LOCUS AY574016 4719 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma a5 (Pcdhga5) mRNA, complete
cds.
ACCESSION AY574016
VERSION AY574016.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4719)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 4719)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 4719)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 4719)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..4719
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..4719
/gene="Pcdhga5"
CDS 169..2967
/gene="Pcdhga5"
/note="PCDHGA5; a member of the protocadherin gamma
cluster"
/codon_start=1
/product="protocadherin gamma a5"
/protein_id="AAT77598.1"
/translation="MADPPRRLICNDLLTFFMLLGTLCAPGNGQIRYSVREELDKGSF
VGNISKDLGLEPRELAERGVRIISRGRSQLFSLNPRGGSLVTAGRIDREELCAQSAPC
LISFNILVENKMKIYEVEVEVLDINDNFPRFRDEELKVKVNENAAAGTRLVLPFARDG
DVGVNSLQGYQLSANPHFSLDVKSGSDGQKHPELVLEQPLDREKESALDLVLTALDGG
NPVHSSTVHISVTVLDANDNAPLFTQSEYRVNVPENTPVGTRLLILTATDADEGINAK
LTFSFRNEEDKISETFQLDSNLGEISTIQSLDYEESSFYLMEVVAQDGGALLASAKVL
VTVQDVNDNAPEVILTSLTSSVSEDCLPGTIIALFSVHDADSGENGEVSCSIPKNLPF
KLEKSVNNYYHLLTTSALDREETSDYNITVTVVDRGTPPLSTENHISLKVADINDNPP
TFSRPSYSTSISENNPRGVSIFSVNAYDADSGDNARITYSLAEYTFQEVPVSSYVSIN
SDTGVLYALQSFDYEHLRDLQLLVTAKDSGNPPLSSNASLSLFVLDQNDNTPEILYPA
IPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFSIGLHTG
EVCTARALLDRDVPKQSLVVAVQDHGQPPLSATVTLTIAVGDSIPDVLTDLGNHNTPA
EPQDSDLTLYLVVSVAVVSCVFLGFVTVLLALRLRHWHMSRLLQTSTGRLASMPASHF
VGMDGVQAYLQTYSHEISLTTDSKKSHLIFPQPNYADRLISEESCEKSEPLLIPDNIH
TSKEEPGAAQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASA
SEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK
APAGGNGNKKKSGKKEKK"
BASE COUNT 1151 a 1339 c 1169 g 1060 t
ORIGIN
1 gaagcagtca taggagcgac cagctagctc ccagcttcct ccgcaccaga gaccagacaa
61 gctcttgggg aaagtcacca tcctaagtcc cgctctcccc agctttagaa aaataaggaa
121 agagcaggct gaaccaggac taagaagaaa gcgaagaaag aaaagacaat ggcggaccca
181 ccgaggcgct tgatctgcaa cgacctgctg acgttcttca tgctgctagg gacgctgtgc
241 gcgccaggaa atgggcagat ccgctactct gtgcgggagg agctagacaa aggctccttc
301 gtgggcaaca tctccaagga cctggggctg gagccccgcg agctggcgga gcgcggggtc
361 cgcatcatct ccagaggtag gtcgcagctt ttctctctga acccgcgagg cggcagcctg
421 gtcaccgcag gaaggataga ccgggaggag ctgtgcgctc agagcgcgcc ctgtctcatc
481 agctttaaca tcttggttga gaataaaatg aaaatttatg aagtagaagt agaagtcctt
541 gatattaatg ataacttccc ccggttccgc gatgaggagt taaaagtaaa ggtaaatgaa
601 aacgcagctg ctggaacacg tttggtgctc cccttcgcga gagatgggga tgtgggtgtg
661 aattccctcc agggttacca gctcagcgcc aacccgcact tctcactgga cgtaaagagt
721 ggatctgacg ggcaaaaaca cccagagttg gtgttggaac agcccctgga ccgtgagaag
781 gagtctgctc tcgacctggt cctcacagct ttggacggcg gaaacccagt acattctagc
841 actgtccata tcagcgtgac cgtcctcgac gcaaatgaca acgcacccct gttcacgcaa
901 agcgaataca gagtgaatgt tccggaaaac acacctgtgg gcactagact cctcatactc
961 accgccacag atgcagacga gggaatcaat gcgaagttga ccttctcttt ccgcaacgaa
1021 gaagataaaa tttctgaaac tttccaactc gattctaatc tgggtgagat ctcaactatt
1081 caatccttgg actatgaaga atccagtttc tatctcatgg aagtggtagc ccaggacggc
1141 ggcgctcttc ttgccagcgc taaggtgttg gtcacagtcc aggacgtgaa tgacaatgct
1201 ccagaagtga tactcacctc cctcaccagt tccgtttccg aagactgtct acccggaacc
1261 ataattgcac ttttcagcgt acatgatgct gattccgggg agaatggaga ggtttcatgt
1321 tctattccca agaaccttcc cttcaaactg gaaaagtcag taaataatta ctaccaccta
1381 ctaacaacaa gcgcactgga tagagaggag acttcggatt ataatatcac agtgaccgtc
1441 gttgatcgcg ggactcctcc cctgtctaca gaaaaccaca tctctctgaa agtagccgac
1501 ataaatgaca acccacccac cttctctcgt ccctcctatt ccacttccat ctcagaaaat
1561 aaccccagag gtgtctccat tttttcggta aatgcctatg atgctgacag cggtgataat
1621 gcccggatca cttactccct ggctgaatat acatttcaag aagtgcccgt gtcctcctac
