LOCUS AY193834 5086 bp DNA linear HUM 21-DEC-2002
DEFINITION Homo sapiens CCAAT/enhancer binding protein (C/EBP), beta (CEBPB)
gene, complete cds.
ACCESSION AY193834
VERSION AY193834.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5086)
AUTHORS Rieder,M.J., Armel,T.Z., Carrington,D.P., Ozuna,M., Kuldanek,S.A.,
Rajkumar,N., Toth,E.J., Yi,Q. and Nickerson,D.A.
TITLE Direct Submission
JOURNAL Submitted (09-DEC-2002) Genome Sciences, University of Washington,
1705 NE Pacific, Seattle, WA 98195, USA
COMMENT To cite this work please use: SeattleSNPs. NHLBI HL66682 Program
for Genomic Applications, UW-FHCRC, Seattle, WA (URL:
http://pga.gs.washington.edu).
FEATURES Location/Qualifiers
source 1..5086
/organism="Homo sapiens"
/mol_type="genomic DNA"
/db_xref="taxon:9606"
variation 40
/frequency="0.01"
/replace="t"
repeat_region 137..195
/rpt_family="MIR"
/rpt_type=dispersed
variation 220
/frequency="0.13"
/replace="g"
variation 586
/frequency="0.24"
/replace="t"
variation 587
/frequency="0.26"
/replace="t"
misc_feature 934..1079
/note="Region not scanned for variation"
gene <1203..>2240
/gene="CEBPB"
mRNA <1203..>2240
/gene="CEBPB"
/product="CCAAT/enhancer binding protein (C/EBP), beta"
CDS 1203..2240
/gene="CEBPB"
/codon_start=1
/product="CCAAT/enhancer binding protein (C/EBP), beta"
/protein_id="AAN86350.1"
/translation="MQRLVAWDPACLPLPPPPPAFKSMEVANFYYEADCLAAAYGGKA
APAAPPAARPGPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPP
APAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPL
HPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPS
GSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKI
RRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL
PEPLLASSGHC"
variation 1643
/gene="CEBPB"
/frequency="0.31"
/replace="t"
variation 1785
/gene="CEBPB"
/frequency="0.01"
/replace="a"
misc_feature 2011..2442
/note="Region not scanned for variation"
variation 2876
/frequency="0.27"
/replace="t"
variation 2884
/frequency="0.73"
/replace=""
variation 2948
/frequency="0.01"
/replace="a"
variation 3077
/frequency="0.96"
/replace=""
variation 3259
/frequency="0.02"
/replace="a"
variation 3693
/frequency="0.28"
/replace="t"
repeat_region 3733..3827
/rpt_family="MIR"
/rpt_type=dispersed
repeat_region 3894..4010
/rpt_family="MIR"
/rpt_type=dispersed
variation 4446
/frequency="0.28"
/replace="c"
variation 4962
/frequency="0.03"
/replace="c"
variation 5010
/frequency="0.01"
/replace="g"
BASE COUNT 881 a 1561 c 1623 g 1021 t
ORIGIN
1 ctctctctgg gcctccactg gcacaatccg tgggggtccc gttctctctg atgtgcagcc
61 cacaacgtaa gccttaggtt tgggagtctg gtgggaacaa tgccaccacc actgacagta
121 gcgacaccct tcatggattg cagctgggag aagtgaagtg actcacccaa ggtcacacag
181 tgtggcaggg ccgagcaccc cccgcccctg ccccatccca gggcccaggt cgggtggcgc
241 agcgcggggc aagagaagac ccgggcgtgt ccaagcctcg agcaggcggc aggtgtggtg
