LOCUS       AY168345                8185 bp    mRNA    linear   HUM 20-MAY-2003
DEFINITION  Homo sapiens retinitis pigmentosa 1-like 1 protein (RP1L1) mRNA,
            RP1L1-5 allele, complete cds.
ACCESSION   AY168345
VERSION     AY168345.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 8185)
  AUTHORS   Bowne,S.J., Daiger,S.P., Malone,K.A., Heckenlively,J.R., Kennan,A.,
            Humphries,P., Hughbanks-Wheaton,D., Birch,D.G., Liu,Q.,
            Pierce,E.A., Zuo,J., Huang,Q., Donovan,D.D. and Sullivan,L.S.
  TITLE     Characterization of RP1L1, a highly polymorphic paralog of the
            retinitis pigmentosa 1 (RP1) gene
  JOURNAL   Mol. Vis. 9, 129-137 (2003)
   PUBMED   12724644
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8185)
  AUTHORS   Bowne,S.J., Daiger,S.P., Malone,K.A. and Sullivan,L.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2002) Human Genetics Center, University of Texas
            Health Science Center Houston, 1200 Herman Pressler, Houston, TX
            77030, USA
FEATURES             Location/Qualifiers
     source          1..8185
                     /db_xref="H-InvDB:HIT000084908"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
     gene            1..8185
                     /gene="RP1L1"
                     /allele="5"
     CDS             231..7625
                     /gene="RP1L1"
                     /allele="5"
                     /codon_start=1
                     /product="retinitis pigmentosa 1-like 1 protein"
                     /protein_id="AAN86963.1"
                     /translation="MNSTPRNAQAPSHRECFLPSVARTPSVTKVTPAKKITFLKRGDP
                     RFAGVRLAVHQRAFKTFSALMDELSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCY
                     LCSDKKPPKTPSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKTPRRILLIKNM
                     DPRLQQTVVLSHRNTRNLAAFLGKASDLLRFPVKQLYTTSGKKVDSLQALLHSPSVLV
                     CAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPE
                     RPGPSNPPVGPAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGE
                     DTLLWSRRMGRASALTAASGEDPVLGEVDPLCCVWEGYPWGFSEPGVWGPRPCRVGCR
                     EVFGRGGQPGPKYEIWTNPLHASQGERVAARKRWGLAQHVRCSGLWGHGTAGRERCSQ
                     DSASPASSTGLPEGSEPESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCID
                     GAGLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQ
                     EASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGAAVTREPLVLGLSCSWDSEGA
                     SSTPSTCTSSQQGQRRHRSRASAMSSPSSPGLGRVAPRGHPRHSHYRKDTHSPLDSSV
                     TKQVPRPPERRRACQDGSVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSSATV
                     TPAVHSDFVSGVSPHNAPSAGWAGDAGSRTCSPAPIPPHTSDSCSKSGAASPGEEARD
                     TPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEAQRGPSPEASWLCGRYCPTP
                     PRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSAS
                     QGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMT
                     YELADETTGAAGGGLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLG
