LOCUS AY168343 8089 bp mRNA linear HUM 20-MAY-2003
DEFINITION Homo sapiens retinitis pigmentosa 1-like 1 protein (RP1L1) mRNA,
RP1L1-3 allele, complete cds.
ACCESSION AY168343
VERSION AY168343.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 8089)
AUTHORS Bowne,S.J., Daiger,S.P., Malone,K.A., Heckenlively,J.R., Kennan,A.,
Humphries,P., Hughbanks-Wheaton,D., Birch,D.G., Liu,Q.,
Pierce,E.A., Zuo,J., Huang,Q., Donovan,D.D. and Sullivan,L.S.
TITLE Characterization of RP1L1, a highly polymorphic paralog of the
retinitis pigmentosa 1 (RP1) gene
JOURNAL Mol. Vis. 9, 129-137 (2003)
PUBMED 12724644
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 8089)
AUTHORS Bowne,S.J., Daiger,S.P., Malone,K.A. and Sullivan,L.S.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2002) Human Genetics Center, University of Texas
Health Science Center Houston, 1200 Herman Pressler, Houston, TX
77030, USA
FEATURES Location/Qualifiers
source 1..8089
/db_xref="H-InvDB:HIT000084906"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
gene 1..8089
/gene="RP1L1"
/allele="3"
CDS 231..7529
/gene="RP1L1"
/allele="3"
/codon_start=1
/product="retinitis pigmentosa 1-like 1 protein"
/protein_id="AAN86961.1"
/translation="MNSTPRNAQAPSHRECFLPSVARTPSVTKVTPAKKITFLKRGDP
RFAGVRLAVHQRAFKTFSALMDELSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCY
LCSDKKPPKTPSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKTPRRILLIKNM
DPRLQQTVVLSHRNTRNLAAFLGKASDLLRFPVKQLYTTSGKKVDSLQALLHSPSVLV
CAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPE
RPGPSNPPVGPAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGE
DTLLWSRRMGRASALTAASGEDPVLGEVDPLCCVWEGYPWGFSEPGVWGPRPCRVGCR
EVFGRGGQPGPKYEIWTNPLHASQGERVAARKRWGLAQHVRCSGLWGHGTAGRERCSQ
DSASPASSTGLPEGSEPESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCID
GAGLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQ
EASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGAAVTREPLVLGLSCSWDSEGA
SSTPSTCTSSQQGQRRHRSRASAMSSPSSPGLGRVAPRGHPRHSHYRKDTHSPLDSSV
TKQVPRPPERRRACQDGSVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSSATV
TPAVHSDFVSGVSPHNAPSAGWAGDAGSRTCSPAPIPPHTSDSCSKSGAASPGEEARD
TPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEAQRGPSPEASWLCGRYCPTP
PRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSAS
QGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMT
YELADETTGAAGGGLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLG
SSDTGPQSGEGVPQGAAPEGVSEAPAEAGADREAPAGCRVSLRALPGRVSASTQIMRA
LMGSKQGRPSSVPEVSRPMARRLSCSAGALITCLASLQLFEEDLGSPASKVRFKDSPW
YQELLSISKDLWPGCDVGEDQLDSGLWELTWSQALPDLGSHAMTENFTPTSSSGVDIS
SGSGGSGESSVPCAMDGTLVTQGTELPLKTSNQRPDSRTYESPGDLENQQQCCFPTFL
NARACACATNEDEAERDSEEQRSSSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEAV
