LOCUS AY168344 8137 bp mRNA linear HUM 20-MAY-2003
DEFINITION Homo sapiens retinitis pigmentosa 1-like 1 protein (RP1L1) mRNA,
RP1L1-4 allele, complete cds.
ACCESSION AY168344
VERSION AY168344.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 8137)
AUTHORS Bowne,S.J., Daiger,S.P., Malone,K.A., Heckenlively,J.R., Kennan,A.,
Humphries,P., Hughbanks-Wheaton,D., Birch,D.G., Liu,Q.,
Pierce,E.A., Zuo,J., Huang,Q., Donovan,D.D. and Sullivan,L.S.
TITLE Characterization of RP1L1, a highly polymorphic paralog of the
retinitis pigmentosa 1 (RP1) gene
JOURNAL Mol. Vis. 9, 129-137 (2003)
PUBMED 12724644
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8137)
AUTHORS Bowne,S.J., Daiger,S.P., Malone,K.A. and Sullivan,L.S.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2002) Human Genetics Center, University of Texas
Health Science Center Houston, 1200 Herman Pressler, Houston, TX
77030, USA
FEATURES Location/Qualifiers
source 1..8137
/db_xref="H-InvDB:HIT000084907"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
gene 1..8137
/gene="RP1L1"
/allele="4"
CDS 231..7577
/gene="RP1L1"
/allele="4"
/codon_start=1
/product="retinitis pigmentosa 1-like 1 protein"
/protein_id="AAN86962.1"
/translation="MNSTPRNAQAPSHRECFLPSVARTPSVTKVTPAKKITFLKRGDP
RFAGVRLAVHQRAFKTFSALMDELSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCY
LCSDKKPPKTPSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKTPRRILLIKNM
DPRLQQTVVLSHRNTRNLAAFLGKASDLLRFPVKQLYTTSGKKVDSLQALLHSPSVLV
CAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPE
RPGPSNPPVGPAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGE
DTLLWSRRMGRASALTAASGEDPVLGEVDPLCCVWEGYPWGFSEPGVWGPRPCRVGCR
EVFGRGGQPGPKYEIWTNPLHASQGERVAARKRWGLAQHVRCSGLWGHGTAGRERCSQ
DSASPASSTGLPEGSEPESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCID
GAGLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQ
EASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGAAVTREPLVLGLSCSWDSEGA
SSTPSTCTSSQQGQRRHRSRASAMSSPSSPGLGRVAPRGHPRHSHYRKDTHSPLDSSV
TKQVPRPPERRRACQDGSVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSSATV
TPAVHSDFVSGVSPHNAPSAGWAGDAGSRTCSPAPIPPHTSDSCSKSGAASPGEEARD
TPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEAQRGPSPEASWLCGRYCPTP
PRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSAS
QGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMT
YELADETTGAAGGGLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLG
SSDTGPQSGEGVPQGAAPEGVSEAPAEAGADREAPAGCRVSLRALPGRVSASTQIMRA
LMGSKQGRPSSVPEVSRPMARRLSCSAGALITCLASLQLFEEDLGSPASKVRFKDSPW
YQELLSISKDLWPGCDVGEDQLDSGLWELTWSQALPDLGSHAMTENFTPTSSSGVDIS
SGSGGSGESSVPCAMDGTLVTQGTELPLKTSNQRPDSRTYESPGDLENQQQCCFPTFL
NARACACATNEDEAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEXV
QLEXTKXXEGLQEEXVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEG
LQEEGVQLEGTKETEGEGQQEEEAQLEEIEETGGEGLQEEGVQLEEVKEGPEGGLQGE
ALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQEDDPVQEEEAGRASASAEPCPAEG
TEEPTEPPSHLSETDPSASESQSGSQLEPGLEKPPGATMMGQEHTQAQPTQGAAERSS
SVACSAALDCDPIWVSVLLKKTEKAFLAHLASAVAELRARWGLQDNDLLDQMAAELQQ
DVAQRLQDSTKRELQKLQGRAGRMVLEPPREALTGELLLQTQQRRHRLRGLRNLSAFS
ERTLGLGPLSFTLEDEPALSTALGSQLGEEAEGEEFCPCEACVRKKVSPMSPKATMGA
TRGPIKEAFDLQQILQRKRGEHTDGEAAEVXPGKTHTDPTSTRTVQGAEGGLGPGLSQ
GPGVDEGEDGEGSQRLNRDKDPKLGEAEGDAMAQEREGKTHNSETSAGSELGEAEQEG
EGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQPESEGVE
APEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESEGAEAPE
AEKEAQPETESVEALETEGEDEPESEGAEAQEAEEEAQEAEGQAQPESEVIESQEAEE
EAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQ
PKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESED
VDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQ
PESEGVEAQDAEGEAQPESEGIEAQEAEKEAQPELEGVEAPEAEGEAQPESEGIEAPE
AEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESGGETQGEKKGSPQVSLG
DGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRASSWGNCWQKDSEN
DHVLGDTRSPDAKSTGTPHAERKATRMYPESSTSEQEEAPLGSRTPEQGASEGYDLQE
DQALGSLAPTEAVGRADGFGQDDLDF"
BASE COUNT 1955 a 2246 c 2752 g 1175 t
ORIGIN
1 ctcctggccc aagggactgg ggcctcaggc tctcaggcca aggagagtgg ccccgaggac
61 tgtccggagg agggtggcca gccctgctgc ccagagggac tgagccactg gcagggaagg
121 aggcggtgtt ccccctggcc tgactttcct ccaaaggacg tccccctgag gcttaggggc
181 tgagccatgc ccttgtgctc cctggaggac gcggccagag cccccacacc atgaacagca
241 cccccaggaa tgcccaggcc ccgagccacc gtgagtgctt cctgccctct gtggctcgca
301 ccccctcggt caccaaggtc acgccagcca aaaagatcac cttcctcaag cgaggggatc
361 cacggtttgc tggggtccgc ctggccgttc accagcgcgc ctttaagacc ttcagcgccc
421 tcatggacga gctctcccag cgcgtgcctc tctcctttgg ggtgcgctct gtcaccacac
481 cccggggcct gcatagcctc agcgccctgg agcagctgga agatggaggc tgctacctct
541 gctctgataa gaagcccccc aagaccccca gtggaccagg ccggccacag gagagaaacc
601 ccactgctca gcagttgcgg gatgtcgaag gccagcgtga agccccaggc acctcctcct
661 cccggaagag tcttaaaacc ccccggagga tactgctgat taagaacatg gaccctcgcc
721 tccagcagac agtggttctc agtcacagga atactaggaa cctggccgcc tttctcggca
781 aagcctcaga tctcctgcgc tttcctgtga agcagttgta cacgaccagc gggaaaaagg
841 tggactcgct gcaggccctg ctgcacagcc cctctgtgct ggtgtgtgcc gggcatgagg
901 ccttcagaac cccagccatg aaaaatgcca ggagaagcga ggctgaaact ttatctgggc
961 tgacttcaag aaacaaaaac gggagctggg ggccaaagac caagccgagt gtgatccatt
1021 cgcggtctcc gccaggcagc acgccacggc tgccagaaag gcctggtcct agcaaccccc
1081 cggtgggccc tgctcctggc aggcaccctc aggacacgcc agctcagtcg ggcccgctgg
1141 tggctggcga tgacatgaag aagaaggtcc gcatgaatga ggacggcagc ctgtccgtgg
1201 agatgaaagt ccgcttccac ctggtcggcg aggacacgct cctatggtcc cggaggatgg