                     SSDTGPQSGEGVPQGAAPEGVSEAPAEAGADREAPAGCRVSLRALPGRVSASTQIMRA
                     LMGSKQGRPSSVPEVSRPMARRLSCSAGALITCLASLQLFEEDLGSPASKVRFKDSPW
                     YQELLSISKDLWPGCDVGEDQLDSGLWELTWSQALPDLGSHAMTENFTPTSSSGVDIS
                     SGSGGSGESSVPCAMDGTLVTQGTELPLKTSNQRPDSRTYESPGDLENQQQCCFPTFL
                     NARACACATNEDEAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEXV
                     QLEXTKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEG
                     LQEEGVQLEETKTEEGLQEEGVQLEGTKETEGEGQQEEEAQLEEIEETGGEGLQEEGV
                     QLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQEDDPVQEE
                     EAGRASASAEPCPAEGTEEPTEPPSHLSETDPSASESQSGSQLEPGLEKPPGATMMGQ
                     EHTQAQPTQGAAERSSSVACSAALDCDPIWVSVLLKKTEKAFLAHLASAVAELRARWG
                     LQDNDLLDQMAAELQQDVAQRLQDSTKRELQKLQGRAGRMVLEPPREALTGELLLQTQ
                     QRRHRLRGLRNLSAFSERTLGLGPLSFTLEDEPALSTALGSQLGEEAEGEEFCPCEAC
                     VRKKVSPMSPKATMGATRGPIKEAFDLQQILQRKRGEHTDGEAAEVXPGKTHTDPTST
                     RTVQGAEGGLGPGLSQGPGVDEGEDGEGSQRLNRDKDPKLGEAEGDAMAQEREGKTHN
                     SETSAGSELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIE
                     APEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPE
                     AEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEEAQEAEG
                     QAQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQ
                     EAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAE
                     GEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQ
                     PESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEKEAQPELEGVEAPE
                     AEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESG
                     GETQGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSS
                     SRASSWGNCWQKDSENDHVLGDTRSPDAKSTGTPHAERKATRMYPESSTSEQEEAPLG
                     SRTPEQGASEGYDLQEDQALGSLAPTEAVGRADGFGQDDLDF"
BASE COUNT         1977 a         2252 c         2772 g         1180 t
ORIGIN      
        1 ctcctggccc aagggactgg ggcctcaggc tctcaggcca aggagagtgg ccccgaggac
       61 tgtccggagg agggtggcca gccctgctgc ccagagggac tgagccactg gcagggaagg
      121 aggcggtgtt ccccctggcc tgactttcct ccaaaggacg tccccctgag gcttaggggc
      181 tgagccatgc ccttgtgctc cctggaggac gcggccagag cccccacacc atgaacagca
      241 cccccaggaa tgcccaggcc ccgagccacc gtgagtgctt cctgccctct gtggctcgca
      301 ccccctcggt caccaaggtc acgccagcca aaaagatcac cttcctcaag cgaggggatc
      361 cacggtttgc tggggtccgc ctggccgttc accagcgcgc ctttaagacc ttcagcgccc
      421 tcatggacga gctctcccag cgcgtgcctc tctcctttgg ggtgcgctct gtcaccacac
      481 cccggggcct gcatagcctc agcgccctgg agcagctgga agatggaggc tgctacctct
      541 gctctgataa gaagcccccc aagaccccca gtggaccagg ccggccacag gagagaaacc
      601 ccactgctca gcagttgcgg gatgtcgaag gccagcgtga agccccaggc acctcctcct
      661 cccggaagag tcttaaaacc ccccggagga tactgctgat taagaacatg gaccctcgcc
      721 tccagcagac agtggttctc agtcacagga atactaggaa cctggccgcc tttctcggca
