcagggt
181 gtgagcaaaa tctgcaggac agcaatggcg cccgggcaga ggggctgggg ctcggactac
241 agaggatttg tgctgctctc cattctcctg gggacccggt gggaagcctg ggcaggacag
301 attctctact ccgtgtctga agagacagac aagggatctt ttgtgggaaa tatcaccaag
361 gatctgggat tgcagcctcg ggagctggcg gagcgcggag cccgcatcat caccaaaggt
421 aagacccagc ttttctcact gaacccgcgg agcggcagct tggtcaccgc gggcaggata
481 gaccgtgagg aattgtgcac tcagagcccg cgatgtctcg tgagctttaa catcttgata
541 gaagacaaaa tgaatcttta ccccatagag gtggaaataa tggatgttaa tgacaacgca
601 cccagattct taacagaaga aataaatgta aaaataatgg aaaacgcagc tcctgggatg
661 cggtttccac ttagcgaggc tacagattca gatgtgggca agaactccct ccagagatac
721 cagctcagcc ccaatcacca tttctctctg gttgtgcaga atggagatga tgggaccaag
781 tacccagaac tagtgctgga gaaggctctt gatagggaag aagaggggct tcaccatctg
841 gtcctcacag cctatgatgg cggggatcca ctccgatctg gcaccgccag catccacgtg
901 acagtggtgg atgtgaatga ccacacgcca gtcttctctc tgccccggta tcaagcgaca
961 gtccctgaga acgtgccagt aggcacaaga cttctcacag taaatgctat cgacttggat
1021 gaggggatct atggggaagt gacttactct ttctggaaaa taactccaga acttctgcaa
1081 atgttccatc tgagctccct gacaggagaa ctgtcgacgt taaaaggtct ggattatgaa
1141 gaatccagct tctatgaact ggaagttcag gctcaagatg gggctggaag tctgaccaag
1201 gcaaaagtac tgatcacagt tttggatgtg aatgacaatg ccccagaagt aactgtcaca
1261 tctgtgagca gccccatccc tgaagacaca ccacctggga cagtgaccgc tctcttctac
1321 ctccaagaca aagattcggg gaagaatggc gaggtgacct gctctttgcc agaaaacctg
1381 ccttttaagt tagagcgatc aattgataat tattacaggc tggtcacggc acaaaacctg
1441 gaccgggaaa agatgtctat gtacaacatc acactgaagg ccacagatgg tggaatccct
1501 cccctgtcca ctgaaactca catgtccatt catgtgtcag acaccaacga caacccaccc
1561 accttttctg attcctcgta ctccatctat gtccctgaga acaatcccag aggcgcctcc
1621 atcttctcgg tgactgcaca agaccctgac agtgacaaga atgcccaaat cacttatgct
1681 ctagcagaag acagcatcca gggagtgccg gtgtcctcct acatctccat caactctgac
1741 actggtgtcc tctatgcact tggatccttc gactatgagc agtttcggga tctacaactg
1801 caagtgactg ctcgtgacag tggggaccca cctctcagca gtaatgtgtc attgaacctc
1861 tttgtgctgg acaggaatga taacgcccct gagatcctgt accctgccct ccccactgat
1921 ggttccacag gggtggagct ggctccccgc tctgcagaac ctggatacct agtgaccaaa
1981 gtggtggctg tggacaaaga ctcaggccca aatgcttggc tgtcctaccg cctgcttaaa
2041 gccagtgagc cagggctttt ctcagtaggg ctacacactg gtgaggtgcg cacagcaagg
2101 gctcttctgg acagagacgc acttaaacag aaccttgtag tagccgtaca ggaccatggc
2161 caacccccac tctcagccac agtgacactt actgtggctg tggccaacag catccctgat
2221 gtcctggcag acctaggcag cattaggacc cccagtgaac ctgatgattc agatatcacc
2281 ctctacctgg tggtggcagt ggccactgtt tcttgtgttt tccttgtctt tgtcactgtg
2341 ttattggctc tcagactatg gcgttggcac aaatcacaca tgctacaagc ttcaagtggt
2401 gggctggaag atgtgcctgc ctcacacttt gtaggcttgg atggcgtcca ggctttccta
