LOCUS       AY574012                4718 bp    mRNA    linear   ROD 05-JUN-2007
DEFINITION  Rattus norvegicus protocadherin gamma a2 (Pcdhga2) mRNA, complete
            cds, alternatively spliced.
ACCESSION   AY574012
VERSION     AY574012.1
KEYWORDS    .
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4718)
  AUTHORS   Zhang,T., Haws,P. and Wu,Q.
  TITLE     Multiple variable first exons: a mechanism for cell- and
            tissue-specific gene regulation
  JOURNAL   Genome Res. 14 (1), 79-89 (2004)
   PUBMED   14672974
REFERENCE   2  (bases 1 to 4718)
  AUTHORS   Wu,Q.
  TITLE     Comparative genomics and diversifying selection of the clustered
            vertebrate protocadherin genes
  JOURNAL   Genetics 169 (4), 2179-2188 (2005)
   PUBMED   15744052
REFERENCE   3  (bases 1 to 4718)
  AUTHORS   Zou,C., Huang,W., Ying,G. and Wu,Q.
  TITLE     Sequence analysis and expression mapping of the rat clustered
            protocadherin gene repertoires
  JOURNAL   Neuroscience 144 (2), 579-603 (2007)
   PUBMED   17110050
REFERENCE   4  (bases 1 to 4718)
  AUTHORS   Wu,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAR-2004) Department of Human Genetics, Eccles
            Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
            84112, USA
FEATURES             Location/Qualifiers
     source          1..4718
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
     gene            1..4718
                     /gene="Pcdhga2"
     CDS             171..2966
                     /gene="Pcdhga2"
                     /note="PCDHGA2; a member of the protocadherin gamma
                     cluster; alternatively spliced"
                     /codon_start=1
                     /product="protocadherin gamma a2"
                     /protein_id="AAT77594.1"
                     /translation="MATLQKLPQSRMLVLLCALWAALWEARAGQIRYSVPEEIDKGSF
                     VGSIAKDLGLEPRALEERGVRIVSRGKSQLFALNPRSGSLVTAGRIDREELCAQSTPC
                     LVNFNLLMEDKLTIYSVEVEVIDVNDNAPRFGVEEPELKISETTTPGFRIPLKSAHDA
                     DVGENTLQKYKLNSNDHFSLDVRTGADGNKYPELVLERALDREEEAVHHLVLVASDRG
                     KPVRSSTCRIRVKVLDVNDNAPVFTQPEYRVSVPENMPVGTRILTVTATDTDEGYNAQ
                     VTYFLERVPGESTDAFELKSTSGDITITKSLDYEKAKFHEIDIEAQDGPGLLTRTKVI
                     VTVLDVNDNAPEFYMTSATASVPEDAPLGTVIALFNVHDRDSGQNAVVTCSLPEMLPF
                     KLERSVDNYYRLVTTRALDREQFSFYNITLRAKDQGSPSLSTDAHLLLQVADINDNPP
                     SFSRGAYSAYIPENNPRGTSIFSVLAYDPDSNDNAHVTYSLAEDTFQGAPLSSYISIN
                     SDTGVLYALRSFDYEQFQDLQLWVIAVDSGKPPLSSNVSLSLFLVDQNDNMPEILYPA
                     LPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFSVGLHTG
                     EVRTARALLDRDALKQSLVVAVQDHGQPPLSATVTLTIAIADNIPEVLADLVSIRTPA
                     NSDDSELTLYLVVAVAVVSCVFLAFVIALLALRLRRWHMSRMPQASGDGFGGIPASHF
                     VGVDGVRAFLQTYSHEVSLTADSGKSHIIFPQPNYADTLISQESCEKNDFLSAPQSLL
                     DDKREETPQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASAS
                     EAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKA
