LOCUS AY574012 4718 bp mRNA linear ROD 05-JUN-2007 DEFINITION Rattus norvegicus protocadherin gamma a2 (Pcdhga2) mRNA, complete cds, alternatively spliced. ACCESSION AY574012 VERSION AY574012.1 KEYWORDS . SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 4718) AUTHORS Zhang,T., Haws,P. and Wu,Q. TITLE Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation JOURNAL Genome Res. 14 (1), 79-89 (2004) PUBMED 14672974 REFERENCE 2 (bases 1 to 4718) AUTHORS Wu,Q. TITLE Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes JOURNAL Genetics 169 (4), 2179-2188 (2005) PUBMED 15744052 REFERENCE 3 (bases 1 to 4718) AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q. TITLE Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires JOURNAL Neuroscience 144 (2), 579-603 (2007) PUBMED 17110050 REFERENCE 4 (bases 1 to 4718) AUTHORS Wu,Q. TITLE Direct Submission JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT 84112, USA FEATURES Location/Qualifiers source 1..4718 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" gene 1..4718 /gene="Pcdhga2" CDS 171..2966 /gene="Pcdhga2" /note="PCDHGA2; a member of the protocadherin gamma cluster; alternatively spliced" /codon_start=1 /product="protocadherin gamma a2" /protein_id="AAT77594.1" /translation="MATLQKLPQSRMLVLLCALWAALWEARAGQIRYSVPEEIDKGSF VGSIAKDLGLEPRALEERGVRIVSRGKSQLFALNPRSGSLVTAGRIDREELCAQSTPC LVNFNLLMEDKLTIYSVEVEVIDVNDNAPRFGVEEPELKISETTTPGFRIPLKSAHDA DVGENTLQKYKLNSNDHFSLDVRTGADGNKYPELVLERALDREEEAVHHLVLVASDRG KPVRSSTCRIRVKVLDVNDNAPVFTQPEYRVSVPENMPVGTRILTVTATDTDEGYNAQ VTYFLERVPGESTDAFELKSTSGDITITKSLDYEKAKFHEIDIEAQDGPGLLTRTKVI VTVLDVNDNAPEFYMTSATASVPEDAPLGTVIALFNVHDRDSGQNAVVTCSLPEMLPF KLERSVDNYYRLVTTRALDREQFSFYNITLRAKDQGSPSLSTDAHLLLQVADINDNPP SFSRGAYSAYIPENNPRGTSIFSVLAYDPDSNDNAHVTYSLAEDTFQGAPLSSYISIN SDTGVLYALRSFDYEQFQDLQLWVIAVDSGKPPLSSNVSLSLFLVDQNDNMPEILYPA LPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFSVGLHTG EVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTIAIADNIPEVLADLVSIRTPA NSDDSELTLYLVVAVAVVSCVFLAFVIALLALRLRRWHMSRMPQASGDGFGGIPASHF VGVDGVRAFLQTYSHEVSLTADSGKSHIIFPQPNYADTLISQESCEKNDFLSAPQSLL DDKREETPQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASAS EAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA PAGGNGNKKKSGKKEKK" BASE COUNT 1124 a 1311 c 1194 g 1089 t ORIGIN 1 cggtcagaga agacgcaaag aaattcaacc cagaagcctg agagttctct ctcttgggtg 61 acctgggttc ggtgactgtg gtcgtctcag accctggagg atacggactg gactcccctc 121 ccgccctgtg ctggaagctg gttcagagga aactcggctg cagaaaggca atggcgacgc 181 tgcagaaact cccccagagc agaatgctgg tcctcctgtg cgcactttgg gccgccctgt 241 gggaggccag agctggacag atccgctact ccgtgccaga