LOCUS AY190519 5079 bp mRNA linear HUM 23-APR-2003
DEFINITION Homo sapiens Rab3A-interacting molecule (RIM1) mRNA, complete cds,
alternatively spliced.
ACCESSION AY190519
VERSION AY190519.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5079)
AUTHORS Johnson,S., Halford,S., Morris,A.G., Patel,R.J., Wilkie,S.E.,
Hardcastle,A.J., Moore,A.T., Zhang,K. and Hunt,D.M.
TITLE Genomic organisation and alternative splicing of human RIM1, a gene
implicated in autosomal dominant cone-rod dystrophy (CORD7)
JOURNAL Genomics 81 (3), 304-314 (2003)
PUBMED 12659814
REFERENCE 2 (bases 1 to 5079)
AUTHORS Johnson,S., Halford,S. and Hunt,D.M.
TITLE Direct Submission
JOURNAL Submitted (04-DEC-2002) Molecular Genetics, Institute of
Ophthalmology, Bath Street, London EC1V 9EL, UK
FEATURES Location/Qualifiers
source 1..5079
/db_xref="H-InvDB:HIT000250949"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
gene 1..5079
/gene="RIM1"
CDS 1..5079
/gene="RIM1"
/note="alternatively spliced"
/codon_start=1
/product="Rab3A-interacting molecule"
/protein_id="AAO38848.1"
/translation="MSSAVGPRGPRPPTVPPPMQELPDLSHLTEEERNIIMAVMDRQK
EEEEKEEAMLKCVVRDMAKPAACKTPRNAENQPHQPSPRLHQQFESYKEQVRKIGEEA
RRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSNNEDKVVMW
VCNLCRKQQEILTKSGAWFFGSGPQQTSQDGTLSDTATGAGSEVPREKKARLQERSRS
QTPLSTAAASSQDAAPPSAPPDRSKGAEPSQQALGPEQKQASSRSRSEPPRERKKTPG
LSEQNGKGALKSERKRVPKTSAQPVEGAVEERERKERRESRRLEKGRSQDYPDTPEKR
DEGKAADEEKQRKEEDYQTRYRSDPNLARYPVKPPPEEQQMRMHARVSRARHERRHSD
VALPRTEAGAALPEGKAGKRAPAAARASPPDSPRAYSAERTAETRAPGAKQLTNHSPP
APRHGPVPAEAPELKAQEPLRKQSRLDPSSAVLMRKAKREKVETMLRNDSLSSDQSES
VRPSPPKPHRSKRGGKKRQMSVSSSEEEGVSTPEYTSCEDVELESESVSEKGDLDYYW
LDPATWHSRETSPISSHPVTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGK
MTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSE
PQVEIIVSRPIGDIPRIPESSHPPLESSSSSFESQKMERPSISVISPTSPGALKDAPQ
VLPGQLSVKLWYDKVGHQLIVNVLQATDLPARVDGRPRNPYVKMYFLPDRSDKSKRRT
KTVKKILEPKWNQTFVYSHVHRRDFRERMLEITVWDQPRVQEEESEFLGEILIELETA
LLDDEPHWYKLQTHDESSLPLPQPSPFMPRRHIHGESSSKKLQRSQRISDSDISDYEV
DDGIGVVPPVGYRSSARESKSTTLTVPEQQRTTHHRSRSVSPHRGNDQGKPRSRLPNV
PLQRSLDEIHPTRRSRSPTRHHDASRSPVDHRTRDVDSQYLSEQDSELLMLPRAKRGR
SAECLHTTRHLVRHYKTLPPKMPLLQSSSHWNIYSSILPAHTKTKSVTRQDISLHHEC
FNSTVLRFTDEILVSELQPFLDRARSASTNCLRPDTSLHSPERERGRWSPSLDRRRPP
SPRIQIQHASPENDRHSRKSERSSIQKQTRKGTASDAERVLPTCLSRRGHAAPRATDQ
PVIRGKHPARSRSSEHSSIRTLCSMHHLVPGGSAPPSPLLTRMHRQRSPTQSPPADTS
FSSRRGRQLPQVPVRSGSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDREQYS
KYNIHKDQYRSCDNVSAKSSDSDVSDVSAISRTSSASRLSSTSFMSEQSERPRGRISS
FTPKMQGRRMGTSGRSIMKSTSVSGEMYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSA
KVVAIVSRRSRSTSQLSQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSI
NSYSSEGNLIFPGVRLGADSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQ
LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF
DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPT
LTPLTRRASQSSLESSTGPPCIRS"
BASE COUNT 1491 a 1248 c 1337 g 1003 t
ORIGIN
1 atgtcctcgg ccgtggggcc ccgcggtcct cgcccaccca cggtgcctcc ccccatgcaa