                     PAGGNGNKKKSGKKEKK"
BASE COUNT         1124 a         1311 c         1194 g         1089 t
ORIGIN      
        1 cggtcagaga agacgcaaag aaattcaacc cagaagcctg agagttctct ctcttgggtg
       61 acctgggttc ggtgactgtg gtcgtctcag accctggagg atacggactg gactcccctc
      121 ccgccctgtg ctggaagctg gttcagagga aactcggctg cagaaaggca atggcgacgc
      181 tgcagaaact cccccagagc agaatgctgg tcctcctgtg cgcactttgg gccgccctgt
      241 gggaggccag agctggacag atccgctact ccgtgccaga ggagatcgac aaaggctcct
      301 tcgtaggcag catcgccaag gacctgggac tagagccccg ggctctggaa gaacgagggg
      361 tccgtatcgt ctccagaggt aagtcgcagc tctttgcttt gaacccacga agcggcagct
      421 tggtcaccgc aggcaggata gaccgggagg agctgtgcgc ccagagcaca ccctgtttgg
      481 tgaactttaa cctattaatg gaagataaat tgactattta ttctgtagag gtggaggtaa
      541 tagatgttaa tgacaatgct cctcgctttg gagtagagga gccagaacta aaaatcagtg
      601 aaacaactac accaggattc aggattcctc ttaagagtgc acatgatgcg gacgtgggag
      661 agaacaccct ccagaagtat aaactcaact caaatgacca cttctctctg gacgtgcgaa
      721 ctggagctga tgggaacaag tacccagagc tggtgcttga gcgtgccttg gaccgagagg
      781 aagaagctgt tcatcatctg gttctagtcg cctctgacag gggcaagcca gtgcgatcta
      841 gcacctgccg catccgtgtg aaggtcttgg atgtgaacga caacgctcct gtttttaccc
      901 agcccgagta tcgtgtgagc gttcctgaga atatgcccgt aggaacccgg atactcacgg
      961 tgacagccac tgacactgat gagggataca atgctcaagt gacttatttt ctggagcgtg
     1021 tccctggaga aagtacagat gcatttgagc taaagtcaac atctggagat ataacaatca
     1081 caaaaagtct ggattatgag aaagctaaat tccatgaaat cgatattgag gctcaggacg
     1141 gcccaggcct tctgactagg actaaagtta ttgtcaccgt tctagatgtc aatgacaatg
     1201 ccccagaatt ttacatgaca tctgccactg cttctgtgcc tgaagatgct cctctgggaa
     1261 ccgtaattgc actcttcaat gtgcatgaca gggactctgg gcagaatgct gttgtcacat
     1321 gttcacttcc tgagatgctc cctttcaagt tagaaaggtc agtggacaat tactaccgac
     1381 tggttacaac cagagccctt gacagggaac agttctcctt ctacaacatc actctaagag
     1441 ccaaagacca aggaagcccg tctctgtcca cagatgcaca ccttttactg caggtggcag
     1501 atatcaatga caacccaccc tccttctccc ggggggccta ctctgcctac attcctgaaa
     1561 acaaccccag aggcacctct atcttttcgg tgttggccta tgaccctgac agtaatgaca
     1621 atgcccatgt aacctactct ttagctgaag atacctttca aggagcaccc ctgtcctcct
     1681 acatctccat caactctgac actggagtcc tctatgctct ccgctccttt gactatgagc
     1741 agttccaaga cttgcagctg tgggtgatag cagtggacag tgggaagcct ccactgagta
     1801 gcaatgtgtc attgagcctg ttcttagtgg accagaatga caacatgcct gagatcctat
     1861 atcctgccct ccccacagac ggatccactg gtgtggaact agcacctcga tcggcagagc
     1921 ctggatacct ggtgaccaag gtggtggcag tggacaaaga ctcaggtcag aatgcctggc
     1981 tgtcctaccg tctgctcaag gccagtgagc cagggctctt ctcagtgggg ctgcacacgg
     2041 gcgaagtacg cacagctcgg gccctgttgg acagagatgc tctgaaacag agcctggtgg
     2101 tggctgtgca ggatcacggc caacctcctc tctctgccac ggtcacactc accatagcaa
     2161 tagctgacaa catccctgaa gtcctggctg acctggtcag catcaggacc cctgccaact
     2221 ctgatgattc agaactcact ctctacctgg tggtggcagt ggctgtggtc tcctgtgtct
