LOCUS AY574014 4712 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma a3 (Pcdhga3) mRNA, complete
cds.
ACCESSION AY574014
VERSION AY574014.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4712)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 4712)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 4712)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 4712)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..4712
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..4712
/gene="Pcdhga3"
CDS 171..2960
/gene="Pcdhga3"
/note="PCDHGA3; a member of the protocadherin gamma
cluster"
/codon_start=1
/product="protocadherin gamma a3"
/protein_id="AAT77596.1"
/translation="MIRLGRGTAGALLCALLGTLSAAGFRQIRYSVPEELDKGSYVGN
ISKDLGLEPHELAERGVRIISRGRSQLFSLDPRSGSLVTAGRIDREELCAQSAPCVVS
FNILVEDKLKIFEVEVDISDINDNAPSFPTEELEIKIGELTVPGTRFPLKTAFDPDVG
MNSLQNYKLNSNDYFSLAVNSVIDDAKYPELVLERALDREKKAVHQLDLIASDGGDPA
HTGKLCIQVIVLDANDNPPVFTKPEYRVSVLENVPVGTRLTTVNATDPDEGFNAQVSY
ILDKMPGKIAQIFHLNSVTGDVSILKSLDYEDAVFYEIKIEAQDGPGLFSRAKILVTV
LDVNDNAPEISVTSLTSSVPEEAPAGREIALINVHDRDSGQNGQVSVFVLGNLPFTLE
KSIDQYYRLVTARSLDHEKESQYNISLRATDGGSPPLSTETHITLHVTDINDNPPTFT
RASYLAYIPENNARGASIFSVTAQDPDTDKNAQITYSLAEDTLQGVPLSSFVSINSNT
GVLYALCSFDYEQFRDLQLHITARDSGNPPLSSNSTLSLFVLDKNDNSPEILYPALPV
DGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNSWLSYRLIKASEPGLFSVGLHTGEVR
TARALLDRDALKQSLVVAVQDHGQPPLSATVTLTIAVADSIPDILGDLESIHTPANPK
NSDLTLYLVVAVAAVSCIFLAFVIVLLALRLRRWHSSRLLQASGNGLAGIPASHFVGV
DGVQAFLQTYSQEVSLTAGSRKSHLIFPQPNYADTLISQESCGKSEPLIIPQDLLETQ
EDPELPEQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASASEA
ADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA
GGNGNKKKSGKKEKK"
BASE COUNT 1147 a 1315 c 1181 g 1069 t
ORIGIN
1 ctctgctgca aagcaacacc aagaacaatc tgagaagaca gaagcgacct caccacatca
61 tcgggcaact ctgtggtgtg tgaattaaat ccatgaaaga tttaactact tgaaggggta
121 aggctgggac ccatcgtggg aatcagagga aaaataaaac agaaaaggaa atgatccgac
181 tgggacgagg aaccgccgga gctttgttgt gcgcgctcct ggggacactg agcgcggctg
241 gcttcaggca gatccgctac tccgtgccgg aggagctgga caaaggctcc tacgtgggca
301 acatctccaa ggacctgggg ctggagcccc acgagctggc ggagcgcggg gtccgcatca
361 tctccagagg taggtcgcag cttttctctc tggacccgcg aagcggcagc ttggttaccg
421 cgggcaggat agaccgggag gagctgtgcg cccagagcgc gccctgtgtc gtgagcttta
481 acatccttgt agaggataag ctgaaaatat ttgaggtaga agttgacatc agcgatatta
541 atgataatgc tcctagtttt ccaacggagg aattggaaat aaaaattggg gaactaacag
601 ttcctggaac ccgatttcca cttaaaactg cgtttgaccc ggatgtgggc atgaactccc
661 tgcagaacta taagctcaac tccaatgact acttctcctt ggctgtgaac agcgtcatcg
721 atgacgccaa gtacccagag ctggtgctgg agcgagccct ggatcgtgag aaaaaggcag
781 tccatcagct tgatctcatt gcctctgatg gcggagaccc tgcccacacc ggcaagttgt
841 gcatccaagt gatagtcttg gatgcaaatg acaacccgcc cgtgtttact aagccagagt
901 accgtgtcag tgttctggaa aatgtgccag tgggcacgcg gctgaccaca gtgaatgcca
961 ctgatcctga cgagggattc aatgctcaag tgtcctacat tctagataaa atgcctggga
1021 aaattgctca gattttccat ctcaattcag tgactggaga tgtatcaata ttaaaaagtc
1081 ttgattatga ggacgctgta ttctatgaaa tcaaaattga agcacaagac ggaccaggtc
1141 ttttttcaag agccaagatt cttgtcacgg ttctggatgt gaatgacaac gccccagaaa
1201 tctcagtcac ttccctcaca agctcggtcc cagaggaggc tcctgctgga agagaaatcg
1261 ctcttatcaa tgtacatgac cgagattctg gccagaacgg gcaagtctca gtttttgtcc
1321 tgggaaatct gccctttact ctagaaaaat caatcgacca atactaccgc ttagtgacag
1381 ccagatctct ggatcatgag aaggagtctc aatataatat cagtctgaga gccactgatg
1441 ggggaagccc accactatcc acagaaactc atatcactct gcatgtgaca gacatcaatg
1501 acaaccctcc taccttcaca cgtgcctcct atttagccta tatcccagaa aacaatgcta
1561 ggggagcatc catcttctct gttacagcac aggacccgga cactgacaag aatgcacaaa
