LOCUS       AY168342                8041 bp    mRNA    linear   HUM 20-MAY-2003
DEFINITION  Homo sapiens retinitis pigmentosa 1-like 1 protein (RP1L1) mRNA,
            RP1L1-2 allele, complete cds.
ACCESSION   AY168342
VERSION     AY168342.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 8041)
  AUTHORS   Bowne,S.J., Daiger,S.P., Malone,K.A., Heckenlively,J.R., Kennan,A.,
            Humphries,P., Hughbanks-Wheaton,D., Birch,D.G., Liu,Q.,
            Pierce,E.A., Zuo,J., Huang,Q., Donovan,D.D. and Sullivan,L.S.
  TITLE     Characterization of RP1L1, a highly polymorphic paralog of the
            retinitis pigmentosa 1 (RP1) gene
  JOURNAL   Mol. Vis. 9, 129-137 (2003)
   PUBMED   12724644
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8041)
  AUTHORS   Bowne,S.J., Daiger,S.P., Malone,K.A. and Sullivan,L.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2002) Human Genetics Center, University of Texas
            Health Science Center Houston, 1200 Herman Pressler, Houston, TX
            77030, USA
FEATURES             Location/Qualifiers
     source          1..8041
                     /db_xref="H-InvDB:HIT000084905"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
     gene            1..8041
                     /gene="RP1L1"
                     /allele="2"
     CDS             231..7481
                     /gene="RP1L1"
                     /allele="2"
                     /codon_start=1
                     /product="retinitis pigmentosa 1-like 1 protein"
                     /protein_id="AAN86960.1"
                     /translation="MNSTPRNAQAPSHRECFLPSVARTPSVTKVTPAKKITFLKRGDP
                     RFAGVRLAVHQRAFKTFSALMDELSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCY
                     LCSDKKPPKTPSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKTPRRILLIKNM
                     DPRLQQTVVLSHRNTRNLAAFLGKASDLLRFPVKQLYTTSGKKVDSLQALLHSPSVLV
                     CAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPE
                     RPGPSNPPVGPAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGE
                     DTLLWSRRMGRASALTAASGEDPVLGEVDPLCCVWEGYPWGFSEPGVWGPRPCRVGCR
                     EVFGRGGQPGPKYEIWTNPLHASQGERVAARKRWGLAQHVRCSGLWGHGTAGRERCSQ
                     DSASPASSTGLPEGSEPESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCID
                     GAGLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQ
                     EASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGAAVTREPLVLGLSCSWDSEGA
                     SSTPSTCTSSQQGQRRHRSRASAMSSPSSPGLGRVAPRGHPRHSHYRKDTHSPLDSSV
                     TKQVPRPPERRRACQDGSVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSSATV
                     TPAVHSDFVSGVSPHNAPSAGWAGDAGSRTCSPAPIPPHTSDSCSKSGAASPGEEARD
                     TPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEAQRGPSPEASWLCGRYCPTP
                     PRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSAS
                     QGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMT
                     YELADETTGAAGGGLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLG
                     SSDTGPQSGEGVPQGAAPEGVSEAPAEAGADREAPAGCRVSLRALPGRVSASTQIMRA
                     LMGSKQGRPSSVPEVSRPMARRLSCSAGALITCLASLQLFEEDLGSPASKVRFKDSPW
                     YQELLSISKDLWPGCDVGEDQLDSGLWELTWSQALPDLGSHAMTENFTPTSSSGVDIS
                     SGSGGSGESSVPCAMDGTLVTQGTELPLKTSNQRPDSRTYESPGDLENQQQCCFPTFL
                     NARACACATNEDEAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEXV
                     QLEXTKXXEGLQEERVQLEETKTEEGLQEEGVQLEETKETEGEGQQEEEAQLEEIEET
                     GGEGLQEEGVQLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKG
                     SQEDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSHLSETDPSASESQSGSQLEPGLE
                     KPPGATMMGQEHTQAQPTQGAAERSSSVACSAALDCDPIWVSVLLKKTEKAFLAHLAS
                     AVAELRARWGLQDNDLLDQMAAELQQDVAQRLQDSTKRELQKLQGRAGRMVLEPPREA
                     LTGELLLQTQQRRHRLRGLRNLSAFSERTLGLGPLSFTLEDEPALSTALGSQLGEEAE
                     GEEFCPCEACVRKKVSPMSPKATMGATRGPIKEAFDLQQILQRKRGEHTDGEAAEVXP
                     GKTHTDPTSTRTVQGAEGGLGPGLSQGPGVDEGEDGEGSQRLNRDKDPKLGEAEGDAM
                     AQEREGKTHNSETSAGSELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDP
                     GQSDGAEGIEAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQ
                     PESEDVETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQE
                     AEEEAQEAEGQAQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDV
                     EAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAP
                     EAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGI
                     EAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEKEAQ
                     PELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPE
                     AEGEAQPESGGETQGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQ
                     RPGSQTGPSSSRASSWGNCWQKDSENDHVLGDTRSPDAKSTGTPHAERKATRMYPESS
                     TSEQEEAPLGSRTPEQGASEGYDLQEDQALGSLAPTEAVGRADGFGQDDLDF"
BASE COUNT         1919 a         2236 c         2713 g         1165 t
ORIGIN      
        1 ctcctggccc aagggactgg ggcctcaggc tctcaggcca aggagagtgg ccccgaggac
       61 tgtccggagg agggtggcca gccctgctgc ccagagggac tgagccactg gcagggaagg
      121 aggcggtgtt ccccctggcc tgactttcct ccaaaggacg tccccctgag gcttaggggc
      181 tgagccatgc ccttgtgctc cctggaggac gcggccagag cccccacacc atgaacagca
      241 cccccaggaa tgcccaggcc ccgagccacc gtgagtgctt cctgccctct gtggctcgca
      301 ccccctcggt caccaaggtc acgccagcca aaaagatcac cttcctcaag cgaggggatc
      361 cacggtttgc tggggtccgc ctggccgttc accagcgcgc ctttaagacc ttcagcgccc
      421 tcatggacga gctctcccag cgcgtgcctc tctcctttgg ggtgcgctct gtcaccacac
      481 cccggggcct gcatagcctc agcgccctgg agcagctgga agatggaggc tgctacctct