301 ggcggggcta ggggcggggc tccgtggacc agggtccagc cccaagcggg gcgcgatcct
361 gcccggtcgc gccgaccccc ggggtcctca tattgtctgt ggcttaagag gggagtcgtc
421 acaggcgtca agtcttcttt ctaaagccgg ggacctgggg aggaggtggg agtttacggg
481 aggaagggcc acggagatgg gtcgcttctc ctggagctag agctgcgggc tggggtctcc
541 agggttcggc ccggggagcc gaccctggtc ggccgtcggg gctctgctcg gccctcctga
601 aacctccgcc tcctccagca gggggcgggc cggggccgcg tctcgggggg aaggcgatca
661 ggtcgccccc tcctccgatt cccccgcctt ccaggacagc ctccagccca gaggggcggt
721 ccgggggcgg ggtcgcaccg ccccctctcg ctcccaatcc cggggcggcc gggcgggggt
781 gggcaggggg cgtgaggccg cccctgcgtc ccgggggccc cccgaaaacg cgctccgggt
841 gcccggtccc tccgctgcgc cctgccgccg tcctcccggg ggtctcgggc ggccgcggcc
901 gtgtccttcg cgtcccggcg gcgcggcggg aggggccggc gtgacgcagc ggttgctacg
961 ggccgccctt ataaataacc gggctcagga gaaactttag cgagtcagag ccgcgcacgg
1021 gactgggaag gggacccacc cgagggtcca gccaccagcc ccctcactaa tagcggccac
1081 cccggcagcg gcggcagcag cagcagcgac gcagcggcga cagctcagag cagggaggcc
1141 gcgccacctg cgggccggcc ggagcgggca gccccaggcc ccctccccgg gcacccgcgt
1201 tcatgcaacg cctggtggcc tgggacccag catgtctccc cctgccgccg ccgccgcctg
1261 cctttaaatc catggaagtg gccaacttct actacgaggc ggactgcttg gctgctgcgt
1321 acggcggcaa ggcggccccc gcggcgcccc ccgcggccag acccgggccg cgcccccccg
1381 ccggcgagct gggcagcatc ggcgaccacg agcgcgccat cgacttcagc ccgtacctgg
1441 agccgctggg cgcgccgcag gccccggcgc ccgccacggc cacggacacc ttcgaggcgg
1501 ctccgcccgc gcccgccccc gcgcccgcct cctccgggca gcaccacgac ttcctctccg
1561 acctcttctc cgacgactac gggggcaaga actgcaagaa gccggccgag tacggctacg
1621 tgagcctggg gcgcctgggg gccgccaagg gcgcgctgca ccccggctgc ttcgcgcccc
1681 tgcacccacc gcccccgccg ccgccgccgc ccgccgagct caaggcggag ccgggcttcg
1741 agcccgcgga ctgcaagcgg aaggaggagg ccggggcgcc gggcggcggc gcaggcatgg
1801 cggcgggctt cccgtacgcg ctgcgcgctt acctcggcta ccaggcggtg ccgagcggca
1861 gcagcgggag cctctccacg tcctcctcgt ccagcccgcc cggcacgccg agccccgctg
1921 acgccaaggc gcccccgacc gcctgctacg cgggggccgc gccggcgccc tcgcaggtca
1981 agagcaaggc caagaagacc gtggacaagc acagcgacga gtacaagatc cggcgcgagc
2041 gcaacaacat cgccgtgcgc aagagccgcg acaaggccaa gatgcgcaac ctggagacgc
2101 agcacaaggt cctggagctc acggccgaga acgagcggct gcagaagaag gtggagcagc
2161 tgtcgcgcga gctcagcacc ctgcggaact tgttcaagca gctgcccgag cccctgctcg
2221 cctcctccgg ccactgctag cgcggccccc gcgcgcgtcc ccctgccggc cggggctgag
2281 actccgggga gcgcccgcgc ccgcgccctc gcccccgccc ccggcggcgc cggcaaaact
2341 ttggcactgg ggcacttggc agcgcgggga gcccgtcggt aattttaata ttttattata
2401 tatatatatc tatatttttg tccaaaccaa ccgcacatgc agatggggct cccgcccgtg
2461 gtgttattta aagaagaaac gtctatgtgt acagatgaat gataaactct ctgcttctcc
2521 ctctgcccct ctccaggcgc cggcgggcgg gccggtttcg aagttgatgc aatcggttta
2581 aacatggctg aacgcgtgtg tacacgggac tgacgcaacc cacgtgtaac tgtcagccgg
2641 gccctgagta atcgcttaaa gatgttccta cgggcttgtt gctgttgatg ttttgttttg
