LOCUS AY168345 8185 bp mRNA linear HUM 20-MAY-2003 DEFINITION Homo sapiens retinitis pigmentosa 1-like 1 protein (RP1L1) mRNA, RP1L1-5 allele, complete cds. ACCESSION AY168345 VERSION AY168345.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8185) AUTHORS Bowne,S.J., Daiger,S.P., Malone,K.A., Heckenlively,J.R., Kennan,A., Humphries,P., Hughbanks-Wheaton,D., Birch,D.G., Liu,Q., Pierce,E.A., Zuo,J., Huang,Q., Donovan,D.D. and Sullivan,L.S. TITLE Characterization of RP1L1, a highly polymorphic paralog of the retinitis pigmentosa 1 (RP1) gene JOURNAL Mol. Vis. 9, 129-137 (2003) PUBMED 12724644 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 8185) AUTHORS Bowne,S.J., Daiger,S.P., Malone,K.A. and Sullivan,L.S. TITLE Direct Submission JOURNAL Submitted (24-OCT-2002) Human Genetics Center, University of Texas Health Science Center Houston, 1200 Herman Pressler, Houston, TX 77030, USA FEATURES Location/Qualifiers source 1..8185 /db_xref="H-InvDB:HIT000084908" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" gene 1..8185 /gene="RP1L1" /allele="5" CDS 231..7625 /gene="RP1L1" /allele="5" /codon_start=1 /product="retinitis pigmentosa 1-like 1 protein" /protein_id="AAN86963.1" /translation="MNSTPRNAQAPSHRECFLPSVARTPSVTKVTPAKKITFLKRGDP RFAGVRLAVHQRAFKTFSALMDELSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCY LCSDKKPPKTPSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKTPRRILLIKNM DPRLQQTVVLSHRNTRNLAAFLGKASDLLRFPVKQLYTTSGKKVDSLQALLHSPSVLV CAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPE RPGPSNPPVGPAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGE DTLLWSRRMGRASALTAASGEDPVLGEVDPLCCVWEGYPWGFSEPGVWGPRPCRVGCR EVFGRGGQPGPKYEIWTNPLHASQGERVAARKRWGLAQHVRCSGLWGHGTAGRERCSQ DSASPASSTGLPEGSEPESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCID GAGLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQ EASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGAAVTREPLVLGLSCSWDSEGA SSTPSTCTSSQQGQRRHRSRASAMSSPSSPGLGRVAPRGHPRHSHYRKDTHSPLDSSV TKQVPRPPERRRACQDGSVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSSATV TPAVHSDFVSGVSPHNAPSAGWAGDAGSRTCSPAPIPPHTSDSCSKSGAASPGEEARD TPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEAQRGPSPEASWLCGRYCPTP PRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSAS QGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMT YELADETTGAAGGGLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLG SSDTGPQSGEGVPQGAAPEGVSEAPAEAGADREAPAGCRVSLRALPGRVSASTQIMRA LMGSKQGRPSSVPEVSRPMARRLSCSAGALITCLASLQLFEEDLGSPASKVRFKDSPW YQELLSISKDLWPGCDVGEDQLDSGLWELTWSQALPDLGSHAMTENFTPTSSSGVDIS SGSGGSGESSVPCAMDGTLVTQGTELPLKTSNQRPDSRTYESPGDLENQQQCCFPTFL NARACACATNEDEAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEXV QLEXTKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEG LQEEGVQLEETKTEEGLQEEGVQLEGTKETEGEGQQEEEAQLEEIEETGGEGLQEEGV QLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQEDDPVQEE EAGRASASAEPCPAEGTEEPTEPPSHLSETDPSASESQSGSQLEPGLEKPPGATMMGQ EHTQAQPTQGAAERSSSVACSAALDCDPIWVSVLLKKTEKAFLAHLASAVAELRARWG LQDNDLLDQMAAELQQDVAQRLQDSTKRELQKLQGRAGRMVLEPPREALTGELLLQTQ QRRHRLRGLRNLSAFSERTLGLGPLSFTLEDEPALSTALGSQLGEEAEGEEFCPCEAC VRKKVSPMSPKATMGATRGPIKEAFDLQQILQRKRGEHTDGEAAEVXPGKTHTDPTST RTVQGAEGGLGPGLSQGPGVDEGEDGEGSQRLNRDKDPKLGEAEGDAMAQEREGKTHN SETSAGSELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIE APEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPE AEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEEAQEAEG QAQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQ EAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAE GEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQ PESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEKEAQPELEGVEAPE AEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESG GETQGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSS SRASSWGNCWQKDSENDHVLGDTRSPDAKSTGTPHAERKATRMYPESSTSEQEEAPLG SRTPEQGASEGYDLQEDQALGSLAPTEAVGRADGFGQDDLDF" BASE COUNT 1977 a 2252 c 2772 g 1180 t ORIGIN 1 ctcctggccc aagggactgg ggcctcaggc tctcaggcca aggagagtgg ccccgaggac 61 tgtccggagg agggtggcca gccctgctgc ccagagggac tgagccactg gcagggaagg 121 aggcggtgtt ccccctggcc tgactttcct ccaaaggacg tccccctgag gcttaggggc 181 tgagccatgc ccttgtgctc cctggaggac gcggccagag cccccacacc atgaacagca 241 cccccaggaa tgcccaggcc ccgagccacc gtgagtgctt cctgccctct gtggctcgca 301 ccccctcggt caccaaggtc acgccagcca aaaagatcac cttcctcaag cgaggggatc 361 cacggtttgc tggggtccgc ctggccgttc accagcgcgc ctttaagacc ttcagcgccc 421 tcatggacga gctctcccag cgcgtgcctc tctcctttgg ggtgcgctct gtcaccacac 481 cccggggcct gcatagcctc agcgccctgg agcagctgga agatggaggc tgctacctct 541 gctctgataa gaagcccccc aagaccccca gtggaccagg ccggccacag gagagaaacc 601 ccactgctca gcagttgcgg gatgtcgaag gccagcgtga agccccaggc acctcctcct 661 cccggaagag tcttaaaacc ccccggagga tactgctgat taagaacatg gaccctcgcc 721 tccagcagac agtggttctc agtcacagga atactaggaa cctggccgcc tttctcggca 781 aagcctcaga tctcctgcgc tttcctgtga agcagttgta cacgaccagc gggaaaaagg 841 tggactcgct gcaggccctg ctgcacagcc cctctgtgct ggtgtgtgcc gggcatgagg 901 ccttcagaac cccagccatg aaaaatgcca ggagaagcga ggctgaaact ttatctgggc 961 tgacttcaag aaacaaaaac gggagctggg ggccaaagac caagccgagt gtgatccatt 1021 cgcggtctcc gccaggcagc acgccacggc tgccagaaag gcctggtcct agcaaccccc 1081 cggtgggccc tgctcctggc aggcaccctc aggacacgcc agctcagtcg ggcccgctgg 1141 tggctggcga tgacatgaag aagaaggtcc gcatgaatga ggacggcagc ctgtccgtgg 1201 agatgaaagt ccgcttccac ctggtcggcg aggacacgct cctatggtcc cggaggatgg 1261 gcagggccag cgccctcacg