2461 cagacatatt cccacgaggt ttcactcact gcagactctc gaaagagcca cattatcttc
2521 cctcagccca actacgtgga tacacttatc agtcaagaca gctgtgagaa aagcgattct
2581 ttgttaacat ccatagattt tcaagaatgt aagggtgaaa ccccgagtac ccagcaagcc
2641 ccgcccaaca ctgactggcg tttctctcaa gcccagagac ccggcacgag cggatcccaa
2701 aatggggatg aaaccggcac ctggcccaac aaccagttcg atacagagat gctgcaagcc
2761 atgatcttgg cctctgccag tgaagccgct gatgggagct ccactctggg agggggcact
2821 ggcactatgg gtttgagcgc tcgatatgga ccccagttta ccctgcagca cgtgcctgac
2881 taccgccaga acgtgtacat ccctggcagc aatgccacac tgaccaacgc agctggcaaa
2941 cgagatggca aggctccggc aggcggcaat ggcaacaaga agaagtcggg caagaaagag
3001 aagaagtaat atggaggcca ggccttgagc cacagggcag cctccctccc cagccagtcc
3061 agcttgtcct tacttgtacc caggcctcag aatttcaggg ctcaccccag gattctggta
3121 ggagccacag ccaggccatg ctccccgttg ggaaacagaa acaagtgccc aagccaacac
3181 cccctctttg taccctaggg gggttgaata tgcaaagaga gttctgctgg gaccccctat
3241 ccaatcagtg attgtaccca cataggtagc agggttagtg tggatacaca cacacacaca
3301 cacacacaca cacacacaca cacaaacacc atgccacact cccctagtta cagctgaact
3361 ccccatcttc caacccagtc aggctcattc atctccagcc tccctctccc caccccaccc
3421 tttcagtcaa caccctctct ttgagccagg tagttgggct gttggggtga caggtgagct
3481 aagggggctc ctagttctga acaggtggga gagtattaca atcctttggc ctctccttca
3541 gttcagctgt cccccaaagc atggtttggt accagtcttc tcatttcctc ctagagcctg
3601 agaccaatgc ttaagttttg gggaacagtc accatgcccc tggtactgat gatgcttgct
3661 ggatttttgg gaaggcattt tgctactaag cctcttttca atgcctgggg actaccagtc
3721 ttctgttctc cattgtttga tgttcccact gcatgctgtg acttcctact cctcaaagaa
3781 gagactcctt tgcatgtctg gagacagtag ggggtggtaa actaaaggga agctgagtgt
3841 atactgctgg gagtgggggc agtggacaaa acagcctgtt aatagggtct tgcaaggggc
3901 tctgtacgta cccagggtac tggctcaatc ctcaaattct agccatagac aaacatcagg
3961 ccagacccct ccctcctggt tcagcctggg cagcttgggc tgagccacca ggaccaatgg
4021 atttaagctg acatttcagt ccaagaagac ttctaagtga gtttaagacc agagaggaaa
4081 gaggggcctc tgtgggtgct gggtactcca gaggtgccct tggtgggagg gtcagtggtc
4141 ctagcaggaa gggagcccag caaggtcatt cttggaccct gggtctagtc cggtagctag
4201 aacaagggac caagtggcta taaagtctca gccaatgatg aggcttttcc cctgggcctc
4261 tgggcccctg tattcctcaa gcccctggcc tccaccttac caggtgccat ttctcagaag
4321 gccactgccc aggcccccag gccgccccct cgtggccaca gaccggttaa agccccccag
4381 tgcctccttg tgcatagaac ttcctctgcc cgagccctta cagtagtgta gaagccccct
4441 tcctcctccc gctggtgtag aatagccaat agtatagtgt ggtgtgcttt tacgtgatgg
4501 cgagtgggca gcgggcggtg ggctgtgcgc agccgtctgt cctttgaatc tcaatctgcc
4561 tgcgcggcca gtgctgtgtt ttgtgctgtg tccacacgct gcggcgaccc ctccctgtac
4621 tgacttctct ataaaagctt ctcttcgcat agtcacgtag ctcctgccca tcccccttcc
4681 gatatctctc gcaagtttta tactctaata tttatatggc ttttttcttc gaaaattaaa
4741 aataaaaaat ggtttcttct g
//