QLEGTKVIEGLQEERVQLEETKTEEGLQEEGVQLEXTKTEEGLQEEGVQLEXTKETEG
EGQQEEEAQLEEIEETGGEGLQEEGVQLEEVKEGPEGGLQGEALEEGLKEEGLPEEGS
VHGQELSEASSPDGKGSQEDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSHLSETDP
SASESQSGSQLEPGLEKPPGATMMGQEHTQAQPTQGAAERSSSVACSAALDCDPIWVS
VLLKKTEKAFLAHLASAVAELRARWGLQDNDLLDQMAAELQQDVAQRLQDSTKRELQK
LQGRAGRMVLEPPREALTGELLLQTQQRRHRLRGLRNLSAFSERTLGLGPLSFTLEDE
PALSTALGSQLGEEAEGEEFCPCEACVRKKVSPMSPKATMGATRGPIKEAFDLQQILQ
RKRGEHTDGEAAEVXPGKTHTDPTSTRTVQGAEGGLGPGLSQGPGVDEGEDGEGSQRL
NRDKDPKLGEAEGDAMAQEREGKTHNSETSAGSELGEAEQEGEGISERGETGGQGSGH
EDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQ
PESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALE
TEGEDEPESEGAEAQEAEEEAQEAEGQAQPESEVIESQEAEEEAQPESEDVEALEVEV
ETQEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQ
KTEGDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEG
VEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQ
PESEGIEAQEAEKEAQPELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPE
AEEEAQPEPEGVETPEAEGEAQPESGGETQGEKKGSPQVSLGDGQSEEASESSSPVPE
DRPTPPPSPGGDTPHQRPGSQTGPSSSRASSWGNCWQKDSENDHVLGDTRSPDAKSTG
TPHAERKATRMYPESSTSEQEEAPLGSRTPEQGASEGYDLQEDQALGSLAPTEAVGRA
DGFGQDDLDF"
BASE COUNT 1935 a 2242 c 2734 g 1173 t
ORIGIN
1 ctcctggccc aagggactgg ggcctcaggc tctcaggcca aggagagtgg ccccgaggac
61 tgtccggagg agggtggcca gccctgctgc ccagagggac tgagccactg gcagggaagg
121 aggcggtgtt ccccctggcc tgactttcct ccaaaggacg tccccctgag gcttaggggc
181 tgagccatgc ccttgtgctc cctggaggac gcggccagag cccccacacc atgaacagca
241 cccccaggaa tgcccaggcc ccgagccacc gtgagtgctt cctgccctct gtggctcgca
301 ccccctcggt caccaaggtc acgccagcca aaaagatcac cttcctcaag cgaggggatc
361 cacggtttgc tggggtccgc ctggccgttc accagcgcgc ctttaagacc ttcagcgccc
421 tcatggacga gctctcccag cgcgtgcctc tctcctttgg ggtgcgctct gtcaccacac
481 cccggggcct gcatagcctc agcgccctgg agcagctgga agatggaggc tgctacctct
541 gctctgataa gaagcccccc aagaccccca gtggaccagg ccggccacag gagagaaacc
601 ccactgctca gcagttgcgg gatgtcgaag gccagcgtga agccccaggc acctcctcct
661 cccggaagag tcttaaaacc ccccggagga tactgctgat taagaacatg gaccctcgcc
721 tccagcagac agtggttctc agtcacagga atactaggaa cctggccgcc tttctcggca
781 aagcctcaga tctcctgcgc tttcctgtga agcagttgta cacgaccagc gggaaaaagg
841 tggactcgct gcaggccctg ctgcacagcc cctctgtgct ggtgtgtgcc gggcatgagg
901 ccttcagaac cccagccatg aaaaatgcca ggagaagcga ggctgaaact ttatctgggc
961 tgacttcaag aaacaaaaac gggagctggg ggccaaagac caagccgagt gtgatccatt
1021 cgcggtctcc gccaggcagc acgccacggc tgccagaaag gcctggtcct agcaaccccc
1081 cggtgggccc tgctcctggc aggcaccctc aggacacgcc agctcagtcg ggcccgctgg
1141 tggctggcga tgacatgaag aagaaggtcc gcatgaatga ggacggcagc ctgtccgtgg
1201 agatgaaagt ccgcttccac ctggtcggcg aggacacgct cctatggtcc cggaggatgg