1261 gcagggccag cgccctcacg gcagccagtg gggaagaccc cgttctgggg gaggtagacc
1321 ccctctgctg tgtgtgggag ggctaccctt ggggcttctc agagcctggg gtgtggggac
1381 cccggccctg cagggtggga tgcagggaag tctttggccg aggcgggcag ccagggccca
1441 agtatgaaat ctggacgaat cccctgcatg cctcccaggg agagagagtg gcagctcgga
1501 agaggtgggg actggcccag cacgtccgct gcagtggcct gtggggccac gggactgccg
1561 ggagggagag atgcagccag gacagtgcca gcccagcctc cagcaccggc ctccccgagg
1621 gctcggagcc agagtcctcc tgctgcccca ggaccccgga ggacggggtg gacagtgcca
1681 gcccctctgc ccagataggg gctgagcgga aagctggagg gagcctgggt gaggaccccg
1741 gcctatgcat agatggagca gggctgggcg gcccagagca aggcggccgc ctgacaccga
1801 gggcccggag tgaggagggg gcttcttcgg actcgtcagc cagcaccggc tctcatgagg
1861 gatccagcga atggggtggg cggccccagg gctgtccagg caaggcaagg gccgagacct
1921 ctcagcagga ggccagcgag ggaggcgacc ccgcttctcc agccctgagt ctttcatctt
1981 taaggagtga cgacctgcag gcagagacgc aaggacaggg taccgagcag gccacgggag
2041 cggctgtgac aagggagcct ctggttctgg gcctttcctg ctcctgggac tcggaaggag
2101 cctcttccac cccttccacc tgcacttcat cccagcaggg gcagagaagg cacagaagcc
2161 gggccagtgc aatgtcctca cccagcagcc ctggccttgg ccgagtggcc ccgagaggcc
2221 atcccaggca ttctcactac cgcaaggaca cccacagccc actggactcc tctgtaacca
2281 agcaagtgcc gaggcctcct gagcggcgaa gggcctgcca ggatggctca gtgccacgat
2341 attctggaag ctcatcgagc accaggacac aggcctctgg gaacctgaga cctccctcct
2401 cgggctctct tccttcccag gaccttctgg gaaccagcag tgccactgtc acccctgcag
2461 tccactcgga ttttgtttct ggagtctccc cgcacaacgc tccctctgcc gggtgggcag
2521 gggacgcggg gtccaggaca tgctcgccgg cccccatacc tccccacaca tccgactcct
2581 gctcaaaatc tggggctgcc agcccggggg aagaggccag ggacacgcct cagccctcct
2641 cacccttggt tctgcaggtt ggacggcctg agcaaggggc ggtgggcccc caccgaagcc
2701 actgctgctc acagcctggg acgcagccgg cccaagaggc ccagcgggga ccctcccctg
2761 aggctagctg gctgtgtggc aggtactgtc ccaccccgcc cagggggcgg ccctgccccc
2821 agaggcgctc ttccagctgt gggagcaccg gcagcagcca ccaaagcact gcccgggggc
2881 caggtgggag cccgcaggag gggacacgcc agccaggccc cacgccgtcc ccaggcccca
2941 attcaggggc atcaaggaga agcagtgcca gccagggtgc ggggtctcgg gggctgtccg
3001 aggagaagac cttgaggagt gggggaggcc cccaggggca ggaggaggcc agtggtgtgt
3061 cacccagctc tctgccccgc tcgtctccag aggctgtggt ccgcgaatgg ctggacaaca
3121 ttccagaaga gcccatactc atgacatatg agttggcgga cgagaccaca ggtgcagctg
3181 ggggtggcct gagaggcccc gaggtggacc ctggggatga ccattctctg gaaggcctgg
3241 gggagccagc tcaggcggga cagcagtccc tggaagggga ccccggccag gacccagagc
3301 cagagggagc cctcctgggg agtagtgaca ctggtcccca atcaggagag ggtgtccccc
3361 aaggggcagc tccagaggga gtttccgagg cccctgcaga ggccggagca gacagagagg
3421 ccccagcagg ctgcagggtg agcctgcggg cacttcctgg ccgggtgtct gcctccacgc
3481 agatcatgag ggcgctgatg ggctccaagc agggccggcc cagcagcgtg cccgaagtgt
