LOCUS AY354498 2109 bp mRNA linear HUM 26-JUL-2016
DEFINITION Homo sapiens protocadherin protein (PCDHJ) mRNA, partial cds.
ACCESSION AY354498
VERSION AY354498.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2109)
AUTHORS Hong,J.C., Ivanov,N.V., Hodor,P., Xia,M., Wei,N., Blevins,R.,
Gerhold,D., Borodovsky,M. and Liu,Y.
TITLE Identification of new human cadherin genes using a combination of
protein motif search and gene finding methods
JOURNAL J. Mol. Biol. 337 (2), 307-317 (2004)
PUBMED 15003449
REFERENCE 2 (bases 1 to 2109)
AUTHORS Hoeng,J.C., Ivanov,N.V., Liu,Y. and Borodovsky,M.
TITLE Direct Submission
JOURNAL Submitted (29-JUL-2003) School of Biology, Georgia Institute of
Technology, 310 Ferst Drive, Atlanta, GA 30332, USA
FEATURES Location/Qualifiers
source 1..2109
/db_xref="H-InvDB:HIT000252107"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="4"
/map="4q31.3"
gene <1..2109
/gene="PCDHJ"
CDS <1..2109
/gene="PCDHJ"
/note="glycoprotein involved in Ca2+-mediated cell-cell
adhesion; cadherin domains occur as repeats in the
extracellular regions which are thought to mediate
cell-cell contact when bound to calcium"
/codon_start=1
/product="protocadherin protein"
/protein_id="AAR10444.1"
/translation="MGEGRQQRRAPVGKLLLLPGRRDTPHGRSGSSGARTQRSLLWLL
VHVWLWAASGSSAQLFNLTLSVDEGLPPDTLVGDIRAGLPAAQQQEGSGFFLSEDSDD
SPLLDDFHVHPDTGIIRTARRLDRERRDHYSFVAATLLGAVVQVEIRVNDVNDHSPRF
PLDSLQLDVSELSPPGTAFRLPVAHDPDAGLFSTQGYTLVQPSDLPKDPAGPFFQLRY
RTPGPLPSPLLPGSSSPLEPLDLVLLRRLDREEAAAHRLQIEAWDGGRPRRTGLLSVE
LRVLDENDNPPVFEQDEYRAAVREDAQPGAEVCRVRATDRDLGPNGFVRYSVRARQVP
GAGSGGGALGDAAYFAVEELSGVVRVWRPLDREAQAWHQLVVEARDGGAEPEVATVRV
SIAVLDVNDNRPAIHVLFLTEGGVARVSEGARPGDYVARVSVSDADGDWEKEDEATGE
LGVGLGDGSISLSLEGGEGDFALLPGGPPGVFFLCVEGPLDRESRDLYELLLVATDAG
SPPLSTEETLLLRVADLNDQPPLFSQQHYKASVSEAAAPGTVVMWVSASDADEAGSDH
AWLRYTVVQLSAPCNLGSLQSKMVHTAECGPSFAIDSESGAISTIRTLDREVQEAVEL
KVVAQDLGEPPLSATCLVSITVDDVNDNEPIFWRQVYNATIAEHAPVGHCFLQLISAQ
VAFVKIKQKQKEIQEKQNLA"
misc_feature 235..474
/gene="PCDHJ"
/note="CA; Region: cadherin domain"
misc_feature 544..861
/gene="PCDHJ"
/note="CA; Region: cadherin domain"
misc_feature 931..1212
/gene="PCDHJ"
/note="CA; Region: cadherin domain"
misc_feature 1294..1590
/gene="PCDHJ"
/note="CA; Region: cadherin domain"
misc_feature 1660..1962
/gene="PCDHJ"
/note="CA; Region: cadherin domain"
BASE COUNT 364 a 679 c 695 g 371 t
ORIGIN
1 atgggcgaag ggcgtcagca gcggcgggct ccggtcggga agctccttct gctccccggg