1261 gcagggccag cgccctcacg gcagccagtg gggaagaccc cgttctgggg gaggtagacc
1321 ccctctgctg tgtgtgggag ggctaccctt ggggcttctc agagcctggg gtgtggggac
1381 cccggccctg cagggtggga tgcagggaag tctttggccg aggcgggcag ccagggccca
1441 agtatgaaat ctggacgaat cccctgcatg cctcccaggg agagagagtg gcagctcgga
1501 agaggtgggg actggcccag cacgtccgct gcagtggcct gtggggccac gggactgccg
1561 ggagggagag atgcagccag gacagtgcca gcccagcctc cagcaccggc ctccccgagg
1621 gctcggagcc agagtcctcc tgctgcccca ggaccccgga ggacggggtg gacagtgcca
1681 gcccctctgc ccagataggg gctgagcgga aagctggagg gagcctgggt gaggaccccg
1741 gcctatgcat agatggagca gggctgggcg gcccagagca aggcggccgc ctgacaccga
1801 gggcccggag tgaggagggg gcttcttcgg actcgtcagc cagcaccggc tctcatgagg
1861 gatccagcga atggggtggg cggccccagg gctgtccagg caaggcaagg gccgagacct
1921 ctcagcagga ggccagcgag ggaggcgacc ccgcttctcc agccctgagt ctttcatctt
1981 taaggagtga cgacctgcag gcagagacgc aaggacaggg taccgagcag gccacgggag
2041 cggctgtgac aagggagcct ctggttctgg gcctttcctg ctcctgggac tcggaaggag
2101 cctcttccac cccttccacc tgcacttcat cccagcaggg gcagagaagg cacagaagcc
2161 gggccagtgc aatgtcctca cccagcagcc ctggccttgg ccgagtggcc ccgagaggcc
2221 atcccaggca ttctcactac cgcaaggaca cccacagccc actggactcc tctgtaacca
2281 agcaagtgcc gaggcctcct gagcggcgaa gggcctgcca ggatggctca gtgccacgat
2341 attctggaag ctcatcgagc accaggacac aggcctctgg gaacctgaga cctccctcct
2401 cgggctctct tccttcccag gaccttctgg gaaccagcag tgccactgtc acccctgcag
2461 tccactcgga ttttgtttct ggagtctccc cgcacaacgc tccctctgcc gggtgggcag
2521 gggacgcggg gtccaggaca tgctcgccgg cccccatacc tccccacaca tccgactcct
2581 gctcaaaatc tggggctgcc agcccggggg aagaggccag ggacacgcct cagccctcct
2641 cacccttggt tctgcaggtt ggacggcctg agcaaggggc ggtgggcccc caccgaagcc
2701 actgctgctc acagcctggg acgcagccgg cccaagaggc ccagcgggga ccctcccctg
2761 aggctagctg gctgtgtggc aggtactgtc ccaccccgcc cagggggcgg ccctgccccc
2821 agaggcgctc ttccagctgt gggagcaccg gcagcagcca ccaaagcact gcccgggggc
2881 caggtgggag cccgcaggag gggacacgcc agccaggccc cacgccgtcc ccaggcccca
2941 attcaggggc atcaaggaga agcagtgcca gccagggtgc ggggtctcgg gggctgtccg
3001 aggagaagac cttgaggagt gggggaggcc cccaggggca ggaggaggcc agtggtgtgt
3061 cacccagctc tctgccccgc tcgtctccag aggctgtggt ccgcgaatgg ctggacaaca
3121 ttccagaaga gcccatactc atgacatatg agttggcgga cgagaccaca ggtgcagctg
3181 ggggtggcct gagaggcccc gaggtggacc ctggggatga ccattctctg gaaggcctgg
3241 gggagccagc tcaggcggga cagcagtccc tggaagggga ccccggccag gacccagagc
3301 cagagggagc cctcctgggg agtagtgaca ctggtcccca atcaggagag ggtgtccccc
3361 aaggggcagc tccagaggga gtttccgagg cccctgcaga ggccggagca gacagagagg
3421 ccccagcagg ctgcagggtg agcctgcggg cacttcctgg ccgggtgtct gcctccacgc
3481 agatcatgag ggcgctgatg ggctccaagc agggccggcc cagcagcgtg cccgaagtgt