      781 aagcctcaga tctcctgcgc tttcctgtga agcagttgta cacgaccagc gggaaaaagg
      841 tggactcgct gcaggccctg ctgcacagcc cctctgtgct ggtgtgtgcc gggcatgagg
      901 ccttcagaac cccagccatg aaaaatgcca ggagaagcga ggctgaaact ttatctgggc
      961 tgacttcaag aaacaaaaac gggagctggg ggccaaagac caagccgagt gtgatccatt
     1021 cgcggtctcc gccaggcagc acgccacggc tgccagaaag gcctggtcct agcaaccccc
     1081 cggtgggccc tgctcctggc aggcaccctc aggacacgcc agctcagtcg ggcccgctgg
     1141 tggctggcga tgacatgaag aagaaggtcc gcatgaatga ggacggcagc ctgtccgtgg
     1201 agatgaaagt ccgcttccac ctggtcggcg aggacacgct cctatggtcc cggaggatgg
     1261 gcagggccag cgccctcacg gcagccagtg gggaagaccc cgttctgggg gaggtagacc
     1321 ccctctgctg tgtgtgggag ggctaccctt ggggcttctc agagcctggg gtgtggggac
     1381 cccggccctg cagggtggga tgcagggaag tctttggccg aggcgggcag ccagggccca
     1441 agtatgaaat ctggacgaat cccctgcatg cctcccaggg agagagagtg gcagctcgga
     1501 agaggtgggg actggcccag cacgtccgct gcagtggcct gtggggccac gggactgccg
     1561 ggagggagag atgcagccag gacagtgcca gcccagcctc cagcaccggc ctccccgagg
     1621 gctcggagcc agagtcctcc tgctgcccca ggaccccgga ggacggggtg gacagtgcca
     1681 gcccctctgc ccagataggg gctgagcgga aagctggagg gagcctgggt gaggaccccg
     1741 gcctatgcat agatggagca gggctgggcg gcccagagca aggcggccgc ctgacaccga
     1801 gggcccggag tgaggagggg gcttcttcgg actcgtcagc cagcaccggc tctcatgagg
     1861 gatccagcga atggggtggg cggccccagg gctgtccagg caaggcaagg gccgagacct
     1921 ctcagcagga ggccagcgag ggaggcgacc ccgcttctcc agccctgagt ctttcatctt
     1981 taaggagtga cgacctgcag gcagagacgc aaggacaggg taccgagcag gccacgggag
     2041 cggctgtgac aagggagcct ctggttctgg gcctttcctg ctcctgggac tcggaaggag
     2101 cctcttccac cccttccacc tgcacttcat cccagcaggg gcagagaagg cacagaagcc
     2161 gggccagtgc aatgtcctca cccagcagcc ctggccttgg ccgagtggcc ccgagaggcc
     2221 atcccaggca ttctcactac cgcaaggaca cccacagccc actggactcc tctgtaacca
     2281 agcaagtgcc gaggcctcct gagcggcgaa gggcctgcca ggatggctca gtgccacgat
     2341 attctggaag ctcatcgagc accaggacac aggcctctgg gaacctgaga cctccctcct
     2401 cgggctctct tccttcccag gaccttctgg gaaccagcag tgccactgtc acccctgcag
     2461 tccactcgga ttttgtttct ggagtctccc cgcacaacgc tccctctgcc gggtgggcag
     2521 gggacgcggg gtccaggaca tgctcgccgg cccccatacc tccccacaca tccgactcct
     2581 gctcaaaatc tggggctgcc agcccggggg aagaggccag ggacacgcct cagccctcct
     2641 cacccttggt tctgcaggtt ggacggcctg agcaaggggc ggtgggcccc caccgaagcc
     2701 actgctgctc acagcctggg acgcagccgg cccaagaggc ccagcgggga ccctcccctg
     2761 aggctagctg gctgtgtggc aggtactgtc ccaccccgcc cagggggcgg ccctgccccc
     2821 agaggcgctc ttccagctgt gggagcaccg gcagcagcca ccaaagcact gcccgggggc
     2881 caggtgggag cccgcaggag gggacacgcc agccaggccc cacgccgtcc ccaggcccca
     2941 attcaggggc atcaaggaga agcagtgcca gccagggtgc ggggtctcgg gggctgtccg
     3001 aggagaagac cttgaggagt gggggaggcc cccaggggca ggaggaggcc agtggtgtgt
     3061 cacccagctc tctgccccgc tcgtctccag aggctgtggt ccgcgaatgg ctggacaaca
     3121 ttccagaaga gcccatactc atgacatatg agttggcgga cgagaccaca ggtgcagctg
     3181 ggggtggcct gagaggcccc gaggtggacc ctggggatga ccattctctg gaaggcctgg
