LOCUS AY574010 4688 bp mRNA linear ROD 05-JUN-2007
DEFINITION Rattus norvegicus protocadherin gamma a11 (Pcdhga11) mRNA, complete
cds.
ACCESSION AY574010
VERSION AY574010.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 4688)
AUTHORS Zhang,T., Haws,P. and Wu,Q.
TITLE Multiple variable first exons: a mechanism for cell- and
tissue-specific gene regulation
JOURNAL Genome Res. 14 (1), 79-89 (2004)
PUBMED 14672974
REFERENCE 2 (bases 1 to 4688)
AUTHORS Wu,Q.
TITLE Comparative genomics and diversifying selection of the clustered
vertebrate protocadherin genes
JOURNAL Genetics 169 (4), 2179-2188 (2005)
PUBMED 15744052
REFERENCE 3 (bases 1 to 4688)
AUTHORS Zou,C., Huang,W., Ying,G. and Wu,Q.
TITLE Sequence analysis and expression mapping of the rat clustered
protocadherin gene repertoires
JOURNAL Neuroscience 144 (2), 579-603 (2007)
PUBMED 17110050
REFERENCE 4 (bases 1 to 4688)
AUTHORS Wu,Q.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-2004) Department of Human Genetics, Eccles
Institute of Human Genetics, 15 North 2030 East, Salt Lake City, UT
84112, USA
FEATURES Location/Qualifiers
source 1..4688
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
gene 1..4688
/gene="Pcdhga11"
CDS 135..2936
/gene="Pcdhga11"
/note="PCDHGA11; a member of the protocadherin gamma
cluster"
/codon_start=1
/product="protocadherin gamma a11"
/protein_id="AAT77592.1"
/translation="MANQLQRLDRRALVPLCIFLGTLLTFGTGQIRYSVPEETDKGFF
VGNISKDLGLEPWEVADRGVRIVSRGKSQLFSLNPRGGSLVTAGRIDREELCDTVPSC
LLNLEILVEETLKIYGVEVEVMDINDNAPSFREEEVEIKVSEHTSPGSRFPLPKARDP
DAGMNSLQSYQLSPSSYFSLQVRGGTDGDKNPELVLEESLDREKEASHHLLLTALDGG
DPIRTGMVPIRVVVLDVNDHIPKFTQSVYRASVPENLSSGTRVLVVNATDPDEGINGE
VMYTFRKMKSKASEIFQLNSQTGEVLVGKPLDFEKYRFYEMEIQGQDGGGLLSTTMLL
ITVEDVNDNVPEITVTSSINSVPENSPSGTVIALLNVQDQDSGENGQVSCFIPSGLPF
KLEKTYGNYYKLVTDSELDREQVESYNITLIAKDQGSPPLSTATHLLLKVADANDNPP
VFTHSSYSAYIPENNPRGSSIFSVTAIDRDSRENAQVTYSLAEYSIQGSPLSSYVSIN
SDTGVLYALQSFDYEQFQTLQLGVTASDSGNPPLSSNISLTLFVLDQNDNTPEILYPS
LPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTG
EVRTARAMMDKDALKQSLVVTVQDHGQPPLSATVRLTVAVADSIPEVLEDLVSLESPA
NRDESSLTLYLVVAITAVSCIFLIFVMVLLALRLRRWHSSRLLQAASGLAGVPPSHFV
GVDGMHAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCGKSEPLLIPEDSAT
VLGKCEPTDIQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILAS
ASEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDG
KAPAGGNGNKKKSGKKEKK"
BASE COUNT 1117 a 1295 c 1193 g 1083 t
ORIGIN
1 cacctctgtt cgctttggaa gatgttttga atgcggaata cctggaacct tgtagacaca
61 aaagctgact cggaaaaaat aaattaaaaa taaaccggcg caagaccctc acggaacaac
121 gctcacaccc agctatggcg aatcagcttc agcgcctgga ccgccgcgcg ctggtcccgc