ggagatcgac aaaggctcct 301 tcgtaggcag catcgccaag gacctgggac tagagccccg ggctctggaa gaacgagggg 361 tccgtatcgt ctccagaggt aagtcgcagc tctttgcttt gaacccacga agcggcagct 421 tggtcaccgc aggcaggata gaccgggagg agctgtgcgc ccagagcaca ccctgtttgg 481 tgaactttaa cctattaatg gaagataaat tgactattta ttctgtagag gtggaggtaa 541 tagatgttaa tgacaatgct cctcgctttg gagtagagga gccagaacta aaaatcagtg 601 aaacaactac accaggattc aggattcctc ttaagagtgc acatgatgcg gacgtgggag 661 agaacaccct ccagaagtat aaactcaact caaatgacca cttctctctg gacgtgcgaa 721 ctggagctga tgggaacaag tacccagagc tggtgcttga gcgtgccttg gaccgagagg 781 aagaagctgt tcatcatctg gttctagtcg cctctgacag gggcaagcca gtgcgatcta 841 gcacctgccg catccgtgtg aaggtcttgg atgtgaacga caacgctcct gtttttaccc 901 agcccgagta tcgtgtgagc gttcctgaga atatgcccgt aggaacccgg atactcacgg 961 tgacagccac tgacactgat gagggataca atgctcaagt gacttatttt ctggagcgtg 1021 tccctggaga aagtacagat gcatttgagc taaagtcaac atctggagat ataacaatca 1081 caaaaagtct ggattatgag aaagctaaat tccatgaaat cgatattgag gctcaggacg 1141 gcccaggcct tctgactagg actaaagtta ttgtcaccgt tctagatgtc aatgacaatg 1201 ccccagaatt ttacatgaca tctgccactg cttctgtgcc tgaagatgct cctctgggaa 1261 ccgtaattgc actcttcaat gtgcatgaca gggactctgg gcagaatgct gttgtcacat 1321 gttcacttcc tgagatgctc cctttcaagt tagaaaggtc agtggacaat tactaccgac 1381 tggttacaac cagagccctt gacagggaac agttctcctt ctacaacatc actctaagag 1441 ccaaagacca aggaagcccg tctctgtcca cagatgcaca ccttttactg caggtggcag 1501 atatcaatga caacccaccc tccttctccc ggggggccta ctctgcctac attcctgaaa 1561 acaaccccag aggcacctct atcttttcgg tgttggccta tgaccctgac agtaatgaca 1621 atgcccatgt aacctactct ttagctgaag atacctttca aggagcaccc ctgtcctcct 1681 acatctccat caactctgac actggagtcc tctatgctct ccgctccttt gactatgagc 1741 agttccaaga cttgcagctg tgggtgatag cagtggacag tgggaagcct ccactgagta 1801 gcaatgtgtc attgagcctg ttcttagtgg accagaatga caacatgcct gagatcctat 1861 atcctgccct ccccacagac ggatccactg gtgtggaact agcacctcga tcggcagagc 1921 ctggatacct ggtgaccaag gtggtggcag tggacaaaga ctcaggtcag aatgcctggc 1981 tgtcctaccg tctgctcaag gccagtgagc cagggctctt ctcagtgggg ctgcacacgg 2041 gcgaagtacg cacagctcgg gccctgttgg acagagatgc tctgaaacag agcctggtgg 2101 tggctgtgca ggatcacggc caacctcctc tctctgccac ggtcacactc accatagcaa 2161 tagctgacaa catccctgaa gtcctggctg acctggtcag catcaggacc cctgccaact 2221 ctgatgattc agaactcact ctctacctgg tggtggcagt ggctgtggtc tcctgtgtct 2281 tcttggcctt tgtcattgca ctgctggcac tcaggctgag gcgctggcat atgtctcgaa 2341 tgcctcaggc ttcaggagat ggctttgggg gaatccctgc ctcacacttt gtgggagtgg 2401 atggagtccg tgccttcctg cagacctatt cccatgaagt ctcactcact gcagactcgg 2461 ggaaaagcca cattatcttc cctcaaccaa actatgcaga tactctcatc