     2281 tcttggcctt tgtcattgca ctgctggcac tcaggctgag gcgctggcat atgtctcgaa
     2341 tgcctcaggc ttcaggagat ggctttgggg gaatccctgc ctcacacttt gtgggagtgg
     2401 atggagtccg tgccttcctg cagacctatt cccatgaagt ctcactcact gcagactcgg
     2461 ggaaaagcca cattatcttc cctcaaccaa actatgcaga tactctcatc agccaggaga
     2521 gctgtgaaaa aaatgatttt ctttcagcac cgcagtcttt acttgatgat aaaagagaag
     2581 aaaccccgca gcaagccccg cccaacactg actggcgttt ctctcaagcc cagagacccg
     2641 gcacgagcgg atcccaaaat ggggatgaaa ccggcacctg gcccaacaac cagttcgata
     2701 cagagatgct gcaagccatg atcttggcct ctgccagtga agccgctgat gggagctcca
     2761 ctctgggagg gggcactggc actatgggtt tgagcgctcg atatggaccc cagtttaccc
     2821 tgcagcacgt gcctgactac cgccagaacg tgtacatccc tggcagcaat gccacactga
     2881 ccaacgcagc tggcaaacga gatggcaagg ctccggcagg cggcaatggc aacaagaaga
     2941 agtcgggcaa gaaagagaag aagtaatatg gaggccaggc cttgagccac agggcagcct
     3001 ccctccccag ccagtccagc ttgtccttac ttgtacccag gcctcagaat ttcagggctc
     3061 accccaggat tctggtagga gccacagcca ggccatgctc cccgttggga aacagaaaca
     3121 agtgcccaag ccaacacccc ctctttgtac cctagggggg ttgaatatgc aaagagagtt
     3181 ctgctgggac cccctatcca atcagtgatt gtacccacat aggtagcagg gttagtgtgg
     3241 atacacacac acacacacac acacacacac acacacacac aaacaccatg ccacactccc
     3301 ctagttacag ctgaactccc catcttccaa cccagtcagg ctcattcatc tccagcctcc
     3361 ctctccccac cccacccttt cagtcaacac cctctctttg agccaggtag ttgggctgtt
     3421 ggggtgacag gtgagctaag ggggctccta gttctgaaca ggtgggagag tattacaatc
     3481 ctttggcctc tccttcagtt cagctgtccc ccaaagcatg gtttggtacc agtcttctca
     3541 tttcctccta gagcctgaga ccaatgctta agttttgggg aacagtcacc atgcccctgg
     3601 tactgatgat gcttgctgga tttttgggaa ggcattttgc tactaagcct cttttcaatg
     3661 cctggggact accagtcttc tgttctccat tgtttgatgt tcccactgca tgctgtgact
     3721 tcctactcct caaagaagag actcctttgc atgtctggag acagtagggg gtggtaaact
     3781 aaagggaagc tgagtgtata ctgctgggag tgggggcagt ggacaaaaca gcctgttaat
     3841 agggtcttgc aaggggctct gtacgtaccc agggtactgg ctcaatcctc aaattctagc
     3901 catagacaaa catcaggcca gacccctccc tcctggttca gcctgggcag cttgggctga
     3961 gccaccagga ccaatggatt taagctgaca tttcagtcca agaagacttc taagtgagtt
     4021 taagaccaga gaggaaagag gggcctctgt gggtgctggg tactccagag gtgcccttgg
     4081 tgggagggtc agtggtccta gcaggaaggg agcccagcaa ggtcattctt ggaccctggg
     4141 tctagtccgg tagctagaac aagggaccaa gtggctataa agtctcagcc aatgatgagg
     4201 cttttcccct gggcctctgg gcccctgtat tcctcaagcc cctggcctcc accttaccag
     4261 gtgccatttc tcagaaggcc actgcccagg cccccaggcc gccccctcgt ggccacagac
     4321 cggttaaagc cccccagtgc ctccttgtgc atagaacttc ctctgcccga gcccttacag
     4381 tagtgtagaa gcccccttcc tcctcccgct ggtgtagaat agccaatagt atagtgtggt
     4441 gtgcttttac gtgatggcga gtgggcagcg ggcggtgggc tgtgcgcagc cgtctgtcct
     4501 ttgaatctca atctgcctgc gcggccagtg ctgtgttttg tgctgtgtcc acacgctgcg
     4561 gcgacccctc cctgtactga cttctctata aaagcttctc ttcgcatagt cacgtagctc
     4621 ctgcccatcc cccttccgat atctctcgca agttttatac tctaatattt atatggcttt
     4681 tttcttcgaa aattaaaaat aaaaaatggt ttcttctg
//