LOCUS AY574013 1022 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma a2 (Pcdhga2) mRNA, complete
cds, alternatively spliced.
ACCESSION AY574013
VERSION AY574013.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 1022)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 1022)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 1022)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 1022)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..1022
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..1022
/gene="Pcdhga2"
CDS 171..398
/gene="Pcdhga2"
/note="constant region not in frame; alternatively spliced
within the variable exon"
/codon_start=1
/product="protocadherin gamma a2"
/protein_id="AAT77595.1"
/translation="MATLQKLPQSRMLVLLCALWAALWEARAGQIRYSVPEEIDKGSF
VGSIAKDLGLEPRALEERGVRIVSRASPAQH"
BASE COUNT 248 a 302 c 294 g 178 t
ORIGIN
1 cggtcagaga agacgcaaag aaattcaacc cagaagcctg agagttctct ctcttgggtg
61 acctgggttc ggtgactgtg gtcgtctcag accctggagg atacggactg gactcccctc
121 ccgccctgtg ctggaagctg gttcagagga aactcggctg cagaaaggca atggcgacgc
181 tgcagaaact cccccagagc agaatgctgg tcctcctgtg cgcactttgg gccgccctgt
241 gggaggccag agctggacag atccgctact ccgtgccaga ggagatcgac aaaggctcct
301 tcgtaggcag catcgccaag gacctgggac tagagccccg ggctctggaa gaacgagggg
361 tccgtatcgt ctccagagca agccccgccc aacactgact ggcgtttctc tcaagcccag
421 agacccggca cgagcggatc ccaaaatggg gatgaaaccg gcacctggcc caacaaccag
481 ttcgatacag agatgctgca agccatgatc ttggcctctg ccagtgaagc cgctgatggg
541 agctccactc tgggaggggg cactggcact atgggtttga gcgctcgata tggaccccag
601 tttaccctgc agcacgtgcc tgactaccga cagaacgtgt acatccctgg cagcaatgcc
661 acactgacca acgcagctgg caaacgagat ggcaaggctc cggcaggcgg caatggcaac
721 aagaagaagt cgggcaagaa agagaagaag taatatggag gccaggcctt gagccacagg
781 gcagcctccc tccccagcca gtccagcttg tccttacttg tacccaggcc tcagaatttc
841 agggctcacc ccaggattct ggtaggagcc acagccaggc catgctcccc gttgggaaac
901 agaaacaagt gcccaagcca acaccccctc tttgtaccct aggggggttg aatatgcaaa
961 gagagttctg ctgggacccc ctatccaatc agtgattgta cccacatagg tagcagggtt
1021 ag
//