LOCUS AY563165 4044 bp mRNA linear HUM 10-MAY-2005
DEFINITION Homo sapiens cadherin 23 isoform B1 (CDH23) mRNA, complete cds.
ACCESSION AY563165
VERSION AY563165.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4044)
AUTHORS Lagziel,A., Ahmed,Z.M., Schultz,J.M., Morell,R.J., Belyantseva,I.A.
and Friedman,T.B.
TITLE Spatiotemporal pattern and isoforms of cadherin 23 in wild type and
waltzer mice during inner ear hair cell development
JOURNAL Dev. Biol. 280 (2), 295-306 (2005)
PUBMED 15882574
REFERENCE 2 (bases 1 to 4044)
AUTHORS Lagziel,A., Ahmed,Z.M. and Friedman,T.B.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2004) Laboratory of Molecular Genetics, NIDCD,
NIH, 5 Research Court, Rockville, MD 20850, USA
FEATURES Location/Qualifiers
source 1..4044
/db_xref="H-InvDB:HIT000255518"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/tissue_type="retina"
gene 1..4044
/gene="CDH23"
CDS 318..3662
/gene="CDH23"
/codon_start=1
/product="cadherin 23 isoform B1"
/protein_id="AAT72165.1"
/translation="MVKSPMNRELVATYEVTLSVIDNASDLPERSVSVPNAKLTVNVL
DVNDNTPQFKPFGITYYMERILEGATPGTTLIAVAAVDPDKGLNGLVTYTLLDLVPPG
YVQLEDSSAGKVIANRTVDYEEVHWLNFTVRASDNGSPPRAAEIPVYLEIVDINDNNP
IFDQPSYQEAVFEDVPVGTIILTVTATDADSGNFALIEYSLGDGESKFAINPTTGDIY
VLSSLDREKKDHYILTALAKDNPGDVASNRRENSVQVVIQVLDVNDCRPQFSKPQFST
SVYENEPAGTSVITMMATDQDEGPNGELTYSLEGPGVEAFHVDMDSGLVTTQRPLQSY
EKFSLTVVATDGGEPPLWGTTMLLVEVIDVNDNRPVFVRPPNGTILHIREEIPLRSNV
YEVYATDKDEGLNGAVRYSFLKTAGNRDWEFFIIDPISGLIQTAQRLDRESQAVYSLI
LVASDLGQPVPYETMQPLQVALEDIDDNEPLFVRPPKGSPQYQLLTVPEHSPRGTLVG
NVTGAVDADEGPNAIVYYFIAAGNEEKNFHLQPDGCLLVLRDLDREREAIFSFIVKAS
SNRSWTPPRGPSPTLDLVADLTLQEVRVVLEDINDQPPRFTKAEYTAGVATDAKVGSE
LIQVLALDADIGNNSLVFYSILAIHYFRALANDSEDVGQVFTMGSMDGILRTFDLFMA
YSPGYFVVDIVARDLAGHNDTAIIGIYILRDDQRVKIVINEIPDRVRGFEEEFIHLLS
NITGAIVNTDNVQFHVDKKGRVNFAQTELLIHVVNRDTNRILDVDRVIQMIDENKEQL
RNLFRNYNVLDVQPAISVRLPDDMSALQMAIIVLAILLFLAAMLFVLMNWYYRTVHKR
KLKAIVAGSAGNRGFIDIMDMPNTNKYSFDGANPVWLDPFCRNLELAAQAEHEDDLPE
NLSEIADLWNSPTRTHGTFGREPAAVKPDDDRYLRAAIQEYDNIAKLGQIIREGPIKG
SLLKVVLEDYLRLKKLFAQRMVQKASSCHSSISELIQTELDEEPGDHSPGQGSLRFRH
KPPVELKGPDGIHVVHGSTGTLLATDLNSLPEEDQKGLGRSLETLTAAEATAFERNAR
TESAKSTPLHKLRDVIMETPLEITEL"
BASE COUNT 880 a 1271 c 1129 g 762 t
ORIGIN
1 ccctgctgca ccctgaacta actgatgtta accctcttct ctcttcctca tggctggcag
61 gcccacaggt ttgagctctg tttctctgtc acttcccacc tcatctcyyc tctgcctcac