61 gagctgcccg acctgagcca cctgaccgaa gaggagagga acattatcat ggcagtgatg
121 gaccggcaga aggaagagga ggaaaaagaa gaagccatgc tcaagtgtgt tgtcagggac
181 atggcgaagc ctgctgcctg caaaacacca agaaatgctg aaaaccagcc ccaccaacct
241 tcaccgagat tgcatcaaca gtttgaaagc tataaggaac aagtgagaaa aataggggaa
301 gaagcgcggc gttaccaggg cgagcacaaa gacgatgctc cgacttgtgg aatctgtcat
361 aaaacaaagt ttgctgatgg gtgcggtcat ctctgctcct attgtcgcac taagttctgt
421 gcgcgctgcg gaggccgcgt gtctctacgg tcaaacaacg aggacaaagt ggttatgtgg
481 gtatgcaatt tatgtcgaaa gcaacaagaa atcttaacca aatctggggc atggttcttt
541 ggaagtggcc ctcagcagac aagtcaggat ggaaccctga gtgatacagc tacaggtgct
601 ggctctgagg taccaagaga aaagaaagca cgactccaag agcgatcgcg gtctcagaca
661 cccctaagca cagcagctgc ctcctcccag gatgctgctc ctcccagcgc accaccagac
721 aggagcaaag gggctgagcc ctcgcagcaa gccttggggc ctgaacagaa gcaggcttca
781 tccaggtcta gaagtgaacc tcctagagag agaaagaaga ccccagggct ttccgagcag
841 aatggcaaag gagccctgaa gagcgagcgg aaacgcgtgc caaagacctc agcgcagccc
901 gtggaggggg ccgtcgaaga acgggagcgc aaagaaaggc gggaaagccg aaggcttgag
961 aaagggcgat cacaggatta cccagacacg ccggaaaaac gggatgaggg caaagcggcg
1021 gatgaggaaa agcaaagaaa agaggaggat tatcagacca ggtaccgcag cgacccgaac
1081 ctggctcggt acccggtgaa accgccgcct gaggagcagc agatgcgcat gcacgcccgg
1141 gtgtcccgcg ccaggcacga gcggcgccac agcgacgtgg cgctcccgcg caccgaggcg
1201 ggcgcggcgc tgccggaggg caaggccggc aaacgcgcgc cggcggcagc cagggcctcg
1261 ccgccggact cgccgcgggc ttactcggct gagagaactg cggagaccag ggcgccgggc
1321 gccaagcagc taacgaacca cagcccgccg gcgcccagac atgggccggt tcccgcagaa
1381 gccccggagc tcaaagccca ggagcccctc aggaagcaga gccgcctgga ccccagctcg
1441 gcggtcctca tgcggaaggc caagcgcgag aaggtggaga ccatgctgcg gaacgactct
1501 ttgagctcag accagtccga gtcggtgcgg ccgtccccgc ccaagccgca ccggtccaag
1561 agaggcggca agaagcggca gatgtcggtg agcagctctg aggaggaggg cgtgtcgacg
1621 cccgagtaca ccagctgcga ggacgtggag ctggagagcg agagcgtcag cgagaaaggt
1681 gatttggatt attactggtt ggatcctgcc acgtggcaca gccgggagac atcacctatt
1741 agttcgcatc ctgtaacgtg gcaaccatct aaagaggggg accgattaat tggacgtgtt
1801 attcttaaca agagaacaac catgcccaaa gactcaggtg cattgctggg tctgaaagtt
1861 gttggaggaa aaatgactga cttaggacga cttggtgctt tcatcaccaa agtaaagaag
1921 ggtagcctag cagatgtagt tggacaccta agagcagggg atgaagttct agaatggaat
1981 ggtaaacccc tgccgggagc tacaaatgaa gaagtttaca acattatttt agaatcaaaa
2041 tcagaacctc aagttgaaat tattgtttca aggcctattg gtgacattcc ccggattcct
2101 gagagctccc accctccact ggagtccagt tcaagttcct ttgaatctca gaagatggaa
2161 aggccttcca tttctgttat ttctccaaca agtcctggag ctctaaaaga tgccccacaa
2221 gtcttaccag ggcaactttc tgtgaagttg tggtatgata aagtgggaca ccagctgatt
2281 gtaaatgttc tgcaagcaac agatctacct gctagagtag atggacgtcc tcgaaatccc
2341 tatgtaaaaa tgtattttct tccagataga agtgataaaa gtaaaaggag gaccaaaaca
2401 gtaaagaaaa tactagaacc aaaatggaat caaacttttg tctattcaca tgtacatcgt
2461 agagatttta gagaacgaat gttagaaata actgtgtggg accaaccaag agtgcaagaa
2521 gaagaaagtg aatttcttgg agagatcctc atagaattgg agacagcgct tttagatgat