61 aggagagata caccccatgg gcggtcaggc agcagcggcg ccaggacgca gcgctccctg
121 ctctggctct tggtgcacgt gtggctgtgg gcggcctcgg gctcctctgc ccagttgttc
181 aacctcaccc tttccgtaga tgaggggctt cccccggaca cgctggtagg tgacatccgc
241 gccgggctgc cggccgcgca gcagcaggag gggagcggct tctttctgtc ggaggactcc
301 gatgactccc cgctgctgga cgacttccac gtgcacccgg acaccggcat catccgcact
361 gcgcggcgcc tggaccgcga gcggcgggac cactacagct tcgtcgccgc cacgctgctg
421 ggcgctgtgg tgcaggtgga gattcgcgtc aacgacgtga atgaccactc gccccgcttt
481 cccctcgact ccctgcaact cgacgtctcc gagctcagcc cgccagggac cgccttccgc
541 ctgccagttg cccacgatcc ggacgccgga ctgttcagca ctcagggcta caccctggtg
601 caaccgtccg acctgcccaa ggaccccgca ggcccgttct tccagttgcg ctaccggact
661 ccggggccac taccgtcacc gcttttgcca ggctcctcgt cacccctgga gcctctagat
721 ctggtgctgc tgcggcgctt ggaccgagag gaggcggcgg cgcaccggct gcagatcgag
781 gcatgggacg gcggccgacc ccggcgcacc ggcctcctga gcgtggagct gcgcgtgctg
841 gatgagaacg acaacccgcc ggtctttgag caggacgagt accgcgccgc ggtgcgcgag
901 gacgcccagc cgggcgccga ggtctgtcgc gtgcgcgcca ccgaccgcga cctggggccc
961 aatggcttcg tgcgctacag cgtccgcgcc cggcaagtgc ctggggcggg tagcggcggc
1021 ggggcactgg gcgacgcggc ctacttcgcg gtggaggagc tgagcggcgt ggtgcgagtg
1081 tggagacctc tggaccgcga ggcacaggcc tggcaccagt tggtggtgga ggcccgcgat
1141 ggaggcgccg agcctgaggt tgccacggtg cgcgtgtcca tcgccgtgct ggacgtgaat
1201 gacaaccggc cagcaattca cgtgctcttt ctcacagagg gaggcgtcgc ccgtgtctct
1261 gaaggcgccc gaccgggcga ctacgtggct cgcgtctcgg tgtctgacgc ggacggtgac
1321 tgggagaagg aagatgaggc cacaggggag cttggtgtgg gtcttggaga cgggagcatc
1381 tctctgtcct tggaaggcgg agagggagac ttcgcgttgc tacccggcgg ccccccaggg
1441 gtatttttcc tttgcgtgga ggggcccctg gacagagaga gccgcgatct gtatgagtta
1501 ctactggtgg ccacggacgc ggggtccccg ccgctgagca cggaggagac gctgctactc
1561 cgggtcgctg acctcaatga ccaaccacct ctcttcagcc aacagcatta caaggcctca
1621 gtgtccgagg ccgcggcccc tggcactgta gtcatgtggg tcagcgcctc cgatgccgac
1681 gaggcaggca gtgatcacgc ctggctgcgc tacactgtag tccaactctc ggctccctgc
1741 aatctcggct ccctgcaatc aaagatggtc cacaccgcag agtgtggacc atcttttgcc
1801 attgattccg aaagcggtgc gatcagcact atccggactc tagaccgaga ggtccaggag
1861 gcggtggagc tgaaagtggt ggcccaggac ctcggagagc ccccactctc tgccacctgc
1921 ctggtgagca tcaccgtaga tgatgtgaat gacaatgagc ccatcttctg gaggcaggtg
1981 tacaatgcca ccattgcaga gcatgccccg gttggacact gctttctgca gcttatatct
2041 gctcaagttg cctttgtcaa aatcaaacaa aaacaaaagg aaatacagga aaaacaaaat
2101 cttgcctag
//