LOCUS       AY388963                3469 bp    mRNA    linear   HUM 09-DEC-2003
DEFINITION  Homo sapiens protocadherin 15 isoform B (PCDH15) mRNA, complete
            cds, alternatively spliced.
ACCESSION   AY388963
VERSION     AY388963.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3469)
  AUTHORS   Ahmed,Z.M., Riazuddin,S., Ahmad,J., Bernstein,S.L., Guo,Y.,
            Sabar,M.F., Sieving,P., Riazuddin,S., Griffith,A.J., Friedman,T.B.,
            Belyantseva,I.A. and Wilcox,E.R.
  TITLE     PCDH15 is expressed in the neurosensory epithelium of the eye and
            ear and mutant alleles are responsible for both USH1F and DFNB23
  JOURNAL   Hum. Mol. Genet. 12 (24), 3215-3223 (2003)
   PUBMED   14570705
REFERENCE   2  (bases 1 to 3469)
  AUTHORS   Ahmed,Z.M., Riazuddin,S., Ahmad,J., Bernstein,S.L., Guo,Y.,
            Sabir,M.F., Sieving,P., Riazuddin,S., Griffith,A.J., Friedman,T.B.,
            Belyantseva,I.A. and Wilcox,E.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2003) Laboratory of Molecular Genetics, NIDCD,
            NIH, 5 Research Court, 2A-19, Rockville, MD 20850, USA
FEATURES             Location/Qualifiers
     source          1..3469
                     /db_xref="H-InvDB:HIT000253461"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="10"
                     /map="10q21.2"
     gene            1..3469
                     /gene="PCDH15"
     CDS             374..2887
                     /gene="PCDH15"
                     /note="alternatively spliced"
                     /codon_start=1
                     /product="protocadherin 15 isoform B"
                     /protein_id="AAR26468.1"
                     /translation="MTFSHSGNTAKVYIEIQDENNHPPVFQKKFYIGGVSEDARMFTS
                     VLRVKATDKDTGNYSVMAYRLIIPPIKEGKEGFVVETYTGLIKTAMLFHNMRRSYFKF
                     QVIATDDYGKGLSGKADVLVSVVNQLDMQVIVSNVPPTLVEKKIEDLTEILDRYVQEQ
                     IPGAKVVVESIGARRHGDAFSLEDYTKCDLTVYAIDPQTNRAIDRNELFKFLDGKLLD
                     INKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLALAFIIILCCIPAILV
                     VLVSYRQFKVRQAECTKTARIQAALPAAKPAVPAPAPVAAPPPPPPPPPGAHLYEELG
                     DSSILFLLYHFQQSRGNNSVSEDRKHQQVVMPFSSNTIEAHKSAHVDGSLKSNKLKSA
                     RKFTFLSDEDDLSAHNPLYKENISQVSTNSDISQRTDFVDPFSPKIQAKSKSLRGPRE
                     KIQRLWSQSVSLPRRLMRKVPNRPEIIDLQQWQGTRQKAENENTGICTNKRGSSNPLL
                     TTEEANLTEKEEIRQGETLMIEGTEQLKSLSSDSSFCFPRPHFSFSTLPTVSRTVELK
                     SEPNVISSPAECSLELSPSRPCVLHSSLSRRETPICMLPIETERNIFENFAHPPNISP
                     SACPLPPPPPISPPSPPPAPAPLAPPPDISPFSLFCPPPSPPSIPLPLPPPTFFPLSV
                     STSGPPTPPLLPPFPTPLPPPPPSIPCPPPPSASFLSTECVCITGVKCTTNLMPAEKI
                     KSSMTQLSTTTVCKTDPQREPKGILRHVKNLAELEKSVANMYSQIEKNYLRTNVSELQ
                     TMCPSEVTNMEITSEQNKGSLNNIVEGTEKQSHSQSTSL"
BASE COUNT         1070 a          781 c          634 g          984 t
ORIGIN      
        1 gcttccaagc ttctgccttg aaataatcaa tatccaaatt tggtggaaga acatggtaca
       61 atccttagtg gggaagcacg tgagccaagg aaattgatga tgtcatgtac attgtataca
      121 catgaataaa aaagtcaaaa agaacgctgt tctagtgatt taactatagg tgtatactta
      181 tttgcttttc cttttcttac tggccaacat ttattttaca ttctttaagt agacacacta
      241 caatttctta taattgtccc agtgacttct caagtggata atctggtgac ttctccttcc
      301 cgagacaagg agcaagcaca tgacccaaac taggacagtc aggacacatt agaaagacac
      361 gacaggggag cagatgacgt ttagtcactc aggcaataca gctaaagtat acattgagat
      421 tcaggatgaa aataatcatc ccccagtgtt tcagaaaaaa ttctacatcg gaggtgtatc
      481 tgaagatgca agaatgttta cttctgtact cagagtgaag gctactgata aagatactgg
      541 caattatagt gtcatggcct acagactcat aataccacca attaaagagg gaaaagaagg
