LOCUS AY563166 3939 bp mRNA linear HUM 10-MAY-2005 DEFINITION Homo sapiens cadherin 23 isoform B2 (CDH23) mRNA, complete cds. ACCESSION AY563166 VERSION AY563166.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3939) AUTHORS Lagziel,A., Ahmed,Z.M., Schultz,J.M., Morell,R.J., Belyantseva,I.A. and Friedman,T.B. TITLE Spatiotemporal pattern and isoforms of cadherin 23 in wild type and waltzer mice during inner ear hair cell development JOURNAL Dev. Biol. 280 (2), 295-306 (2005) PUBMED 15882574 REFERENCE 2 (bases 1 to 3939) AUTHORS Lagziel,A., Ahmed,Z.M. and Friedman,T.B. TITLE Direct Submission JOURNAL Submitted (03-MAR-2004) Laboratory of Molecular Genetics, NIDCD, NIH, 5 Research Court, Rockville, MD 20850, USA FEATURES Location/Qualifiers source 1..3939 /db_xref="H-InvDB:HIT000255519" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /tissue_type="retina" gene 1..3939 /gene="CDH23" CDS 318..3557 /gene="CDH23" /note="contains seven cadherin repeats; lacks exon 68" /codon_start=1 /product="cadherin 23 isoform B2" /protein_id="AAT72166.1" /translation="MVKSPMNRELVATYEVTLSVIDNASDLPERSVSVPNAKLTVNVL DVNDNTPQFKPFGITYYMERILEGATPGTTLIAVAAVDPDKGLNGLVTYTLLDLVPPG YVQLEDSSAGKVIANRTVDYEEVHWLNFTVRASDNGSPPRAAEIPVYLEIVDINDNNP IFDQPSYQEAVFEDVPVGTIILTVTATDADSGNFALIEYSLGDGESKFAINPTTGDIY VLSSLDREKKDHYILTALAKDNPGDVASNRRENSVQVVIQVLDVNDCRPQFSKPQFST SVYENEPAGTSVITMMATDQDEGPNGELTYSLEGPGVEAFHVDMDSGLVTTQRPLQSY EKFSLTVVATDGGEPPLWGTTMLLVEVIDVNDNRPVFVRPPNGTILHIREEIPLRSNV YEVYATDKDEGLNGAVRYSFLKTAGNRDWEFFIIDPISGLIQTAQRLDRESQAVYSLI LVASDLGQPVPYETMQPLQVALEDIDDNEPLFVRPPKGSPQYQLLTVPEHSPRGTLVG NVTGAVDADEGPNAIVYYFIAAGNEEKNFHLQPDGCLLVLRDLDREREAIFSFIVKAS SNRSWTPPRGPSPTLDLVADLTLQEVRVVLEDINDQPPRFTKAEYTAGVATDAKVGSE LIQVLALDADIGNNSLVFYSILAIHYFRALANDSEDVGQVFTMGSMDGILRTFDLFMA YSPGYFVVDIVARDLAGHNDTAIIGIYILRDDQRVKIVINEIPDRVRGFEEEFIHLLS NITGAIVNTDNVQFHVDKKGRVNFAQTELLIHVVNRDTNRILDVDRVIQMIDENKEQL RNLFRNYNVLDVQPAISVRLPDDMSALQMAIIVLAILLFLAAMLFVLMNWYYRTVHKR KLKAIVAGSAGNRGFIDIMDMPNTNKYSFDGANPVWLDPFCRNLELAAQAEHEDDLPE NLSEIADLWNSPTRTHGTFGREPAAVKPDDDRYLRAAIQEYDNIAKLGQIIREGPIKL IQTELDEEPGDHSPGQGSLRFRHKPPVELKGPDGIHVVHGSTGTLLATDLNSLPEEDQ KGLGRSLETLTAAEATAFERNARTESAKSTPLHKLRDVIMETPLEITEL" BASE COUNT 859 a 1239 c 1101 g 738 t ORIGIN 1 ccctgctgca ccctgaacta actgatgtta accctcttct ctcttcctca tggctggcag 61 gcccacaggt ttgagctctg tttctctgtc acttcccacc tcatctcyyc tctgcctcac 121 cccattgcct tcctccatgc ccaccacacc cccaccaccc ttcctgtcct gtggggcctg 181 ggccaaggcc gtggcccagc ctttgcagac tgaatgcagc cgccctctcc ccatcctcgc 241 tccccagcct gggggacagg gagcgagagt aggaagagga ggaggaggag gaggaggagg 301 cggcccaggg atctgtaatg gtgaagtccc ccatgaatcg ggagctggtt gccacctatg 361 aggtcactct ctcagtgatt gacaatgcca gcgacctacc agagcgctct gtcagtgtgc 421 caaatgccaa gctgactgtc aacgtcctgg acgtcaatga caatacgccc cagttcaagc 481 cctttgggat cacctactac atggagcgga tcctggaggg ggccacccct gggaccacac 541 tcattgctgt ggcagccgtg gaccctgaca agggccttaa tgggctggtc acctacaccc 601 tgctggacct ggtgccccca gggtatgtcc agctggagga ctcctcggca gggaaggtca 661 ttgccaaccg gacagtggac tacgaggagg tgcactggct caactttacc gtgagggcct 721 cagacaacgg gtccccgccc cgggcagctg agatccctgt ctacctggaa atcgtggaca 781 tcaatgacaa caaccccatc tttgaccagc cctcctacca ggaggctgtc tttgaggatg 841 tgcctgtggg cacaatcatc ctgacagtca ctgccactga tgctgactca ggcaactttg 901 cactcattga gtacagcctt ggagatggag agagcaagtt tgccatcaac cccaccacgg 961 gtgacatcta tgtgctgtct tctctggacc gggagaagaa ggaccactat atcctgactg 1021 ccttggccaa agacaaccct