LOCUS AY574011 4738 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma a12 (Pcdhga12) mRNA, complete
cds.
ACCESSION AY574011
VERSION AY574011.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4738)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 4738)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 4738)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 4738)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..4738
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..4738
/gene="Pcdhga12"
CDS 188..2986
/gene="Pcdhga12"
/note="PCDHGA12; a member of the protocadherin gamma
cluster"
/codon_start=1
/product="protocadherin gamma a12"
/protein_id="AAT77593.1"
/translation="MIPMQRPEDCKGLVFLGVFFGMLWEAGSTQIRYSVPEELEKGSR
VGNISKDLGLEPRELAERGVRIVSRGRAQLFALNPRSGSLVTAGKIDREELCMGSIKC
QLNLEILMEDIGKIYGVEIEVRDINDNAPYFRESELEIKMSENAAAGMRFPLPHAWDP
DIGKNSLQSYQLSPNAHFSLEVQKGADGNKYPELVLESSLDREEKAAHLLVLTASDAG
DPVRSGTARILVTVLDANDNAPAFARSEYRVNVRENVAVGTQLLLVNATDRDEGSNAE
VIYSFRYVDDKAAKVFKLDSNLGTISTIGELNHEESGFYEMEVQATDNAGFSARAKVL
VTVLDVNDNAPEVAITSLNSPVPENSPRGTLIALLNVNDQDSGENGQVICSIQENLPF
KLEKSYGNYYSLLTDAVLDREQVPSYNITVTATDRGSPPLTTETHLSLNVADANDNPP
IFLQASYWAYIQENNPRGASIASVTAHDPDSDKNAQVTYSLAEDTHQGVPLSSYVSIN
SDTGVLYALHSFDYEQFPDLQLQVIARDSGEPPLSSNVSLSLFVLDQNDNTPEILYPT
LPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTG
EVSTARALMDRDALKQNLVVSVQDHGQPPLSATVTLTVAIADSIPDVLADLDNLESPT
TSETSGLTLYLVVAVAAVSMVFLVFVLVLLALRLRRWHSLRLLRAAGPGLADVAASRF
VGVDGVQAFLQTYSHEVSLTAGSRKSHLIFPQPNYADTLISQESCEKTEPLLPSSDLV
FSKDNHALNQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASA
SEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK
APAGGNGNKKKSGKKEKK"
BASE COUNT 1117 a 1341 c 1240 g 1040 t
ORIGIN
1 gaaaaggcag cgaagcccag cccgcgttgc acgagcctaa agcacaatgc ggatagattg
61 agacaaaaca cctctaggag caaactggcc tggagtccca cctcctaact gtcgtgctcc
121 gagccttcaa aagcggattc tggtttcagt ggtcagaggc agaattggaa atcatcctca
181 actgacaatg atccccatgc aaaggccgga ggactgcaaa gggctggtat tcctgggagt
241 cttcttcggg atgctgtggg aagccggatc cacccagata cgctattccg ttccggagga
301 gctggagaaa ggatctaggg tgggcaacat ctccaaggat ctggggctgg agccccgcga
361 gctggcggag cgaggggtcc gcatcgtctc cagaggtagg gctcaacttt tcgctctaaa
421 ccctcgaagc ggcagcttgg tcaccgcggg caagatagac cgggaggagc tgtgtatggg
481 gtccatcaag tgtcagttaa atctagagat tctaatggaa gatataggga aaatatacgg
541 agtagaaata gaagtgaggg acattaacga caacgcaccc tacttccgtg aaagtgaatt
601 agaaataaaa atgagtgaaa acgccgccgc tggaatgcga ttccctcttc cccacgcttg
661 ggatccagat atcgggaaga actctcttca gagctaccag ctcagcccga atgctcactt
721 ctcgctcgag gtgcagaagg gagctgatgg taacaagtac ccagaattgg tgctggagag
781 ctcgctggac cgggaggaaa aggccgctca cctcctagtc ctcaccgctt cggacgcggg
841 agacccggtt cgctccggca cggcgcgcat ccttgtgacg gtcctagatg caaatgacaa
901 cgcgccagcg tttgctcggt ccgagtaccg cgtgaatgtg cgggagaacg tggccgtggg
961 cactcagctg ctgctggtca acgccaccga ccgggacgaa ggatccaatg cggaagtgat
1021 ctattccttc cggtatgtag atgacaaggc agctaaagtt ttcaagctag acagtaattt
1081 gggaacaata tcaacaatag gggagctgaa ccatgaagaa tcggggttct acgagatgga
1141 agtgcaagca acagataacg cgggattttc tgcacgggcc aaggtcctgg tcacagttct
1201 ggacgtgaac gacaatgccc ctgaagtagc catcacctcc ctcaacagcc ccgttccaga
1261 aaactctccc cgagggacat taatagccct tttaaatgta aatgaccaag attctgggga
1321 aaatggacag gtaatctgtt ccatccaaga gaatctgccc tttaaattag aaaagtctta
1381 cggaaactac tatagtttac tcacagatgc agtcctagac cgtgaacagg ttcctagtta
1441 taatatcacg gtgaccgcca ctgacagggg aagtccgccc ctgacaaccg aaactcacct
1501 ctcgctgaat gtagcggacg cgaacgataa cccgcccatt ttccttcagg cctcatactg
1561 ggcctatatc caggagaata accctagagg ggcttctatc gcgtccgtga ccgcccacga
1621 ccctgacagt gacaaaaatg cccaagtcac ttactcccta gctgaggaca cacaccaggg