1621 tcacttactc actggctgag gacacacttc agggggtgcc actgtcatcc ttcgtctcca
1681 tcaactctaa tactggtgtc ctgtatgccc tttgctcctt tgactacgag cagtttagag
1741 acctgcagtt acacataaca gccagggaca gtgggaaccc tccactcagc agcaactcga
1801 ccctgagtct atttgtgctg gacaagaatg acaactcacc tgaaatcctg taccctgccc
1861 tcccagtaga tggctccact ggggttgagt tagcaccccg ctctgcagaa cctggatacc
1921 tggtaaccaa ggtggtggca gttgacaaag attcaggaca aaactcttgg ctgtcctacc
1981 gcctgatcaa ggccagcgag ccagggctct tctcggtggg gctgcacaca ggcgaggtac
2041 gcacggctcg ggccctcctg gaccgagatg ctctcaaaca gagcctggtg gtggctgtgc
2101 aggaccatgg ccagccccct ctttccgcca cagtcacact caccatagca gtggctgaca
2161 gcattcctga catcctgggg gacttggaaa gcatccatac ccctgctaac cccaaaaatt
2221 cagacctcac cctctacctg gtggtggcag tggctgcggt ctcctgcatc ttcctggcct
2281 ttgtcattgt gctgctggcc cttaggctac ggcgttggca ctcatcgcgc ctgctacagg
2341 cttcaggaaa tgggttagcc ggcataccag cctctcactt tgtgggtgta gatggggtgc
2401 aagcgttcct gcagacctat tcccaggaag tttcgcttac tgcaggctct aggaagagtc
2461 acctgatctt cccgcagccc aactatgcag acacgctcat cagccaggag agctgtggga
2521 aaagcgagcc tcttataata cctcaagatt tacttgaaac gcaagaagac cccgagctgc
2581 ctgagcaagc cccgcccaac actgactggc gtttctctca agcccagaga cccggcacga
2641 gcggatccca aaatggggat gaaaccggca cctggcccaa caaccagttc gatacagaga
2701 tgctgcaagc catgatcttg gcctctgcca gtgaagccgc tgatgggagc tccactctgg
2761 gagggggcac tggcactatg ggtttgagcg ctcgatatgg accccagttt accctgcagc
2821 acgtgcctga ctaccgccag aacgtgtaca tccctggcag caatgccaca ctgaccaacg
2881 cagctggcaa acgagatggc aaggctccgg caggcggcaa tggcaacaag aagaagtcgg
2941 gcaagaaaga gaagaagtaa tatggaggcc aggccttgag ccacagggca gcctccctcc
3001 ccagccagtc cagcttgtcc ttacttgtac ccaggcctca gaatttcagg gctcacccca
3061 ggattctggt aggagccaca gccaggccat gctccccgtt gggaaacaga aacaagtgcc
3121 caagccaaca ccccctcttt gtaccctagg ggggttgaat atgcaaagag agttctgctg
3181 ggacccccta tccaatcagt gattgtaccc acataggtag cagggttagt gtggatacac
3241 acacacacac acacacacac acacacacac acacaaacac catgccacac tcccctagtt
3301 acagctgaac tccccatctt ccaacccagt caggctcatt catctccagc ctccctctcc
3361 ccaccccacc ctttcagtca acaccctctc tttgagccag gtagttgggc tgttggggtg
3421 acaggtgagc taagggggct cctagttctg aacaggtggg agagtattac aatcctttgg
3481 cctctccttc agttcagctg tcccccaaag catggtttgg taccagtctt ctcatttcct
3541 cctagagcct gagaccaatg cttaagtttt ggggaacagt caccatgccc ctggtactga
3601 tgatgcttgc tggatttttg ggaaggcatt ttgctactaa gcctcttttc aatgcctggg
3661 gactaccagt cttctgttct ccattgtttg atgttcccac tgcatgctgt gacttcctac
3721 tcctcaaaga agagactcct ttgcatgtct ggagacagta gggggtggta aactaaaggg
3781 aagctgagtg tatactgctg ggagtggggg cagtggacaa aacagcctgt taatagggtc
3841 ttgcaagggg ctctgtacgt acccagggta ctggctcaat cctcaaattc tagccataga
3901 caaacatcag gccagacccc tccctcctgg ttcagcctgg gcagcttggg ctgagccacc
3961 aggaccaatg gatttaagct gacatttcag tccaagaaga cttctaagtg agtttaagac
4021 cagagaggaa agaggggcct ctgtgggtgc tgggtactcc agaggtgccc ttggtgggag
4081 ggtcagtggt cctagcagga agggagccca gcaaggtcat tcttggaccc tgggtctagt
4141 ccggtagcta gaacaaggga ccaagtggct ataaagtctc agccaatgat gaggcttttc
4201 ccctgggcct ctgggcccct gtattcctca agcccctggc ctccacctta ccaggtgcca
4261 tttctcagaa ggccactgcc caggccccca ggccgccccc tcgtggccac agaccggtta
4321 aagcccccca gtgcctcctt gtgcatagaa cttcctctgc ccgagccctt acagtagtgt
4381 agaagccccc ttcctcctcc cgctggtgta gaatagccaa tagtatagtg tggtgtgctt
4441 ttacgtgatg gcgagtgggc agcgggcggt gggctgtgcg cagccgtctg tcctttgaat
4501 ctcaatctgc ctgcgcggcc agtgctgtgt tttgtgctgt gtccacacgc tgcggcgacc
4561 cctccctgta ctgacttctc tataaaagct tctcttcgca tagtcacgta gctcctgccc
4621 atcccccttc cgatatctct cgcaagtttt atactctaat atttatatgg cttttttctt
4681 cgaaaattaa aaataaaaaa tggtttcttc tg
//