3541 ctaggcccat ggccaggagg ctcagctgct cagccggggc cctcattact tgtctggcca
3601 gtctgcagtt atttgaggaa gaccttgggt ctcctgccag caaagtgagg ttcaaagact
3661 ccccttggta ccaggagctg ctcagcatct cgaaggacct gtggccagga tgtgacgttg
3721 gggaagacca gctggactca ggcctctggg agctcacatg gagccaggct ctgccagacc
3781 ttgggtccca tgccatgacg gagaacttca cgcccacatc ctcctctggt gtggacatca
3841 gcagcggctc tggaggctca ggggagagta gcgtaccctg tgccatggac ggcaccctgg
3901 tgacacaggg gacagagctg cccctgaaaa cctccaacca gaggcctgat tcaagaactt
3961 atgagagccc aggggatctg gaaaaccaac agcagtgttg tttcccaacc ttcttgaacg
4021 cccgagcctg cgcttgtgcc accaatgagg atgaagcaga aagagacagt gaggagcaga
4081 ggtcgagctc gaacctggag cagttagctg aaaacacagt gcaagaagag gtgcaattag
4141 aggaaactaa agaaggaaca gaaggagaag ggctgcaaga agaggcggtg cagttagagg
4201 ggactaaagt aatagaaggg ctgcaagaag agagggtgca gttagaggaa actaaaacag
4261 aagaagggct gcaagaagag ggggtgcagt tagaggrrac taaaacagaa gaagggctgc
4321 aagaagaggg ggtgcagtta gaggrracta aagaaacgga aggagaagga cagcaagaag
4381 aagaggcgca gttagaggaa attgaagaaa caggaggaga agggctgcaa gaagaggggg
4441 tgcagttaga ggaagttaaa gaagggccag aaggaggact gcaaggagag gctcttgaag
4501 agggtctcaa agaggaagga cttccagaag aaggaagcgt ccacgggcag gaattgtcag
4561 aggccagctc tccggatggg aaaggctccc aggaagatga cccagtccag gaggaggaag
4621 caggaagagc ctctgcctct gcagagccgt gccccgcaga gggcacagag gaacccacag
4681 agccccctag tcatctcagc gagacggacc caagtgccag cgagagtcag agtggctccc
4741 agcttgagcc tggtttggaa aagccgcccg gagccaccat gatgggccaa gagcacacgc
4801 aggcccaacc cacccagggg gctgcagaga ggagctcttc ggtggcctgc agcgcggctc
4861 tggactgcga ccccatctgg gtgtccgtgt tactgaagaa gacggagaag gccttcctgg
4921 cccaccttgc cagtgcggtg gctgagctcc gagcacgctg gggcctgcag gacaatgatc
4981 tgctggacca gatggcggcc gagctgcagc aggacgtggc ccaacgcctc caggacagca
5041 ccaagagaga gctccagaag ctccagggcc gggcgggtag gatggtgctg gagcctccaa
5101 gggaggccct caccggggag ctgctcctgc agacccagca gcgcagacac cgtctccggg
5161 gcctgcgaaa cctctcggcc ttctctgagc ggaccctggg cctggggccc ctctccttca
5221 ccctggagga cgagccagcc ctcagcacag ccctggggag ccagctgggc gaggaggcgg
5281 agggggagga gttctgtccc tgcgaggcct gcgtgaggaa gaaagtgagc cctatgtccc
5341 ccaaggccac aatgggggca accagaggtc ccatcaaaga ggcctttgac ctgcagcaga
5401 ttctgcagag gaagagggga gaacacactg atggggaggc agcagaggtg gyccctggca
5461 agacccacac ggaccccacg agcactagga ctgtccaggg agctgaggga gggctggggc
5521 cggggctgag ccaggggcct ggagtggacg agggtgagga tggcgagggg agccagagac
5581 tcaacagaga caaagatccc aaactcgggg aggcagaggg agatgcaatg gctcaggaga
5641 gagaagggaa aacccacaac agtgaaacca gtgcgggcag tgagttgggg gaagctgagc
5701 aggagggaga gggcataagt gaaaggggag aaactggggg tcaaggctct gggcatgagg
5761 acaacttgca gggtgaagct gcggcaggag gtgaccaaga tccaggacag agtgatgggg