3541 ctaggcccat ggccaggagg ctcagctgct cagccggggc cctcattact tgtctggcca
3601 gtctgcagtt atttgaggaa gaccttgggt ctcctgccag caaagtgagg ttcaaagact
3661 ccccttggta ccaggagctg ctcagcatct cgaaggacct gtggccagga tgtgacgttg
3721 gggaagacca gctggactca ggcctctggg agctcacatg gagccaggct ctgccagacc
3781 ttgggtccca tgccatgacg gagaacttca cgcccacatc ctcctctggt gtggacatca
3841 gcagcggctc tggaggctca ggggagagta gcgtaccctg tgccatggac ggcaccctgg
3901 tgacacaggg gacagagctg cccctgaaaa cctccaacca gaggcctgat tcaagaactt
3961 atgagagccc aggggatctg gaaaaccaac agcagtgttg tttcccaacc ttcttgaacg
4021 cccgagcctg cgcttgtgcc accaatgagg atgaagcaga aagagacagt gaggagcaga
4081 gggcgagctc gaacctggag cagttagctg aaaacacagt gcaagaagag gtgcaattag
4141 aggaaactaa agaaggaaca gaaggagaag ggctgcaaga agaggsggtg cagttagagg
4201 rractaaary arwagaaggg ctgcaagaag agrgggtgca gttagaggaa actaaaacag
4261 aagaagggct gcaagaagag ggggtgcagt tagaggaaac taaaacagaa gaagggctgc
4321 aagaagaggg ggtgcagtta gaggaaacta aaacagaaga agggctgcaa gaagaggggg
4381 tgcagttaga ggggactaaa gaaacggaag gagaaggaca gcaagaagaa gaggcgcagt
4441 tagaggaaat tgaagaaaca ggaggagaag ggctgcaaga agagggggtg cagttagagg
4501 aagttaaaga agggccagaa ggaggactgc aaggagaggc tcttgaagag ggtctcaaag
4561 aggaaggact tccagaagaa ggaagcgtcc acgggcagga attgtcagag gccagctctc
4621 cggatgggaa aggctcccag gaagatgacc cagtccagga ggaggaagca ggaagagcct
4681 ctgcctctgc agagccgtgc cccgcagagg gcacagagga acccacagag ccccctagtc
4741 atctcagcga gacggaccca agtgccagcg agagtcagag tggctcccag cttgagcctg
4801 gtttggaaaa gccgcccgga gccaccatga tgggccaaga gcacacgcag gcccaaccca
4861 cccagggggc tgcagagagg agctcttcgg tggcctgcag cgcggctctg gactgcgacc
4921 ccatctgggt gtccgtgtta ctgaagaaga cggagaaggc cttcctggcc caccttgcca
4981 gtgcggtggc tgagctccga gcacgctggg gcctgcagga caatgatctg ctggaccaga
5041 tggcggccga gctgcagcag gacgtggccc aacgcctcca ggacagcacc aagagagagc
5101 tccagaagct ccagggccgg gcgggtagga tggtgctgga gcctccaagg gaggccctca
5161 ccggggagct gctcctgcag acccagcagc gcagacaccg tctccggggc ctgcgaaacc
5221 tctcggcctt ctctgagcgg accctgggcc tggggcccct ctccttcacc ctggaggacg
5281 agccagccct cagcacagcc ctggggagcc agctgggcga ggaggcggag ggggaggagt
5341 tctgtccctg cgaggcctgc gtgaggaaga aagtgagccc tatgtccccc aaggccacaa
5401 tgggggcaac cagaggtccc atcaaagagg cctttgacct gcagcagatt ctgcagagga
5461 agaggggaga acacactgat ggggaggcag cagaggtggy ccctggcaag acccacacgg
5521 accccacgag cactaggact gtccagggag ctgagggagg gctggggccg gggctgagcc
5581 aggggcctgg agtggacgag ggtgaggatg gcgaggggag ccagagactc aacagagaca
5641 aagatcccaa actcggggag gcagagggag atgcaatggc tcaggagaga gaagggaaaa
5701 cccacaacag tgaaaccagt gcgggcagtg agttggggga agctgagcag gagggagagg
5761 gcataagtga aaggggagaa actgggggtc aaggctctgg gcatgaggac aacttgcagg