1681 cgtgcccctt tcctcttatg tctctatcaa ctcggatact ggtgtcctgt acgcgctgca
1741 ctcctttgac tatgagcagt tcccagacct acagctgcaa gtgatagcac gtgacagcgg
1801 ggagccgccg ctcagcagca acgtgtcgct gagcctgttc gtgctggatc agaatgacaa
1861 cacccccgaa atcttgtacc ccactctccc taccgatggt tctactggag tggagctagc
1921 accccgctca gcagagcctg gctatctggt gacaaaggtg gtggcagtgg acagagactc
1981 aggacaaaac gcctggctgt cctaccgtct gctaaaggcc agcgagccag gactcttctc
2041 ggtggggctg cacaccggcg aggtgagcac ggctcgggcc ctgatggaca gagatgctct
2101 caagcagaac cttgtagtgt ctgtgcagga ccacggccag cctcctctct ccgccactgt
2161 cacgctcact gtggcgatcg ccgacagtat ccccgacgtc ctggcagatt tggacaatct
2221 agaatctcct accacctctg aaacctcagg tctcacgctg tatctggtgg tggccgtggc
2281 agcggtctcc atggtcttcc tggtctttgt tctggtgctg ctggcgctca ggctgcggcg
2341 ctggcactca ctgcgcctgc tccgggctgc gggacccgga ttggctgacg ttgcagcctc
2401 tcgttttgtg ggcgtagatg gagtgcaagc tttcttgcag acctattcgc acgaggtctc
2461 gctcactgcg ggctcccgaa agagtcactt gattttcccg cagcccaact atgcagacac
2521 gctaatcagc caggagagct gcgagaaaac cgagcctctt ttgccatcga gtgatttggt
2581 attttctaaa gacaatcatg cattaaatca gcaagccccg cccaacactg actggcgttt
2641 ctctcaagcc cagagacccg gcacgagcgg atcccaaaat ggggatgaaa ccggcacctg
2701 gcccaacaac cagttcgata cagagatgct gcaagccatg atcttggcct ctgccagtga
2761 agccgctgat gggagctcca ctctgggagg gggcactggc actatgggtt tgagcgctcg
2821 atatggaccc cagtttaccc tgcagcacgt gcctgactac cgccagaacg tgtacatccc
2881 tggcagcaat gccacactga ccaacgcagc tggcaaacga gatggcaagg ctccggcagg
2941 cggcaatggc aacaagaaga agtcgggcaa gaaagagaag aagtaatatg gaggccaggc
3001 cttgagccac agggcagcct ccctccccag ccagtccagc ttgtccttac ttgtacccag
3061 gcctcagaat ttcagggctc accccaggat tctggtagga gccacagcca ggccatgctc
3121 cccgttggga aacagaaaca agtgcccaag ccaacacccc ctctttgtac cctagggggg
3181 ttgaatatgc aaagagagtt ctgctgggac cccctatcca atcagtgatt gtacccacat
3241 aggtagcagg gttagtgtgg atacacacac acacacacac acacacacac acacacacac
3301 aaacaccatg ccacactccc ctagttacag ctgaactccc catcttccaa cccagtcagg
3361 ctcattcatc tccagcctcc ctctccccac cccacccttt cagtcaacac cctctctttg
3421 agccaggtag ttgggctgtt ggggtgacag gtgagctaag ggggctccta gttctgaaca
3481 ggtgggagag tattacaatc ctttggcctc tccttcagtt cagctgtccc ccaaagcatg
3541 gtttggtacc agtcttctca tttcctccta gagcctgaga ccaatgctta agttttgggg
3601 aacagtcacc atgcccctgg tactgatgat gcttgctgga tttttgggaa ggcattttgc
3661 tactaagcct cttttcaatg cctggggact accagtcttc tgttctccat tgtttgatgt
3721 tcccactgca tgctgtgact tcctactcct caaagaagag actcctttgc atgtctggag
3781 acagtagggg gtggtaaact aaagggaagc tgagtgtata ctgctgggag tgggggcagt
3841 ggacaaaaca gcctgttaat agggtcttgc aaggggctct gtacgtaccc agggtactgg
3901 ctcaatcctc aaattctagc catagacaaa catcaggcca gacccctccc tcctggttca
3961 gcctgggcag cttgggctga gccaccagga ccaatggatt taagctgaca tttcagtcca
4021 agaagacttc taagtgagtt taagaccaga gaggaaagag gggcctctgt gggtgctggg
4081 tactccagag gtgcccttgg tgggagggtc agtggtccta gcaggaaggg agcccagcaa
4141 ggtcattctt ggaccctggg tctagtccgg tagctagaac aagggaccaa gtggctataa
4201 agtctcagcc aatgatgagg cttttcccct gggcctctgg gcccctgtat tcctcaagcc
4261 cctggcctcc accttaccag gtgccatttc tcagaaggcc actgcccagg cccccaggcc
4321 gccccctcgt ggccacagac cggttaaagc cccccagtgc ctccttgtgc atagaacttc
4381 ctctgcccga gcccttacag tagtgtagaa gcccccttcc tcctcccgct ggtgtagaat
4441 agccaatagt atagtgtggt gtgcttttac gtgatggcga gtgggcagcg ggcggtgggc
4501 tgtgcgcagc cgtctgtcct ttgaatctca atctgcctgc gcggccagtg ctgtgttttg
4561 tgctgtgtcc acacgctgcg gcgacccctc cctgtactga cttctctata aaagcttctc
4621 ttcgcatagt cacgtagctc ctgcccatcc cccttccgat atctctcgca agttttatac
4681 tctaatattt atatggcttt tttcttcgaa aattaaaaat aaaaaatggt ttcttctg
//