2581 gaaccgcatt ggtataaact tcagacacat gatgagtctt cactacctct gcctcagcca
2641 tcacctttca tgccaaggcg acatattcat ggagaaagct ctagcaaaaa gctacaaaga
2701 tctcagcgaa tcagtgatag tgacatctca gattatgagg ttgatgatgg tattggcgta
2761 gttcctccag taggctatag gtctagtgct agagaaagta aatctacaac attaactgtg
2821 ccagaacagc aaagaacaac tcatcaccgc tcacgttcag tatctcctca tcgcggcaat
2881 gatcagggaa agccgcgttc acgtttacca aatgtgccat tacagaggag tttagatgaa
2941 attcatccaa caagaaggtc acgttctcca accagacacc atgatgcctc ccgaagtcca
3001 gttgatcata gaaccagaga tgtggatagt cagtatttat cagaacaaga cagtgagctt
3061 cttatgctgc ccagagcaaa acgaggacga agtgcagaat gcctacatac taccagacat
3121 cttgttaggc actataaaac attacctccc aagatgcctt tattacagag cagttctcac
3181 tggaatattt acagctcaat tctgcctgca catactaaga ccaaatcagt gactagacag
3241 gacatttccc ttcatcatga atgctttaac tcaacagtat tgagatttac tgatgaaata
3301 ctggttagtg aactgcagcc ctttcttgac agggctagga gtgctagtac caactgcttg
3361 agaccagata ctagtttgca ttcaccagaa cgagaaaggg gtagatggtc cccctcccta
3421 gataggagac gacctcctag tcccaggatt caaatccagc atgcgtctcc ggagaatgac
3481 aggcactcca gaaagtctga aagatctagc atccaaaaac agactaggaa aggcactgcc
3541 tctgatgcag aaagggttct cccaacatgt ctttctagaa ggggacacgc agccccaaga
3601 gcaactgatc agccagtcat taggggaaaa catcctgctc gctcaaggtc gagtgagcac
3661 tctagtatca gaacactgtg ttctatgcac caccttgtcc ctggagggtc ggcgccacct
3721 tctccgcttc tgacaagaat gcaccgacag agaagtccaa cacaatctcc tccagcagac
3781 acatcgttca gcagtcgcag gggaagacag ctcccacaag tgccagtgag aagcggcagt
3841 atagaacaag caagcttagt agtggaggag cgaacaagac agatgaaaat gaaagtgcat
3901 cgatttaagc agacaacagg gtctggttct agtcaagaac ttgatcgcga gcaatattcc
3961 aagtataaca tacataaaga tcagtacaga agctgtgata acgtctctgc caaatcatca
4021 gatagtgatg tcagtgatgt ttccgccatt tcccgaacca gcagtgcctc acgcctcagc
4081 agcacaagct ttatgtcaga gcaatctgag cgccccaggg gtagaatcag ttcatttacc
4141 cccaaaatgc aaggcagacg gatggggact tcaggaagat ccatcatgaa gagcaccagt
4201 gtcagtggag agatgtacac actggagcat aatgacggca gccagtcaga cacagctgtg
4261 ggtacagttg gagcaggtgg aaagaaacgg agatccagcc ttagtgccaa agtggttgcc
4321 atagtgtctc gaaggagtag aagcacatcc cagcttagtc aaacagagtc gggccacaaa
4381 aagttaaaaa gtaccatcca gagaagcaca gaaacaggca tggcagctga aatgagaaag
4441 atggtaaggc agccgagccg agagtctact gatggcagca tcaacagtta cagctctgag
4501 ggcaatttaa tatttcctgg agtgcgactg ggagctgaca gtcaattcag tgattttctt
4561 gatggattgg gaccagccca gcttgttggc cgccaaaccc ttgccacccc tgcaatgggt
4621 gatatacaaa taggaatgga ggacaaaaag ggccaattag aagtggaagt cattagagca
4681 cgaagcctca cacaaaagcc tggttccaaa tctacacctg ctccatatgt caaagtatat
4741 cttttggaaa atggggcctg tatagccaag aagaagacaa gaattgcacg aaaaaccctt
4801 gatcctttgt atcagcagtc tctggttttt gatgaaagtc cacagggtaa agttcttcag
4861 gtgattgtct ggggagacta tggcagaatg gaccacaaat gctttatggg tgtggctcag
4921 atcttgttgg aagaactcga cctgtccagc atggtgatcg gatggtacaa attgttccca
4981 ccgtcctcac tggtggatcc cacactcact cccctcaccc ggcgggcttc ccagtcatct
5041 ctggaaagtt caactgggcc tccctgtatt cgatcatag
//