gcagccagtg gggaagaccc cgttctgggg gaggtagacc 1321 ccctctgctg tgtgtgggag ggctaccctt ggggcttctc agagcctggg gtgtggggac 1381 cccggccctg cagggtggga tgcagggaag tctttggccg aggcgggcag ccagggccca 1441 agtatgaaat ctggacgaat cccctgcatg cctcccaggg agagagagtg gcagctcgga 1501 agaggtgggg actggcccag cacgtccgct gcagtggcct gtggggccac gggactgccg 1561 ggagggagag atgcagccag gacagtgcca gcccagcctc cagcaccggc ctccccgagg 1621 gctcggagcc agagtcctcc tgctgcccca ggaccccgga ggacggggtg gacagtgcca 1681 gcccctctgc ccagataggg gctgagcgga aagctggagg gagcctgggt gaggaccccg 1741 gcctatgcat agatggagca gggctgggcg gcccagagca aggcggccgc ctgacaccga 1801 gggcccggag tgaggagggg gcttcttcgg actcgtcagc cagcaccggc tctcatgagg 1861 gatccagcga atggggtggg cggccccagg gctgtccagg caaggcaagg gccgagacct 1921 ctcagcagga ggccagcgag ggaggcgacc ccgcttctcc agccctgagt ctttcatctt 1981 taaggagtga cgacctgcag gcagagacgc aaggacaggg taccgagcag gccacgggag 2041 cggctgtgac aagggagcct ctggttctgg gcctttcctg ctcctgggac tcggaaggag 2101 cctcttccac cccttccacc tgcacttcat cccagcaggg gcagagaagg cacagaagcc 2161 gggccagtgc aatgtcctca cccagcagcc ctggccttgg ccgagtggcc ccgagaggcc 2221 atcccaggca ttctcactac cgcaaggaca cccacagccc actggactcc tctgtaacca 2281 agcaagtgcc gaggcctcct gagcggcgaa gggcctgcca ggatggctca gtgccacgat 2341 attctggaag ctcatcgagc accaggacac aggcctctgg gaacctgaga cctccctcct 2401 cgggctctct tccttcccag gaccttctgg gaaccagcag tgccactgtc acccctgcag 2461 tccactcgga ttttgtttct ggagtctccc cgcacaacgc tccctctgcc gggtgggcag 2521 gggacgcggg gtccaggaca tgctcgccgg cccccatacc tccccacaca tccgactcct 2581 gctcaaaatc tggggctgcc agcccggggg aagaggccag ggacacgcct cagccctcct 2641 cacccttggt tctgcaggtt ggacggcctg agcaaggggc ggtgggcccc caccgaagcc 2701 actgctgctc acagcctggg acgcagccgg cccaagaggc ccagcgggga ccctcccctg 2761 aggctagctg gctgtgtggc aggtactgtc ccaccccgcc cagggggcgg ccctgccccc 2821 agaggcgctc ttccagctgt gggagcaccg gcagcagcca ccaaagcact gcccgggggc 2881 caggtgggag cccgcaggag gggacacgcc agccaggccc cacgccgtcc ccaggcccca 2941 attcaggggc atcaaggaga agcagtgcca gccagggtgc ggggtctcgg gggctgtccg 3001 aggagaagac cttgaggagt gggggaggcc cccaggggca ggaggaggcc agtggtgtgt 3061 cacccagctc tctgccccgc tcgtctccag aggctgtggt ccgcgaatgg ctggacaaca 3121 ttccagaaga gcccatactc atgacatatg agttggcgga cgagaccaca ggtgcagctg 3181 ggggtggcct gagaggcccc gaggtggacc ctggggatga ccattctctg gaaggcctgg 3241 gggagccagc tcaggcggga cagcagtccc tggaagggga ccccggccag gacccagagc 3301 cagagggagc cctcctgggg agtagtgaca ctggtcccca atcaggagag ggtgtccccc 3361 aaggggcagc tccagaggga gtttccgagg cccctgcaga ggccggagca gacagagagg 3421 ccccagcagg ctgcagggtg agcctgcggg cacttcctgg ccgggtgtct gcctccacgc 3481 agatcatgag ggcgctgatg ggctccaagc agggccggcc cagcagcgtg cccgaagtgt 3541 ctaggcccat ggccaggagg ctcagctgct cagccggggc cctcattact