      601 atttgtagtg gaaacatata cagggcttat caaaactgct atgctcttcc ataatatgag
      661 gagatcctac ttcaagtttc aagttattgc aactgacgac tatgggaagg gactgagcgg
      721 caaagccgat gtactcgtct ccgtggtcaa tcagctggat atgcaagtca ttgtttccaa
      781 tgtgcctcct actctagtgg aaaaaaagat agaagatctt acagagatct tggatcgcta
      841 tgttcaggaa caaattcctg gtgccaaggt cgtagtggag tccattggag ctcgccggca
      901 tggagatgcc ttttccctag aagattacac caaatgtgac ttgactgtct atgcaattga
      961 cccccaaacc aacagagcca tcgatagaaa tgagcttttt aaatttttgg atggcaaact
     1021 acttgatatc aataaagact ttcagccgta ttatggggaa ggaggacgca ttctggagat
     1081 ccggactcca gaggcagtga ccagcattaa aaagagagga gaaagtctag gatacacaga
     1141 aggggccttg ttggctctgg ccttcatcat catcctctgc tgcattcctg ccatcttggt
     1201 ggttttggtc agctacagac agtttaaagt acgtcaagct gagtgtacaa agactgcacg
     1261 aattcaggcc gcattacccg cggctaaacc agcagtgccg gctcctgcac cagtggcagc
     1321 gcccccgccg ccgccgccgc ctccgccagg tgcgcatctc tatgaagaac ttggagacag
     1381 ctcaattctt ttccttctct accattttca acaaagcagg ggaaataact cagtctcaga
     1441 agacaggaaa catcaacaag ttgtgatgcc cttttcttcc aatactattg aggctcacaa
     1501 gtcagctcat gtagacggat cacttaagag caacaaactg aagtctgcaa gaaaattcac
     1561 atttctatct gatgaggatg acttaagtgc ccataatccc ctttataagg aaaacataag
     1621 tcaagtatca acaaattcag acatttcaca gagaacagat tttgtagacc cattttcacc
     1681 caaaatacaa gccaagagta agtctctgag gggcccaaga gaaaagattc agaggctgtg
     1741 gagtcagtca gtcagcttac ccaggaggct gatgaggaaa gttccaaata gaccagagat
     1801 catagatctg cagcagtggc aaggcaccag gcagaaagct gaaaatgaaa acactggaat
     1861 ctgtacaaac aaaagaggta gcagcaatcc attgcttaca actgaagagg caaatttgac
     1921 agagaaagag gaaataaggc aaggtgaaac actgatgata gaaggaacag aacagttgaa
     1981 atctctctct tcagactctt cattttgctt tcccaggcct cacttctcat tctccacttt
     2041 gccaactgtt tcaagaactg tggaactcaa atcagaacct aatgtcatca gttctcctgc
     2101 tgagtgttcc ttggaacttt ctccttcaag gccttgtgtt ttacattctt cactctctag
     2161 gagagagaca cctatttgta tgttacctat tgaaaccgaa agaaatattt ttgaaaattt
     2221 tgcccatcca ccaaacatct ctccttctgc ctgtcccctt ccccctcctc ctcctatttc
     2281 tcctccttct cctcctcctg ctcctgctcc tcttgctcct cctcctgaca tttctccttt
     2341 ttctcttttt tgtcctcctc cctctcctcc ttctatccct cttcctcttc ctcctcctac
     2401 attttttcca ctttccgttt caacgtctgg tcccccaaca ccacctcttc tacctccatt
     2461 tccaactcct cttcctccac cacctccttc tattccttgc cctccacctc cttcagcttc
     2521 atttctgtcc acagagtgtg tctgtataac aggtgttaaa tgcacgacca acttgatgcc
     2581 tgccgagaaa attaagtcct ctatgacaca gctatcaaca acgacagtgt gtaaaacaga
     2641 ccctcagaga gaaccaaaag gcatcctcag acacgttaaa aacttagcag aacttgaaaa
     2701 atcagtagct aacatgtaca gtcaaataga aaaaaactat ctacgcacaa atgtttcaga
     2761 acttcaaact atgtgccctt cagaagtaac aaatatggaa atcacatctg aacaaaacaa
     2821 ggggagtttg aacaatattg tcgagggaac tgaaaaacaa tctcacagtc aatctacttc
     2881 actgtaatgt tgcttttctt attttagtcg ggcaaacctc ttgttgatca tagtcttcaa
     2941 gttgaacatc aaatttgaac gtcaaagaag actctattat tttaccccaa attcaatgaa
     3001 atgcagtttt ttttctcgtt tttaatttaa aaagatatta acctcatcac tactaactca
     3061 ctcatataat agatttacct tactttttaa aaactacaaa gtagcataat ttgttctaca
     3121 tttatttgaa aagtaagtaa ttttaatctc ttttttagtg ggaatatgtg ggcatgaaaa
     3181 ttagataccc aacttaaacc aaaggcatgt ctatcatgtg gatgcagtaa catttacatt
     3241 tagtttttga tcgtagtttt atatgaatgt tccaagaaaa aagcagactg ttacaaataa
     3301 gttaaaactg atatgattga taggttctgt tttttcttga agcctatgta tttggtaaga
     3361 agaaatacta ccgaagtaaa atataatgta cctagattgt aggagatgac agacataagg
     3421 tatttcaaaa taaatctcag gtgctataac atgtagtcat ctgttttct
//