     3241 gggagccagc tcaggcggga cagcagtccc tggaagggga ccccggccag gacccagagc
     3301 cagagggagc cctcctgggg agtagtgaca ctggtcccca atcaggagag ggtgtccccc
     3361 aaggggcagc tccagaggga gtttccgagg cccctgcaga ggccggagca gacagagagg
     3421 ccccagcagg ctgcagggtg agcctgcggg cacttcctgg ccgggtgtct gcctccacgc
     3481 agatcatgag ggcgctgatg ggctccaagc agggccggcc cagcagcgtg cccgaagtgt
     3541 ctaggcccat ggccaggagg ctcagctgct cagccggggc cctcattact tgtctggcca
     3601 gtctgcagtt atttgaggaa gaccttgggt ctcctgccag caaagtgagg ttcaaagact
     3661 ccccttggta ccaggagctg ctcagcatct cgaaggacct gtggccagga tgtgacgttg
     3721 gggaagacca gctggactca ggcctctggg agctcacatg gagccaggct ctgccagacc
     3781 ttgggtccca tgccatgacg gagaacttca cgcccacatc ctcctctggt gtggacatca
     3841 gcagcggctc tggaggctca ggggagagta gcgtaccctg tgccatggac ggcaccctgg
     3901 tgacacaggg gacagagctg cccctgaaaa cctccaacca gaggcctgat tcaagaactt
     3961 atgagagccc aggggatctg gaaaaccaac agcagtgttg tttcccaacc ttcttgaacg
     4021 cccgagcctg cgcttgtgcc accaatgagg atgaagcaga aagagacagt gaggagcaga
     4081 gggcgagctc gaacctggag cagttagctg aaaacacagt gcaagaagag gtgcaattag
     4141 aggaaactaa agaaggaaca gaaggagaag ggctgcaaga agaggsggtg cagttagagg
     4201 rractaaaac agaagaaggg ctgcaagaag agggggtgca gttagaggaa actaaaacag
     4261 aagaagggct gcaagaagag ggggtgcagt tagaggaaac taaaacagaa gaagggctgc
     4321 aagaagaggg ggtgcagtta gaggaaacta aaacagaaga agggctgcaa gaagaggggg
     4381 tgcagttaga ggaaactaaa acagaagaag ggctgcaaga agagggggtg cagttagagg
     4441 ggactaaaga aacggaagga gaaggacagc aagaagaaga ggcgcagtta gaggaaattg
     4501 aagaaacagg aggagaaggg ctgcaagaag agggggtgca gttagaggaa gttaaagaag
     4561 ggccagaagg aggactgcaa ggagaggctc ttgaagaggg tctcaaagag gaaggacttc
     4621 cagaagaagg aagcgtccac gggcaggaat tgtcagaggc cagctctccg gatgggaaag
     4681 gctcccagga agatgaccca gtccaggagg aggaagcagg aagagcctct gcctctgcag
     4741 agccgtgccc cgcagagggc acagaggaac ccacagagcc ccctagtcat ctcagcgaga
     4801 cggacccaag tgccagcgag agtcagagtg gctcccagct tgagcctggt ttggaaaagc
     4861 cgcccggagc caccatgatg ggccaagagc acacgcaggc ccaacccacc cagggggctg
     4921 cagagaggag ctcttcggtg gcctgcagcg cggctctgga ctgcgacccc atctgggtgt
     4981 ccgtgttact gaagaagacg gagaaggcct tcctggccca ccttgccagt gcggtggctg
     5041 agctccgagc acgctggggc ctgcaggaca atgatctgct ggaccagatg gcggccgagc
     5101 tgcagcagga cgtggcccaa cgcctccagg acagcaccaa gagagagctc cagaagctcc
     5161 agggccgggc gggtaggatg gtgctggagc ctccaaggga ggccctcacc ggggagctgc
     5221 tcctgcagac ccagcagcgc agacaccgtc tccggggcct gcgaaacctc tcggccttct
     5281 ctgagcggac cctgggcctg gggcccctct ccttcaccct ggaggacgag ccagccctca
     5341 gcacagccct ggggagccag ctgggcgagg aggcggaggg ggaggagttc tgtccctgcg
     5401 aggcctgcgt gaggaagaaa gtgagcccta tgtcccccaa ggccacaatg ggggcaacca
     5461 gaggtcccat caaagaggcc tttgacctgc agcagattct gcagaggaag aggggagaac
     5521 acactgatgg ggaggcagca gaggtggycc ctggcaagac ccacacggac cccacgagca
     5581 ctaggactgt ccagggagct gagggagggc tggggccggg gctgagccag gggcctggag
     5641 tggacgaggg tgaggatggc gaggggagcc agagactcaa cagagacaaa gatcccaaac