181 tgtgcatttt cctggggacc ttgctgacct ttgggacagg acaaatccga tattcggttc
241 cagaagagac agataaaggc ttcttcgtag gcaacatctc caaagacctg gggctggagc
301 cctgggaggt cgcggaccgc ggagtccgca tcgtctccag aggaaaatcg cagcttttct
361 ctctgaatcc gcgaggcggc agcttggtga ctgcgggtag gatcgatcgt gaagagctat
421 gtgatacggt gccctcctgc ttgctgaatt tggaaattct cgtggaggaa accctgaaga
481 tttatggagt ggaggtggaa gtaatggaca ttaatgataa cgcccccagc ttccgggaag
541 aagaggtaga gatcaaagtc agcgagcaca ctagtcctgg gtcgcgattt ccacttccta
601 aggctaggga tccagatgca gggatgaact ccctccagag ctaccagctc agcccaagca
661 gttatttttc cttgcaggtg agaggcggga ctgatgggga caagaatcca gagctagtgc
721 tggaggagag cctggaccgg gagaaagagg catcccacca cctcctcctc acagccttgg
781 atgggggaga tcccatccgc acggggatgg ttcccatccg cgtggtggtc ctcgacgtaa
841 atgaccacat tccaaaattt acacagtctg tgtatagagc gagtgtgcct gaaaacctca
901 gctccggaac gcgggtgctc gtggtaaatg ccacagaccc agatgagggt atcaacgggg
961 aagtgatgta cactttccgg aaaatgaaaa gcaaagcttc tgaaatattt caactgaatt
1021 ctcaaactgg agaagttcta gtcggaaagc cgctggattt tgaaaaatat agattctatg
1081 agatggaaat tcaaggccaa gatggtgggg ggttgttgag caccaccatg ttgctgatca
1141 cggttgaaga tgtgaatgac aacgttccag agataactgt cacctcttcc atcaactcag
1201 tgccggaaaa ttctccttcg ggtacagtaa ttgctcttct aaacgttcag gatcaagatt
1261 ctggagaaaa tggtcaggtc tcttgcttca ttcctagtgg tcttcctttt aagttagaga
1321 aaacctatgg aaattattat aaattggtaa ccgatagtga actggaccgg gagcaggtag
1381 agagctacaa tattacactg atcgccaaag atcagggaag tccacccttg tctacagcaa
1441 ctcacctcct gctcaaagtg gcagatgcca atgacaatcc tccagttttc actcactcgt
1501 cttactcggc ctacattcct gaaaacaacc ctagaggttc ctccatcttc tcagtgaccg
1561 ccattgatag ggacagcaga gaaaatgccc aggtcacgta ctctctggct gagtacagta
1621 tccagggatc acctctgtcc tcttacgttt ctatcaactc agacaccggt gtgctgtatg
1681 ccttgcaatc cttcgactat gagcagttcc agaccctaca actgggagtg accgctagtg
1741 acagtgggaa cccaccatta agcagcaata tttcactgac ccttttcgtg ctggaccaga
1801 atgacaacac tccagagatc ctatacccct ctctccctac tgatggctcc actggtgtgg
1861 aattggcgcc tcgctccgca gagccaggtt atttagtgac caaggtggtg gctgtagaca
1921 gagactccgg gcagaacgct tggctgtcct accgcctgct caaagccagc gagccaggcc
1981 tcttctccgt ggggctgcac acgggggagg tgcgcacggc ccgagccatg atggataaag
2041 atgctctcaa gcagagcctc gttgtaactg tgcaggatca cggccagcct cctctctccg
2101 ccactgtcag gctcaccgtg gcggtggctg acagcattcc agaggttctg gaggacttgg
2161 ttagtctaga gtctcctgcc aaccgggatg agtcgagtct caccctctac ctagtggtgg
2221 ccatcactgc agtctcctgc atcttcctca tctttgtcat ggtactgctg gctctcaggc
2281 ttcggcgctg gcactcatca cgtctgctcc aggctgccag cggattggct ggcgtgcctc
2341 cttcgcactt tgtgggtgtg gacgggatgc atgctttcct ccagacctat tcccacgaag
2401 tttcgctcac tgcagactca aggaagagtc acctgatctt cccgcagccc aactatgcag