121 cccattgcct tcctccatgc ccaccacacc cccaccaccc ttcctgtcct gtggggcctg
181 ggccaaggcc gtggcccagc ctttgcagac tgaatgcagc cgccctctcc ccatcctcgc
241 tccccagcct gggggacagg gagcgagagt aggaagagga ggaggaggag gaggaggagg
301 cggcccaggg atctgtaatg gtgaagtccc ccatgaatcg ggagctggtt gccacctatg
361 aggtcactct ctcagtgatt gacaatgcca gcgacctacc agagcgctct gtcagtgtgc
421 caaatgccaa gctgactgtc aacgtcctgg acgtcaatga caatacgccc cagttcaagc
481 cctttgggat cacctactac atggagcgga tcctggaggg ggccacccct gggaccacac
541 tcattgctgt ggcagccgtg gaccctgaca agggccttaa tgggctggtc acctacaccc
601 tgctggacct ggtgccccca gggtatgtcc agctggagga ctcctcggca gggaaggtca
661 ttgccaaccg gacagtggac tacgaggagg tgcactggct caactttacc gtgagggcct
721 cagacaacgg gtccccgccc cgggcagctg agatccctgt ctacctggaa atcgtggaca
781 tcaatgacaa caaccccatc tttgaccagc cctcctacca ggaggctgtc tttgaggatg
841 tgcctgtggg cacaatcatc ctgacagtca ctgccactga tgctgactca ggcaactttg
901 cactcattga gtacagcctt ggagatggag agagcaagtt tgccatcaac cccaccacgg
961 gtgacatcta tgtgctgtct tctctggacc gggagaagaa ggaccactat atcctgactg
1021 ccttggccaa agacaaccct ggggatgtag ccagcaaccg tcgcgaaaat tcagtgcagg
1081 tggtgatcca agtgctggat gtcaatgact gccggccaca gttctccaag ccccagttca
1141 gcacaagcgt gtatgagaat gagccggcgg gcacctcggt catcaccatg atggccactg
1201 accaggatga aggtcccaat ggagagttga cctactcact tgagggccct ggcgtggagg
1261 ccttccatgt ggacatggac tcgggcttgg tgaccacaca gcggccactg cagtcctacg
1321 agaagttcag tctgaccgtg gtggccacag atggtggaga gcccccactc tggggcacca
1381 ccatgctcct ggtggaggtc atcgacgtca atgacaaccg ccctgtcttt gtgcgcccac
1441 ccaacggcac catcctccac atcagagagg agatcccgct gcgctccaac gtgtacgagg
1501 tctacgccac ggacaaggat gagggcctca acggggcggt gcgctacagc ttcctgaaga
1561 ctgcgggcaa ccgggactgg gagttcttca tcatcgaccc aatcagcggc ctcatccaga
1621 ctgctcagcg cctggaccgc gagtcgcagg cggtgtacag cctcatcttg gtggccagcg
1681 acctgggcca gccagtgcca tacgagacta tgcagccgct gcaggtggcc ctggaggaca
1741 tcgatgacaa cgaacccctt ttcgtgaggc ctccaaaagg cagcccccag taccagctgc
1801 tgacagtgcc tgagcactca ccacgcggca ccctcgtggg caacgtgaca ggcgcagtgg
1861 atgcagatga gggccccaac gcgatcgtgt actacttcat cgcagccggc aacgaagaga
1921 agaacttcca tctgcagccc gatgggtgtc tgctggtgct gcgggacctg gaccgggagc
1981 gagaagccat cttctccttc atcgtcaagg cctccagcaa tcgcagctgg acacctcccc
2041 gtggaccctc cccaaccctc gacctggttg ctgacctcac actgcaggag gtgcgcgttg