     5701 tcggggaggc agagggagat gcaatggctc aggagagaga agggaaaacc cacaacagtg
     5761 aaaccagtgc gggcagtgag ttgggggaag ctgagcagga gggagagggc ataagtgaaa
     5821 ggggagaaac tgggggtcaa ggctctgggc atgaggacaa cttgcagggt gaagctgcgg
     5881 caggaggtga ccaagatcca ggacagagtg atggggccga aggcatagag gccccggagg
     5941 ctgaagggga ggcccagcca gagtcagaag gtgtagaggc cccagaggca gaaggggatg
     6001 cccaggaggc tgaaggggag gcccagccag agtcagaaga tgtagaggcc ccagaggcag
     6061 aaggagaggc ccagccagag tcagaagatg tagagacccc agaggcagaa tgggaggtcc
     6121 agccagagtc agaaggtgca gaagccccgg aggcagaaaa ggaggcccag ccagagacag
     6181 aaagtgtaga ggccctggag actgaagggg aggacgagcc agagtcagaa ggtgcagagg
     6241 cccaagaggc agaagaggag gcccaggagg cagaagggca ggcccagcca gagtcagaag
     6301 ttatagagtc ccaggaggca gaagaggaag cccagccaga gtcagaagat gtagaggccc
     6361 tggaggttga agtggagacc caggaggcag aaggggaggc ccagccagag tcagaagatg
     6421 tagaggcccc agaggctgaa ggggagatgc aagaggcaga agaggaggcc cagccagagt
     6481 cagacggtgt agaggcccag ccaaagtcag aaggtgaaga ggcccaggag gttgaagggg
     6541 agacccagaa gacagaaggg gatgcccagc cagagtcaga cggtgtagag gccccggagg
     6601 cagaagagga ggcacaggag gctgaagggg aggtccagga ggcagaaggg gaggcccacc
     6661 cagagtcaga agatgtagat gcccaggagg cagaagggga ggcccagcca gaatcagaag
     6721 gtgtagaggc cccagaggca gaaggggagg cccagaaggc agaaggtata gaggccccag
     6781 agactgaagg ggaggcccag ccagagtcag aaggtataga ggccccagag gctgaagggg
     6841 aggcccagcc tgagtcagaa ggtgtagagg cccaggatgc agaaggggag gcccagccag
     6901 agtcagaagg tatagaggcc caggaggctg aaaaggaggc ccaaccagag ttagaaggtg
     6961 tagaggcccc agaggcagaa ggggaggccc agccagagtc agaaggtata gaggccccag
     7021 aggcagaagg ggaggcccaa ccagagttag aaggtgtaga ggccccggag gctgaagagg
     7081 aggcccagcc agagccagaa ggcgtagaga ccccggaggc tgaaggggag gcccagccag
     7141 agtcaggagg agaaactcaa ggtgagaaaa aggggagccc tcaggtcagt ctaggagatg
     7201 gccaatctga ggaggcttct gaaagcagca gcccagtccc tgaggacagg cccactccac
     7261 ccccttcccc aggtggagac actccccacc aaaggccagg ctcccaaaca ggcccttcct
     7321 cctccagagc atcctcttgg ggcaactgct ggcagaaaga ctcagaaaat gaccatgtac
     7381 ttggagacac aaggagccct gatgccaagt ccacggggac ccctcatgca gagaggaagg
     7441 ccaccaggat gtacccagaa agttctactt ctgagcaaga agaggcccct ttgggctcaa
     7501 ggactccaga gcagggggcc agtgaaggtt atgacctaca agaggaccag gcactcggaa
     7561 gtctcgcccc cactgaggca gtgggcaggg cagacggctt tggccaagat gacttagatt
     7621 tctagacaag atcaagctag aaaacaatca cgagcttggg agctctgttt ttattcatat
     7681 tttttctaca aaactgagca acgttcagtc cactggagat gtccatagta catggacaaa
     7741 gaccaaggac ttgccaagga cacagcccat gccatgctgt cctgggactc ttaagtccag
     7801 aagtgtcaga gagctctgcg gcccgtccca cacgcagtgt gaagaaaggg ggtgtctgcg
     7861 gatctgcccg gttatcggag gtcagcccgg ctcctattta tttgtctgca gagcccgaaa
     7921 gatggaactg attggaaagg ctccagttta gcttttgttt gtgggtttgt tttctgctag
     7981 caagtgttgc tctctgtctt ttccctgttg atctcctgtt acttttctcc ttggcttctg
     8041 ttggcactca cctcatttga ctttgaggtg ctttttttct agtctggaat atatttgatg
     8101 actctgcaga aatacttggg caaagcaggt aacttcagag tcattggata aagtttgttc
     8161 tcaactccaa aaaaaaaaaa aaaaa
//