tgtctggcca 3601 gtctgcagtt atttgaggaa gaccttgggt ctcctgccag caaagtgagg ttcaaagact 3661 ccccttggta ccaggagctg ctcagcatct cgaaggacct gtggccagga tgtgacgttg 3721 gggaagacca gctggactca ggcctctggg agctcacatg gagccaggct ctgccagacc 3781 ttgggtccca tgccatgacg gagaacttca cgcccacatc ctcctctggt gtggacatca 3841 gcagcggctc tggaggctca ggggagagta gcgtaccctg tgccatggac ggcaccctgg 3901 tgacacaggg gacagagctg cccctgaaaa cctccaacca gaggcctgat tcaagaactt 3961 atgagagccc aggggatctg gaaaaccaac agcagtgttg tttcccaacc ttcttgaacg 4021 cccgagcctg cgcttgtgcc accaatgagg atgaagcaga aagagacagt gaggagcaga 4081 gggcgagctc gaacctggag cagttagctg aaaacacagt gcaagaagag gtgcaattag 4141 aggaaactaa agaaggaaca gaaggagaag ggctgcaaga agaggsggtg cagttagagg 4201 rractaaaac agaagaaggg ctgcaagaag agggggtgca gttagaggaa actaaaacag 4261 aagaagggct gcaagaagag ggggtgcagt tagaggaaac taaaacagaa gaagggctgc 4321 aagaagaggg ggtgcagtta gaggaaacta aaacagaaga agggctgcaa gaagaggggg 4381 tgcagttaga ggaaactaaa acagaagaag ggctgcaaga agagggggtg cagttagagg 4441 ggactaaaga aacggaagga gaaggacagc aagaagaaga ggcgcagtta gaggaaattg 4501 aagaaacagg aggagaaggg ctgcaagaag agggggtgca gttagaggaa gttaaagaag 4561 ggccagaagg aggactgcaa ggagaggctc ttgaagaggg tctcaaagag gaaggacttc 4621 cagaagaagg aagcgtccac gggcaggaat tgtcagaggc cagctctccg gatgggaaag 4681 gctcccagga agatgaccca gtccaggagg aggaagcagg aagagcctct gcctctgcag 4741 agccgtgccc cgcagagggc acagaggaac ccacagagcc ccctagtcat ctcagcgaga 4801 cggacccaag tgccagcgag agtcagagtg gctcccagct tgagcctggt ttggaaaagc 4861 cgcccggagc caccatgatg ggccaagagc acacgcaggc ccaacccacc cagggggctg 4921 cagagaggag ctcttcggtg gcctgcagcg cggctctgga ctgcgacccc atctgggtgt 4981 ccgtgttact gaagaagacg gagaaggcct tcctggccca ccttgccagt gcggtggctg 5041 agctccgagc acgctggggc ctgcaggaca atgatctgct ggaccagatg gcggccgagc 5101 tgcagcagga cgtggcccaa cgcctccagg acagcaccaa gagagagctc cagaagctcc 5161 agggccgggc gggtaggatg gtgctggagc ctccaaggga ggccctcacc ggggagctgc 5221 tcctgcagac ccagcagcgc agacaccgtc tccggggcct gcgaaacctc tcggccttct 5281 ctgagcggac cctgggcctg gggcccctct ccttcaccct ggaggacgag ccagccctca 5341 gcacagccct ggggagccag ctgggcgagg aggcggaggg ggaggagttc tgtccctgcg 5401 aggcctgcgt gaggaagaaa gtgagcccta tgtcccccaa ggccacaatg ggggcaacca 5461 gaggtcccat caaagaggcc tttgacctgc agcagattct gcagaggaag aggggagaac 5521 acactgatgg ggaggcagca gaggtggycc ctggcaagac ccacacggac cccacgagca 5581 ctaggactgt ccagggagct gagggagggc tggggccggg gctgagccag gggcctggag 5641 tggacgaggg tgaggatggc gaggggagcc agagactcaa cagagacaaa gatcccaaac 5701 tcggggaggc agagggagat gcaatggctc aggagagaga agggaaaacc cacaacagtg 5761 aaaccagtgc gggcagtgag ttgggggaag ctgagcagga gggagagggc ataagtgaaa 5821 ggggagaaac tgggggtcaa ggctctgggc atgaggacaa cttgcagggt gaagctgcgg 5881 