      541 gctctgataa gaagcccccc aagaccccca gtggaccagg ccggccacag gagagaaacc
      601 ccactgctca gcagttgcgg gatgtcgaag gccagcgtga agccccaggc acctcctcct
      661 cccggaagag tcttaaaacc ccccggagga tactgctgat taagaacatg gaccctcgcc
      721 tccagcagac agtggttctc agtcacagga atactaggaa cctggccgcc tttctcggca
      781 aagcctcaga tctcctgcgc tttcctgtga agcagttgta cacgaccagc gggaaaaagg
      841 tggactcgct gcaggccctg ctgcacagcc cctctgtgct ggtgtgtgcc gggcatgagg
      901 ccttcagaac cccagccatg aaaaatgcca ggagaagcga ggctgaaact ttatctgggc
      961 tgacttcaag aaacaaaaac gggagctggg ggccaaagac caagccgagt gtgatccatt
     1021 cgcggtctcc gccaggcagc acgccacggc tgccagaaag gcctggtcct agcaaccccc
     1081 cggtgggccc tgctcctggc aggcaccctc aggacacgcc agctcagtcg ggcccgctgg
     1141 tggctggcga tgacatgaag aagaaggtcc gcatgaatga ggacggcagc ctgtccgtgg
     1201 agatgaaagt ccgcttccac ctggtcggcg aggacacgct cctatggtcc cggaggatgg
     1261 gcagggccag cgccctcacg gcagccagtg gggaagaccc cgttctgggg gaggtagacc
     1321 ccctctgctg tgtgtgggag ggctaccctt ggggcttctc agagcctggg gtgtggggac
     1381 cccggccctg cagggtggga tgcagggaag tctttggccg aggcgggcag ccagggccca
     1441 agtatgaaat ctggacgaat cccctgcatg cctcccaggg agagagagtg gcagctcgga
     1501 agaggtgggg actggcccag cacgtccgct gcagtggcct gtggggccac gggactgccg
     1561 ggagggagag atgcagccag gacagtgcca gcccagcctc cagcaccggc ctccccgagg
     1621 gctcggagcc agagtcctcc tgctgcccca ggaccccgga ggacggggtg gacagtgcca
     1681 gcccctctgc ccagataggg gctgagcgga aagctggagg gagcctgggt gaggaccccg
     1741 gcctatgcat agatggagca gggctgggcg gcccagagca aggcggccgc ctgacaccga
     1801 gggcccggag tgaggagggg gcttcttcgg actcgtcagc cagcaccggc tctcatgagg
     1861 gatccagcga atggggtggg cggccccagg gctgtccagg caaggcaagg gccgagacct
     1921 ctcagcagga ggccagcgag ggaggcgacc ccgcttctcc agccctgagt ctttcatctt
     1981 taaggagtga cgacctgcag gcagagacgc aaggacaggg taccgagcag gccacgggag
     2041 cggctgtgac aagggagcct ctggttctgg gcctttcctg ctcctgggac tcggaaggag
     2101 cctcttccac cccttccacc tgcacttcat cccagcaggg gcagagaagg cacagaagcc
     2161 gggccagtgc aatgtcctca cccagcagcc ctggccttgg ccgagtggcc ccgagaggcc
     2221 atcccaggca ttctcactac cgcaaggaca cccacagccc actggactcc tctgtaacca
     2281 agcaagtgcc gaggcctcct gagcggcgaa gggcctgcca ggatggctca gtgccacgat
     2341 attctggaag ctcatcgagc accaggacac aggcctctgg gaacctgaga cctccctcct
     2401 cgggctctct tccttcccag gaccttctgg gaaccagcag tgccactgtc acccctgcag
     2461 tccactcgga ttttgtttct ggagtctccc cgcacaacgc tccctctgcc gggtgggcag
     2521 gggacgcggg gtccaggaca tgctcgccgg cccccatacc tccccacaca tccgactcct
     2581 gctcaaaatc tggggctgcc agcccggggg aagaggccag ggacacgcct cagccctcct
     2641 cacccttggt tctgcaggtt ggacggcctg agcaaggggc ggtgggcccc caccgaagcc
     2701 actgctgctc acagcctggg acgcagccgg cccaagaggc ccagcgggga ccctcccctg
     2761 aggctagctg gctgtgtggc aggtactgtc ccaccccgcc cagggggcgg ccctgccccc
     2821 agaggcgctc ttccagctgt gggagcaccg gcagcagcca ccaaagcact gcccgggggc