2461 acacgctcat cagccaggag agctgtggga aaagcgagcc tctactaata cctgaagact
2521 cagctacagt tttaggcaaa tgtgagccaa ccgatattca gcaagccccg cccaacactg
2581 actggcgttt ctctcaagcc cagagacccg gcacgagcgg atcccaaaat ggggatgaaa
2641 ccggcacctg gcccaacaac cagttcgata cagagatgct gcaagccatg atcttggcct
2701 ctgccagtga agccgctgat gggagctcca ctctgggagg gggcactggc actatgggtt
2761 tgagcgctcg atatggaccc cagtttaccc tgcagcacgt gcctgactac cgccagaacg
2821 tgtacatccc tggcagcaat gccacactga ccaacgcagc tggcaaacga gatggcaagg
2881 ctccggcagg cggcaatggc aacaagaaga agtcgggcaa gaaagagaag aagtaatatg
2941 gaggccaggc cttgagccac agggcagcct ccctccccag ccagtccagc ttgtccttac
3001 ttgtacccag gcctcagaat ttcagggctc accccaggat tctggtagga gccacagcca
3061 ggccatgctc cccgttggga aacagaaaca agtgcccaag ccaacacccc ctctttgtac
3121 cctagggggg ttgaatatgc aaagagagtt ctgctgggac cccctatcca atcagtgatt
3181 gtacccacat aggtagcagg gttagtgtgg atacacacac acacacacac acacacacac
3241 acacacacac aaacaccatg ccacactccc ctagttacag ctgaactccc catcttccaa
3301 cccagtcagg ctcattcatc tccagcctcc ctctccccac cccacccttt cagtcaacac
3361 cctctctttg agccaggtag ttgggctgtt ggggtgacag gtgagctaag ggggctccta
3421 gttctgaaca ggtgggagag tattacaatc ctttggcctc tccttcagtt cagctgtccc
3481 ccaaagcatg gtttggtacc agtcttctca tttcctccta gagcctgaga ccaatgctta
3541 agttttgggg aacagtcacc atgcccctgg tactgatgat gcttgctgga tttttgggaa
3601 ggcattttgc tactaagcct cttttcaatg cctggggact accagtcttc tgttctccat
3661 tgtttgatgt tcccactgca tgctgtgact tcctactcct caaagaagag actcctttgc
3721 atgtctggag acagtagggg gtggtaaact aaagggaagc tgagtgtata ctgctgggag
3781 tgggggcagt ggacaaaaca gcctgttaat agggtcttgc aaggggctct gtacgtaccc
3841 agggtactgg ctcaatcctc aaattctagc catagacaaa catcaggcca gacccctccc
3901 tcctggttca gcctgggcag cttgggctga gccaccagga ccaatggatt taagctgaca
3961 tttcagtcca agaagacttc taagtgagtt taagaccaga gaggaaagag gggcctctgt
4021 gggtgctggg tactccagag gtgcccttgg tgggagggtc agtggtccta gcaggaaggg
4081 agcccagcaa ggtcattctt ggaccctggg tctagtccgg tagctagaac aagggaccaa
4141 gtggctataa agtctcagcc aatgatgagg cttttcccct gggcctctgg gcccctgtat
4201 tcctcaagcc cctggcctcc accttaccag gtgccatttc tcagaaggcc actgcccagg
4261 cccccaggcc gccccctcgt ggccacagac cggttaaagc cccccagtgc ctccttgtgc
4321 atagaacttc ctctgcccga gcccttacag tagtgtagaa gcccccttcc tcctcccgct
4381 ggtgtagaat agccaatagt atagtgtggt gtgcttttac gtgatggcga gtgggcagcg
4441 ggcggtgggc tgtgcgcagc cgtctgtcct ttgaatctca atctgcctgc gcggccagtg
4501 ctgtgttttg tgctgtgtcc acacgctgcg gcgacccctc cctgtactga cttctctata
4561 aaagcttctc ttcgcatagt cacgtagctc ctgcccatcc cccttccgat atctctcgca
4621 agttttatac tctaatattt atatggcttt tttcttcgaa aattaaaaat aaaaaatggt
4681 ttcttctg
//