2101 tgctagagga catcaacgac cagccaccac gcttcaccaa ggctgagtac actgcagggg
2161 tggccaccga cgccaaggtg ggctcagagt tgatccaggt gctggccctg gatgcagaca
2221 ttggcaacaa cagccttgtc ttctacagca ttctggccat ccactacttc cgggcccttg
2281 ccaacgactc tgaagatgtg ggccaggtct tcaccatggg gagcatggac ggcattctgc
2341 gcaccttcga cctcttcatg gcctacagcc ccggctactt cgtggtggac attgtggccc
2401 gagacctggc aggccacaac gacacggcca tcatcggcat ctacatcctg agggacgacc
2461 agcgcgtcaa gatcgtcatt aacgagatcc ccgaccgtgt gcgcggcttc gaggaggagt
2521 tcatccacct gctctccaac atcactgggg ccattgtcaa tactgacaat gtgcagttcc
2581 atgtggacaa gaagggccgg gtgaactttg cgcagacaga actgcttatc cacgtggtga
2641 accgcgatac caaccgcatc ctggacgtgg accgggtgat ccagatgatc gatgagaaca
2701 aggagcagct acggaatctt ttccggaact acaacgtcct ggacgtgcag cctgccatct
2761 ctgtccggct gccggatgac atgtctgccc tgcagatggc gatcatcgtc ctggctatcc
2821 tcctgttcct ggccgccatg ctctttgtcc tcatgaactg gtactacagg actgtacaca
2881 agaggaagct caaggccatt gtggctggct cagctgggaa tcgtggcttc atcgacatca
2941 tggacatgcc taacaccaac aagtactcct ttgatggagc caaccctgtg tggctggatc
3001 ccttctgtcg gaacctggag ctggccgccc aggcggagca tgaggatgac ctaccggaga
3061 acctgagtga gatcgccgac ctgtggaaca gccccacgcg cacccatgga acttttgggc
3121 gtgagccagc agctgtcaag cctgatgatg accgatacct gcgggctgcc atccaggagt
3181 atgacaacat tgccaagctg ggccagatca ttcgtgaggg gccaatcaag ggctcgctgc
3241 tgaaggtggt cctggaggat tacctgcggc tcaaaaagct ctttgcacag cggatggtgc
3301 aaaaagcctc ctcctgccac tcctccatct ctgagctgat acagactgag ctggacgagg
3361 agccaggaga ccacagccca gggcagggta gcctgcgctt ccgccacaag ccaccagtgg
3421 agctcaaggg gcccgatggg atccatgtgg tgcacggcag cacgggcacg ctgctggcca
3481 ccgacctcaa cagcctgccc gaggaagacc agaagggcct gggccgctcg ctggagacgc
3541 tgaccgctgc cgaggccact gccttcgagc gcaacgcccg cacagaatcc gccaaatcca
3601 cacccctgca caaacttcgc gacgtgatca tggagacccc cctggagatc acagagctgt
3661 gactagacag ggaagccttg tgggtgtgag cagcacccat ccaccgtccc ctcccaggga
3721 gcaagggcag ggacagggcc ggtcgggggg gaccctccaa ggccaggcct tggggacaac
3781 cttggcttgg ccctggcagc ccgcatcagc tgctcagatc ccacttttgc cagacgctca
3841 ttcagcatct gacctctacc ttcataagat ctgttatttt tataagaaaa ccaaacaaaa
3901 atgttaagca tctaaggaca aggtaaggag ggtcactggg gcccaagagt ctggggacca
3961 gcttggctca ggctgagctg aaagaggcca aacaggccct cctccctccc agctccaccc
4021 cgcaagcacc atcccctccg gcta
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