ggggatgtag ccagcaaccg tcgcgaaaat tcagtgcagg 1081 tggtgatcca agtgctggat gtcaatgact gccggccaca gttctccaag ccccagttca 1141 gcacaagcgt gtatgagaat gagccggcgg gcacctcggt catcaccatg atggccactg 1201 accaggatga aggtcccaat ggagagttga cctactcact tgagggccct ggcgtggagg 1261 ccttccatgt ggacatggac tcgggcttgg tgaccacaca gcggccactg cagtcctacg 1321 agaagttcag tctgaccgtg gtggccacag atggtggaga gcccccactc tggggcacca 1381 ccatgctcct ggtggaggtc atcgacgtca atgacaaccg ccctgtcttt gtgcgcccac 1441 ccaacggcac catcctccac atcagagagg agatcccgct gcgctccaac gtgtacgagg 1501 tctacgccac ggacaaggat gagggcctca acggggcggt gcgctacagc ttcctgaaga 1561 ctgcgggcaa ccgggactgg gagttcttca tcatcgaccc aatcagcggc ctcatccaga 1621 ctgctcagcg cctggaccgc gagtcgcagg cggtgtacag cctcatcttg gtggccagcg 1681 acctgggcca gccagtgcca tacgagacta tgcagccgct gcaggtggcc ctggaggaca 1741 tcgatgacaa cgaacccctt ttcgtgaggc ctccaaaagg cagcccccag taccagctgc 1801 tgacagtgcc tgagcactca ccacgcggca ccctcgtggg caacgtgaca ggcgcagtgg 1861 atgcagatga gggccccaac gcgatcgtgt actacttcat cgcagccggc aacgaagaga 1921 agaacttcca tctgcagccc gatgggtgtc tgctggtgct gcgggacctg gaccgggagc 1981 gagaagccat cttctccttc atcgtcaagg cctccagcaa tcgcagctgg acacctcccc 2041 gtggaccctc cccaaccctc gacctggttg ctgacctcac actgcaggag gtgcgcgttg 2101 tgctagagga catcaacgac cagccaccac gcttcaccaa ggctgagtac actgcagggg 2161 tggccaccga cgccaaggtg ggctcagagt tgatccaggt gctggccctg gatgcagaca 2221 ttggcaacaa cagccttgtc ttctacagca ttctggccat ccactacttc cgggcccttg 2281 ccaacgactc tgaagatgtg ggccaggtct tcaccatggg gagcatggac ggcattctgc 2341 gcaccttcga cctcttcatg gcctacagcc ccggctactt cgtggtggac attgtggccc 2401 gagacctggc aggccacaac gacacggcca tcatcggcat ctacatcctg agggacgacc 2461 agcgcgtcaa gatcgtcatt aacgagatcc ccgaccgtgt gcgcggcttc gaggaggagt 2521 tcatccacct gctctccaac atcactgggg ccattgtcaa tactgacaat gtgcagttcc 2581 atgtggacaa gaagggccgg gtgaactttg cgcagacaga actgcttatc cacgtggtga 2641 accgcgatac caaccgcatc ctggacgtgg accgggtgat ccagatgatc gatgagaaca 2701 aggagcagct acggaatctt ttccggaact acaacgtcct ggacgtgcag cctgccatct 2761 ctgtccggct gccggatgac atgtctgccc tgcagatggc gatcatcgtc ctggctatcc 2821 tcctgttcct ggccgccatg ctctttgtcc tcatgaactg gtactacagg actgtacaca 2881 agaggaagct caaggccatt gtggctggct cagctgggaa tcgtggcttc atcgacatca 2941 tggacatgcc taacaccaac aagtactcct ttgatggagc caaccctgtg tggctggatc 3001 ccttctgtcg gaacctggag ctggccgccc aggcggagca tgaggatgac ctaccggaga 3061 acctgagtga gatcgccgac ctgtggaaca gccccacgcg cacccatgga acttttgggc 3121 gtgagccagc agctgtcaag cctgatgatg accgatacct gcgggctgcc atccaggagt 3181 atgacaacat tgccaagctg ggccagatca ttcgtgaggg gccaatcaag ctgatacaga 3241 ctgagctgga cgaggagcca ggagaccaca gcccagggca gggtagcctg cgcttccgcc 3301 acaagccacc agtggagctc aaggggcccg atgggatcca tgtggtgcac ggcagcacgg 3361 gcacgctgct ggccaccgac ctcaacagcc tgcccgagga agaccagaag ggcctgggcc 3421 gctcgctgga gacgctgacc gctgccgagg ccactgcctt cgagcgcaac gcccgcacag 3481 aatccgccaa atccacaccc ctgcacaaac ttcgcgacgt gatcatggag acccccctgg 3541 agatcacaga gctgtgacta gacagggaag ccttgtgggt gtgagcagca cccatccacc 3601 gtcccctccc agggagcaag ggcagggaca gggccggtcg ggggggaccc tccaaggcca 3661 ggccttgggg acaaccttgg cttggccctg gcagcccgca tcagctgctc agatcccact 3721 tttgccagac gctcattcag catctgacct ctaccttcat aagatctgtt atttttataa 3781 gaaaaccaaa caaaaatgtt aagcatctaa ggacaaggta aggagggtca ctggggccca 3841 agagtctggg gaccagcttg gctcaggctg agctgaaaga ggccaaacag gccctcctcc 3901 ctcccagctc caccccgcaa gcaccatccc ctccggcta //