     2881 caggtgggag cccgcaggag gggacacgcc agccaggccc cacgccgtcc ccaggcccca
     2941 attcaggggc atcaaggaga agcagtgcca gccagggtgc ggggtctcgg gggctgtccg
     3001 aggagaagac cttgaggagt gggggaggcc cccaggggca ggaggaggcc agtggtgtgt
     3061 cacccagctc tctgccccgc tcgtctccag aggctgtggt ccgcgaatgg ctggacaaca
     3121 ttccagaaga gcccatactc atgacatatg agttggcgga cgagaccaca ggtgcagctg
     3181 ggggtggcct gagaggcccc gaggtggacc ctggggatga ccattctctg gaaggcctgg
     3241 gggagccagc tcaggcggga cagcagtccc tggaagggga ccccggccag gacccagagc
     3301 cagagggagc cctcctgggg agtagtgaca ctggtcccca atcaggagag ggtgtccccc
     3361 aaggggcagc tccagaggga gtttccgagg cccctgcaga ggccggagca gacagagagg
     3421 ccccagcagg ctgcagggtg agcctgcggg cacttcctgg ccgggtgtct gcctccacgc
     3481 agatcatgag ggcgctgatg ggctccaagc agggccggcc cagcagcgtg cccgaagtgt
     3541 ctaggcccat ggccaggagg ctcagctgct cagccggggc cctcattact tgtctggcca
     3601 gtctgcagtt atttgaggaa gaccttgggt ctcctgccag caaagtgagg ttcaaagact
     3661 ccccttggta ccaggagctg ctcagcatct cgaaggacct gtggccagga tgtgacgttg
     3721 gggaagacca gctggactca ggcctctggg agctcacatg gagccaggct ctgccagacc
     3781 ttgggtccca tgccatgacg gagaacttca cgcccacatc ctcctctggt gtggacatca
     3841 gcagcggctc tggaggctca ggggagagta gcgtaccctg tgccatggac ggcaccctgg
     3901 tgacacaggg gacagagctg cccctgaaaa cctccaacca gaggcctgat tcaagaactt
     3961 atgagagccc aggggatctg gaaaaccaac agcagtgttg tttcccaacc ttcttgaacg
     4021 cccgagcctg cgcttgtgcc accaatgagg atgaagcaga aagagacagt gaggagcaga
     4081 gggcgagctc gaacctggag cagttagctg aaaacacagt gcaagaagag gtgcaattag
     4141 aggaaactaa agaaggaaca gaaggagaag ggctgcaaga agaggsggtg cagttagagg
     4201 rractaaary arwagaaggg ctgcaagaag agagggtgca gttagaggaa actaaaacag
     4261 aagaagggct gcaagaagag ggggtgcagt tagaggaaac taaagaaaca gaaggagaag
     4321 gacagcaaga agaagaggcg cagttagagg aaattgaaga aacaggagga gaagggctgc
     4381 aagaagaggg ggtgcagtta gaggaagtta aagaagggcc agaaggagga ctgcaaggag
     4441 aggctcttga agagggtctc aaagaggaag gacttccaga agaaggaagc gtccacgggc
     4501 aggaattgtc agaggccagc tctccggatg ggaaaggctc ccaggaagat gacccagtcc
     4561 aggaggagga agcaggaaga gcctctgcct ctgcagagcc gtgccccgca gagggcacag
     4621 aggaacccac agagccccct agtcatctca gcgagacgga cccaagtgcc agcgagagtc
     4681 agagtggctc ccagcttgag cctggtttgg aaaagccgcc cggagccacc atgatgggcc
     4741 aagagcacac gcaggcccaa cccacccagg gggctgcaga gaggagctct tcggtggcct
     4801 gcagcgcggc tctggactgc gaccccatct gggtgtccgt gttactgaag aagacggaga
     4861 aggccttcct ggcccacctt gccagtgcgg tggctgagct ccgagcacgc tggggcctgc
     4921 aggacaatga tctgctggac cagatggcgg ccgagctgca gcaggacgtg gcccaacgcc
     4981 tccaggacag caccaagaga gagctccaga agctccaggg ccgggcgggt aggatggtgc
     5041 tggagcctcc aagggaggcc ctcaccgggg agctgctcct gcagacccag cagcgcagac
     5101 accgtctccg gggcctgcga aacctctcgg ccttctctga gcggaccctg ggcctggggc
     5161 ccctctcctt caccctggag gacgagccag ccctcagcac agccctgggg agccagctgg