1681 gtctccatta actctgacac tggagtcctg tatgcactac agtcctttga ctatgagcac
1741 ttgagagacc tgcagctcct ggtgacagct aaggacagtg ggaaccctcc actcagtagc
1801 aatgcctccc tgagcttgtt tgtgctggac cagaatgaca acacgcctga gatcctgtac
1861 ccagctattc ctactgatgg ctccacgggt gtggaactgg caccccgctc tgcagagcct
1921 ggatacctgg taaccaaagt tgtggcagtg gacaaagatt cgggacagaa cgcctggtta
1981 tcctaccgcc tgctcaaggc cagtgaacca gggctcttct caatagggct tcacacgggt
2041 gaggtgtgca cagcaagggc tctattggat agagacgtac ccaagcagag cctggtagtg
2101 gctgtccagg accatggcca gccccctctc tcagccactg tcacactcac tatcgctgta
2161 ggggacagca tcccggatgt actgactgac ttaggcaacc acaacacacc agcagagccc
2221 caggattcag acctcacact ctacctagtg gtatcggtgg cagtggtctc ctgtgtcttt
2281 ctgggatttg ttaccgtgct gttggccctc aggctgaggc actggcacat gtcacgcctg
2341 cttcagactt ccacgggcag attggccagc atgcccgcct cccattttgt gggcatggat
2401 ggggtacagg cttacctgca gacctattcc catgaaatct ctctcactac agactccaaa
2461 aaaagccacc tgatcttccc ccagcccaat tatgctgaca gactcattag tgaagagagc
2521 tgtgaaaaga gtgagcctct tctgatacct gataatatac acacaagcaa ggaagagccc
2581 ggagctgctc agcaagcccc gcccaacact gactggcgtt tctctcaagc ccagagaccc
2641 ggcacgagcg gatcccaaaa tggggatgaa accggcacct ggcccaacaa ccagttcgat
2701 acagagatgc tgcaagccat gatcttggcc tctgccagtg aagccgctga tgggagctcc
2761 actctgggag ggggcactgg cactatgggt ttgagcgctc gatatggacc ccagtttacc
2821 ctgcagcacg tgcctgacta ccgccagaac gtgtacatcc ctggcagcaa tgccacactg
2881 accaacgcag ctggcaaacg agatggcaag gctccggcag gcggcaatgg caacaagaag
2941 aagtcgggca agaaagagaa gaagtaatat ggaggccagg ccttgagcca cagggcagcc
3001 tccctcccca gccagtccag cttgtcctta cttgtaccca ggcctcagaa tttcagggct
3061 caccccagga ttctggtagg agccacagcc aggccatgct ccccgttggg aaacagaaac
3121 aagtgcccaa gccaacaccc cctctttgta ccctaggggg gttgaatatg caaagagagt
3181 tctgctggga ccccctatcc aatcagtgat tgtacccaca taggtagcag ggttagtgtg
3241 gatacacaca cacacacaca cacacacaca cacacacaca caaacaccat gccacactcc
3301 cctagttaca gctgaactcc ccatcttcca acccagtcag gctcattcat ctccagcctc
3361 cctctcccca ccccaccctt tcagtcaaca ccctctcttt gagccaggta gttgggctgt
3421 tggggtgaca ggtgagctaa gggggctcct agttctgaac aggtgggaga gtattacaat
3481 cctttggcct ctccttcagt tcagctgtcc cccaaagcat ggtttggtac cagtcttctc
3541 atttcctcct agagcctgag accaatgctt aagttttggg gaacagtcac catgcccctg
3601 gtactgatga tgcttgctgg atttttggga aggcattttg ctactaagcc tcttttcaat
3661 gcctggggac taccagtctt ctgttctcca ttgtttgatg ttcccactgc atgctgtgac
3721 ttcctactcc tcaaagaaga gactcctttg catgtctgga gacagtaggg ggtggtaaac
3781 taaagggaag ctgagtgtat actgctggga gtgggggcag tggacaaaac agcctgttaa
3841 tagggtcttg caaggggctc tgtacgtacc cagggtactg gctcaatcct caaattctag
3901 ccatagacaa acatcaggcc agacccctcc ctcctggttc agcctgggca gcttgggctg
3961 agccaccagg accaatggat ttaagctgac atttcagtcc aagaagactt ctaagtgagt
4021 ttaagaccag agaggaaaga ggggcctctg tgggtgctgg gtactccaga ggtgcccttg
4081 gtgggagggt cagtggtcct agcaggaagg gagcccagca aggtcattct tggaccctgg
4141 gtctagtccg gtagctagaa caagggacca agtggctata aagtctcagc caatgatgag
4201 gcttttcccc tgggcctctg ggcccctgta ttcctcaagc ccctggcctc caccttacca
4261 ggtgccattt ctcagaaggc cactgcccag gcccccaggc cgccccctcg tggccacaga
4321 ccggttaaag ccccccagtg cctccttgtg catagaactt cctctgcccg agcccttaca
4381 gtagtgtaga agcccccttc ctcctcccgc tggtgtagaa tagccaatag tatagtgtgg
4441 tgtgctttta cgtgatggcg agtgggcagc gggcggtggg ctgtgcgcag ccgtctgtcc
4501 tttgaatctc aatctgcctg cgcggccagt gctgtgtttt gtgctgtgtc cacacgctgc
4561 ggcgacccct ccctgtactg acttctctat aaaagcttct cttcgcatag tcacgtagct
4621 cctgcccatc ccccttccga tatctctcgc aagttttata ctctaatatt tatatggctt
4681 ttttcttcga aaattaaaaa taaaaaatgg tttcttctg
//