5821 gtgaagctgc ggcaggaggt gaccaagatc caggacagag tgatggggcc gaaggcatag
5881 aggccccgga ggctgaaggg gaggcccagc cagagtcaga aggtgtagag gccccagagg
5941 cagaagggga tgcccaggag gctgaagggg aggcccagcc agagtcagaa gatgtagagg
6001 ccccagaggc agaaggagag gcccagccag agtcagaaga tgtagagacc ccagaggcag
6061 aatgggaggt ccagccagag tcagaaggtg cagaagcccc ggaggcagaa aaggaggccc
6121 agccagagac agaaagtgta gaggccctgg agactgaagg ggaggacgag ccagagtcag
6181 aaggtgcaga ggcccaagag gcagaagagg aggcccagga ggcagaaggg caggcccagc
6241 cagagtcaga agttatagag tcccaggagg cagaagagga agcccagcca gagtcagaag
6301 atgtagaggc cctggaggtt gaagtggaga cccaggaggc agaaggggag gcccagccag
6361 agtcagaaga tgtagaggcc ccagaggctg aaggggagat gcaagaggca gaagaggagg
6421 cccagccaga gtcagacggt gtagaggccc agccaaagtc agaaggtgaa gaggcccagg
6481 aggttgaagg ggagacccag aagacagaag gggatgccca gccagagtca gacggtgtag
6541 aggccccgga ggcagaagag gaggcacagg aggctgaagg ggaggtccag gaggcagaag
6601 gggaggccca cccagagtca gaagatgtag atgcccagga ggcagaaggg gaggcccagc
6661 cagaatcaga aggtgtagag gccccagagg cagaagggga ggcccagaag gcagaaggta
6721 tagaggcccc agagactgaa ggggaggccc agccagagtc agaaggtata gaggccccag
6781 aggctgaagg ggaggcccag cctgagtcag aaggtgtaga ggcccaggat gcagaagggg
6841 aggcccagcc agagtcagaa ggtatagagg cccaggaggc tgaaaaggag gcccaaccag
6901 agttagaagg tgtagaggcc ccagaggcag aaggggaggc ccagccagag tcagaaggta
6961 tagaggcccc agaggcagaa ggggaggccc aaccagagtt agaaggtgta gaggccccgg
7021 aggctgaaga ggaggcccag ccagagccag aaggcgtaga gaccccggag gctgaagggg
7081 aggcccagcc agagtcagga ggagaaactc aaggtgagaa aaaggggagc cctcaggtca
7141 gtctaggaga tggccaatct gaggaggctt ctgaaagcag cagcccagtc cctgaggaca
7201 ggcccactcc acccccttcc ccaggtggag acactcccca ccaaaggcca ggctcccaaa
7261 caggcccttc ctcctccaga gcatcctctt ggggcaactg ctggcagaaa gactcagaaa
7321 atgaccatgt acttggagac acaaggagcc ctgatgccaa gtccacgggg acccctcatg
7381 cagagaggaa ggccaccagg atgtacccag aaagttctac ttctgagcaa gaagaggccc
7441 ctttgggctc aaggactcca gagcaggggg ccagtgaagg ttatgaccta caagaggacc
7501 aggcactcgg aagtctcgcc cccactgagg cagtgggcag ggcagacggc tttggccaag
7561 atgacttaga tttctagaca agatcaagct agaaaacaat cacgagcttg ggagctctgt
7621 ttttattcat attttttcta caaaactgag caacgttcag tccactggag atgtccatag
7681 tacatggaca aagaccaagg acttgccaag gacacagccc atgccatgct gtcctgggac
7741 tcttaagtcc agaagtgtca gagagctctg cggcccgtcc cacacgcagt gtgaagaaag
7801 ggggtgtctg cggatctgcc cggttatcgg aggtcagccc ggctcctatt tatttgtctg
7861 cagagcccga aagatggaac tgattggaaa ggctccagtt tagcttttgt ttgtgggttt
7921 gttttctgct agcaagtgtt gctctctgtc ttttccctgt tgatctcctg ttacttttct
7981 ccttggcttc tgttggcact cacctcattt gactttgagg tgcttttttt ctagtctgga
8041 atatatttga tgactctgca gaaatacttg ggcaaagcag gtaacttcag agtcattgga
8101 taaagtttgt tctcaactcc aaaaaaaaaa aaaaaaa
//