2701 ttttgttttt tggtcttttt ttgtattata aaaaataatc tatttctatg agaaaagagg
2761 cgtctgtata ttttgggaat cttttccgtt tcaagcatta agaacacttt taataaactt
2821 ttttttgaga atggttacaa agccttttgg gggcagtaat tggcttttgt tttttatttt
2881 ttttacttta ttttggattt gtaggatttt gtttttgcgt ttctggtgtg tagggggttg
2941 tgtgtggggg gctgctgtta tttttggagg ttttggtggt tgggtggggg tgttgcagct
3001 ggtttttctg cctcctctgc tactccccct cccacacaca cagggtctgc ttgagatggg
3061 gttccagccc cggggggaaa ggggagaaga gtaatgggtc aggcattcag gctgactcag
3121 agcccctagg cgccgggacg ggtggctggg aaccctgctt gagaagagat tccggagcct
3181 ctggctggtc ccgagtgtca ggcttgggtt tggaagggct gggaggtctg tgacccctgc
3241 cctgtgtttg gggactaggt aggcaggcct gtgactgtag gaggaggggg ttcaggtctt
3301 ggtcctgctg agcccgagtc agggcagatg cttttggtca gtgtagtggg gtgggttgtt
3361 taaaacacag tttgtgtata catgtgtatt ttaaagaggg gagcctgggt gtgtgggcga
3421 gtctgtgttt gtgtgtccct ggccagcagg aggggagagg ccaggccagg tggagagagg
3481 tgggggaggg gttcccacac tttgattacc tttcctgagg atgggaggct catcacttgc
3541 tctctttgcc cagacttgga cactgagccc acctcacctg cctgctcaag gtggctgagc
3601 ccaggcacaa acgtggggct gctagccctg attccctggg acaggctcct cttccctgcc
3661 cactgatccc tttgcccctt ccggcttctc accgcacccc ctactcccat ccagccctgg
3721 atggcattcc tgagagttga ggatgtagat ggatgtgagt ggatacatgt acagcgtccc
3781 acagtgcctg gcacgcaaga agtgttatat aagcgcttgc tcttgttatt attttttgct
3841 gggaagctgc tggcatttgg caccccagtc tccagtgcag cgccagtgtg gccagtactt
3901 gccaggggcc ggcatctggt aaacactgga cctgccccat cccatttaga cctcacaata
3961 acctttggga aggtggggat tgttatgacg cctgttttta gaggtgggga gcagctttgg
4021 gctgtccgat ccctatgggc aagacactgg ttgggggttg ccctgccctg aggaattcag
4081 gggcagcagg catcgtagcc tggtttgcca aggacctggg gcggtctggg atctcaggag
4141 cagttgctga taccgtggtt cgcgaatggg aaatgctttg cccctccttt tccttttggg
4201 ggcctggttg tgctttccct gtgggagcct gggatgtggg gaacagacag cgacactcat
4261 cccccaccgc cacaaagcgg aggattccta taagctccac ctccctaatg ccagtgtctc
4321 ctgatggtgg ctcgagggct atgcagattg ctggacacag ataacctcac ttcaacctgg
4381 gacctgcagc gtggccctga ccacgtcccc tcccagccct gggcaactgg acaactggcc
4441 gggcatgcct tcaaagcctc gaagtcagtt cagtcccaag ccccactggt ctcgatggtt
4501 tctgtcagta gcagcgacag caatgtgggc ttgacctcaa ggatttactt gctgaaggca
4561 gaggctgagg ggctggacct agggaaggag ggaggtggag agggtcgaaa ttgaggaaca
4621 aatctcaaat ccctgctccc tcctttgtca ccaagagttg gctggtggcc actgctcacc
4681 caaatgaggt gagagggaag cagcctggcc agacggtgcc cctcttccgc ccccgtctgc
4741 cccacagctt cgcttctgtt tccccagtgc tgtcctggaa ccagcgttga gtcagttctt
4801 cacacactca catcttgctc tcatccacag taccccacag aaggtgctag acccatttct
4861 aaaagcacac attgaggtcc acagaagtga ggtttgtgct caaggtgggc taggtggagc
4921 aggttacaaa accatccgac tcccaagtct atggggaaag tttggggctg ggagcctggt
4981 ttgtaatccc agttcctgtt taaaatccca ggctcttctt ggagggctcc ttgcctgacc
5041 tcaagttcag gcactccaag ccccagaact gcaaacatca gtttca
//