agccaggaga 2521 gctgtgaaaa aaatgatttt ctttcagcac cgcagtcttt acttgatgat aaaagagaag 2581 aaaccccgca gcaagccccg cccaacactg actggcgttt ctctcaagcc cagagacccg 2641 gcacgagcgg atcccaaaat ggggatgaaa ccggcacctg gcccaacaac cagttcgata 2701 cagagatgct gcaagccatg atcttggcct ctgccagtga agccgctgat gggagctcca 2761 ctctgggagg gggcactggc actatgggtt tgagcgctcg atatggaccc cagtttaccc 2821 tgcagcacgt gcctgactac cgccagaacg tgtacatccc tggcagcaat gccacactga 2881 ccaacgcagc tggcaaacga gatggcaagg ctccggcagg cggcaatggc aacaagaaga 2941 agtcgggcaa gaaagagaag aagtaatatg gaggccaggc cttgagccac agggcagcct 3001 ccctccccag ccagtccagc ttgtccttac ttgtacccag gcctcagaat ttcagggctc 3061 accccaggat tctggtagga gccacagcca ggccatgctc cccgttggga aacagaaaca 3121 agtgcccaag ccaacacccc ctctttgtac cctagggggg ttgaatatgc aaagagagtt 3181 ctgctgggac cccctatcca atcagtgatt gtacccacat aggtagcagg gttagtgtgg 3241 atacacacac acacacacac acacacacac acacacacac aaacaccatg ccacactccc 3301 ctagttacag ctgaactccc catcttccaa cccagtcagg ctcattcatc tccagcctcc 3361 ctctccccac cccacccttt cagtcaacac cctctctttg agccaggtag ttgggctgtt 3421 ggggtgacag gtgagctaag ggggctccta gttctgaaca ggtgggagag tattacaatc 3481 ctttggcctc tccttcagtt cagctgtccc ccaaagcatg gtttggtacc agtcttctca 3541 tttcctccta gagcctgaga ccaatgctta agttttgggg aacagtcacc atgcccctgg 3601 tactgatgat gcttgctgga tttttgggaa ggcattttgc tactaagcct cttttcaatg 3661 cctggggact accagtcttc tgttctccat tgtttgatgt tcccactgca tgctgtgact 3721 tcctactcct caaagaagag actcctttgc atgtctggag acagtagggg gtggtaaact 3781 aaagggaagc tgagtgtata ctgctgggag tgggggcagt ggacaaaaca gcctgttaat 3841 agggtcttgc aaggggctct gtacgtaccc agggtactgg ctcaatcctc aaattctagc 3901 catagacaaa catcaggcca gacccctccc tcctggttca gcctgggcag cttgggctga 3961 gccaccagga ccaatggatt taagctgaca tttcagtcca agaagacttc taagtgagtt 4021 taagaccaga gaggaaagag gggcctctgt gggtgctggg tactccagag gtgcccttgg 4081 tgggagggtc agtggtccta gcaggaaggg agcccagcaa ggtcattctt ggaccctggg 4141 tctagtccgg tagctagaac aagggaccaa gtggctataa agtctcagcc aatgatgagg 4201 cttttcccct gggcctctgg gcccctgtat tcctcaagcc cctggcctcc accttaccag 4261 gtgccatttc tcagaaggcc actgcccagg cccccaggcc gccccctcgt ggccacagac 4321 cggttaaagc cccccagtgc ctccttgtgc atagaacttc ctctgcccga gcccttacag 4381 tagtgtagaa gcccccttcc tcctcccgct ggtgtagaat agccaatagt atagtgtggt 4441 gtgcttttac gtgatggcga gtgggcagcg ggcggtgggc tgtgcgcagc cgtctgtcct 4501 ttgaatctca atctgcctgc gcggccagtg ctgtgttttg tgctgtgtcc acacgctgcg 4561 gcgacccctc cctgtactga cttctctata aaagcttctc ttcgcatagt cacgtagctc 4621 ctgcccatcc cccttccgat atctctcgca agttttatac tctaatattt atatggcttt 4681 tttcttcgaa aattaaaaat aaaaaatggt ttcttctg //