5821 ccgaaggcat agaggccccg gaggctgaag gggaggccca gccagagtca gaaggtgtag
5881 aggccccaga ggcagaaggg gatgcccagg aggctgaagg ggaggcccag ccagagtcag
5941 aagatgtaga ggccccagag gcagaaggag aggcccagcc agagtcagaa gatgtagaga
6001 ccccagaggc agaatgggag gtccagccag agtcagaagg tgcagaagcc ccggaggcag
6061 aaaaggaggc ccagccagag acagaaagtg tagaggccct ggagactgaa ggggaggacg
6121 agccagagtc agaaggtgca gaggcccaag aggcagaaga ggaggcccag gaggcagaag
6181 ggcaggccca gccagagtca gaagttatag agtcccagga ggcagaagag gaagcccagc
6241 cagagtcaga agatgtagag gccctggagg ttgaagtgga gacccaggag gcagaagggg
6301 aggcccagcc agagtcagaa gatgtagagg ccccagaggc tgaaggggag atgcaagagg
6361 cagaagagga ggcccagcca gagtcagacg gtgtagaggc ccagccaaag tcagaaggtg
6421 aagaggccca ggaggttgaa ggggagaccc agaagacaga aggggatgcc cagccagagt
6481 cagacggtgt agaggccccg gaggcagaag aggaggcaca ggaggctgaa ggggaggtcc
6541 aggaggcaga aggggaggcc cacccagagt cagaagatgt agatgcccag gaggcagaag
6601 gggaggccca gccagaatca gaaggtgtag aggccccaga ggcagaaggg gaggcccaga
6661 aggcagaagg tatagaggcc ccagagactg aaggggaggc ccagccagag tcagaaggta
6721 tagaggcccc agaggctgaa ggggaggccc agcctgagtc agaaggtgta gaggcccagg
6781 atgcagaagg ggaggcccag ccagagtcag aaggtataga ggcccaggag gctgaaaagg
6841 aggcccaacc agagttagaa ggtgtagagg ccccagaggc agaaggggag gcccagccag
6901 agtcagaagg tatagaggcc ccagaggcag aaggggaggc ccaaccagag ttagaaggtg
6961 tagaggcccc ggaggctgaa gaggaggccc agccagagcc agaaggcgta gagaccccgg
7021 aggctgaagg ggaggcccag ccagagtcag gaggagaaac tcaaggtgag aaaaagggga
7081 gccctcaggt cagtctagga gatggccaat ctgaggaggc ttctgaaagc agcagcccag
7141 tccctgagga caggcccact ccaccccctt ccccaggtgg agacactccc caccaaaggc
7201 caggctccca aacaggccct tcctcctcca gagcatcctc ttggggcaac tgctggcaga
7261 aagactcaga aaatgaccat gtacttggag acacaaggag ccctgatgcc aagtccacgg
7321 ggacccctca tgcagagagg aaggccacca ggatgtaccc agaaagttct acttctgagc
7381 aagaagaggc ccctttgggc tcaaggactc cagagcaggg ggccagtgaa ggttatgacc
7441 tacaagagga ccaggcactc ggaagtctcg cccccactga ggcagtgggc agggcagacg
7501 gctttggcca agatgactta gatttctaga caagatcaag ctagaaaaca atcacgagct
7561 tgggagctct gtttttattc atattttttc tacaaaactg agcaacgttc agtccactgg
7621 agatgtccat agtacatgga caaagaccaa ggacttgcca aggacacagc ccatgccatg
7681 ctgtcctggg actcttaagt ccagaagtgt cagagagctc tgcggcccgt cccacacgca
7741 gtgtgaagaa agggggtgtc tgcggatctg cccggttatc ggaggtcagc ccggctccta
7801 tttatttgtc tgcagagccc gaaagatgga actgattgga aaggctccag tttagctttt
7861 gtttgtgggt ttgttttctg ctagcaagtg ttgctctctg tcttttccct gttgatctcc
7921 tgttactttt ctccttggct tctgttggca ctcacctcat ttgactttga ggtgcttttt
7981 ttctagtctg gaatatattt gatgactctg cagaaatact tgggcaaagc aggtaacttc
8041 agagtcattg gataaagttt gttctcaact ccaaaaaaaa aaaaaaaaa
//