caggaggtga ccaagatcca ggacagagtg atggggccga aggcatagag gccccggagg 5941 ctgaagggga ggcccagcca gagtcagaag gtgtagaggc cccagaggca gaaggggatg 6001 cccaggaggc tgaaggggag gcccagccag agtcagaaga tgtagaggcc ccagaggcag 6061 aaggagaggc ccagccagag tcagaagatg tagagacccc agaggcagaa tgggaggtcc 6121 agccagagtc agaaggtgca gaagccccgg aggcagaaaa ggaggcccag ccagagacag 6181 aaagtgtaga ggccctggag actgaagggg aggacgagcc agagtcagaa ggtgcagagg 6241 cccaagaggc agaagaggag gcccaggagg cagaagggca ggcccagcca gagtcagaag 6301 ttatagagtc ccaggaggca gaagaggaag cccagccaga gtcagaagat gtagaggccc 6361 tggaggttga agtggagacc caggaggcag aaggggaggc ccagccagag tcagaagatg 6421 tagaggcccc agaggctgaa ggggagatgc aagaggcaga agaggaggcc cagccagagt 6481 cagacggtgt agaggcccag ccaaagtcag aaggtgaaga ggcccaggag gttgaagggg 6541 agacccagaa gacagaaggg gatgcccagc cagagtcaga cggtgtagag gccccggagg 6601 cagaagagga ggcacaggag gctgaagggg aggtccagga ggcagaaggg gaggcccacc 6661 cagagtcaga agatgtagat gcccaggagg cagaagggga ggcccagcca gaatcagaag 6721 gtgtagaggc cccagaggca gaaggggagg cccagaaggc agaaggtata gaggccccag 6781 agactgaagg ggaggcccag ccagagtcag aaggtataga ggccccagag gctgaagggg 6841 aggcccagcc tgagtcagaa ggtgtagagg cccaggatgc agaaggggag gcccagccag 6901 agtcagaagg tatagaggcc caggaggctg aaaaggaggc ccaaccagag ttagaaggtg 6961 tagaggcccc agaggcagaa ggggaggccc agccagagtc agaaggtata gaggccccag 7021 aggcagaagg ggaggcccaa ccagagttag aaggtgtaga ggccccggag gctgaagagg 7081 aggcccagcc agagccagaa ggcgtagaga ccccggaggc tgaaggggag gcccagccag 7141 agtcaggagg agaaactcaa ggtgagaaaa aggggagccc tcaggtcagt ctaggagatg 7201 gccaatctga ggaggcttct gaaagcagca gcccagtccc tgaggacagg cccactccac 7261 ccccttcccc aggtggagac actccccacc aaaggccagg ctcccaaaca ggcccttcct 7321 cctccagagc atcctcttgg ggcaactgct ggcagaaaga ctcagaaaat gaccatgtac 7381 ttggagacac aaggagccct gatgccaagt ccacggggac ccctcatgca gagaggaagg 7441 ccaccaggat gtacccagaa agttctactt ctgagcaaga agaggcccct ttgggctcaa 7501 ggactccaga gcagggggcc agtgaaggtt atgacctaca agaggaccag gcactcggaa 7561 gtctcgcccc cactgaggca gtgggcaggg cagacggctt tggccaagat gacttagatt 7621 tctagacaag atcaagctag aaaacaatca cgagcttggg agctctgttt ttattcatat 7681 tttttctaca aaactgagca acgttcagtc cactggagat gtccatagta catggacaaa 7741 gaccaaggac ttgccaagga cacagcccat gccatgctgt cctgggactc ttaagtccag 7801 aagtgtcaga gagctctgcg gcccgtccca cacgcagtgt gaagaaaggg ggtgtctgcg 7861 gatctgcccg gttatcggag gtcagcccgg ctcctattta tttgtctgca gagcccgaaa 7921 gatggaactg attggaaagg ctccagttta gcttttgttt gtgggtttgt tttctgctag 7981 caagtgttgc tctctgtctt ttccctgttg atctcctgtt acttttctcc ttggcttctg 8041 ttggcactca cctcatttga ctttgaggtg ctttttttct agtctggaat atatttgatg 8101 actctgcaga aatacttggg caaagcaggt aacttcagag tcattggata aagtttgttc 8161 tcaactccaa aaaaaaaaaa aaaaa //