     5221 gcgaggaggc ggagggggag gagttctgtc cctgcgaggc ctgcgtgagg aagaaagtga
     5281 gccctatgtc ccccaaggcc acaatggggg caaccagagg tcccatcaaa gaggcctttg
     5341 acctgcagca gattctgcag aggaagaggg gagaacacac tgatggggag gcagcagagg
     5401 tggyccctgg caagacccac acggacccca cgagcactag gactgtccag ggagctgagg
     5461 gagggctggg gccggggctg agccaggggc ctggagtgga cgagggtgag gatggcgagg
     5521 ggagccagag actcaacaga gacaaagatc ccaaactcgg ggaggcagag ggagatgcaa
     5581 tggctcagga gagagaaggg aaaacccaca acagtgaaac cagtgcgggc agtgagttgg
     5641 gggaagctga gcaggaggga gagggcataa gtgaaagggg agaaactggg ggtcaaggct
     5701 ctgggcatga ggacaacttg cagggtgaag ctgcggcagg aggtgaccaa gatccaggac
     5761 agagtgatgg ggccgaaggc atagaggccc cggaggctga aggggaggcc cagccagagt
     5821 cagaaggtgt agaggcccca gaggcagaag gggatgccca ggaggctgaa ggggaggccc
     5881 agccagagtc agaagatgta gaggccccag aggcagaagg agaggcccag ccagagtcag
     5941 aagatgtaga gaccccagag gcagaatggg aggtccagcc agagtcagaa ggtgcagaag
     6001 ccccggaggc agaaaaggag gcccagccag agacagaaag tgtagaggcc ctggagactg
     6061 aaggggagga cgagccagag tcagaaggtg cagaggccca agaggcagaa gaggaggccc
     6121 aggaggcaga agggcaggcc cagccagagt cagaagttat agagtcccag gaggcagaag
     6181 aggaagccca gccagagtca gaagatgtag aggccctgga ggttgaagtg gagacccagg
     6241 aggcagaagg ggaggcccag ccagagtcag aagatgtaga ggccccagag gctgaagggg
     6301 agatgcaaga ggcagaagag gaggcccagc cagagtcaga cggtgtagag gcccagccaa
     6361 agtcagaagg tgaagaggcc caggaggttg aaggggagac ccagaagaca gaaggggatg
     6421 cccagccaga gtcagacggt gtagaggccc cggaggcaga agaggaggca caggaggctg
     6481 aaggggaggt ccaggaggca gaaggggagg cccacccaga gtcagaagat gtagatgccc
     6541 aggaggcaga aggggaggcc cagccagaat cagaaggtgt agaggcccca gaggcagaag
     6601 gggaggccca gaaggcagaa ggtatagagg ccccagagac tgaaggggag gcccagccag
     6661 agtcagaagg tatagaggcc ccagaggctg aaggggaggc ccagcctgag tcagaaggtg
     6721 tagaggccca ggatgcagaa ggggaggccc agccagagtc agaaggtata gaggcccagg
     6781 aggctgaaaa ggaggcccaa ccagagttag aaggtgtaga ggccccagag gcagaagggg
     6841 aggcccagcc agagtcagaa ggtatagagg ccccagaggc agaaggggag gcccaaccag
     6901 agttagaagg tgtagaggcc ccggaggctg aagaggaggc ccagccagag ccagaaggcg
     6961 tagagacccc ggaggctgaa ggggaggccc agccagagtc aggaggagaa actcaaggtg
     7021 agaaaaaggg gagccctcag gtcagtctag gagatggcca atctgaggag gcttctgaaa
     7081 gcagcagccc agtccctgag gacaggccca ctccaccccc ttccccaggt ggagacactc
     7141 cccaccaaag gccaggctcc caaacaggcc cttcctcctc cagagcatcc tcttggggca
     7201 actgctggca gaaagactca gaaaatgacc atgtacttgg agacacaagg agccctgatg
     7261 ccaagtccac ggggacccct catgcagaga ggaaggccac caggatgtac ccagaaagtt
     7321 ctacttctga gcaagaagag gcccctttgg gctcaaggac tccagagcag ggggccagtg
     7381 aaggttatga cctacaagag gaccaggcac tcggaagtct cgcccccact gaggcagtgg
     7441 gcagggcaga cggctttggc caagatgact tagatttcta gacaagatca agctagaaaa
     7501 caatcacgag cttgggagct ctgtttttat tcatattttt tctacaaaac tgagcaacgt
     7561 tcagtccact ggagatgtcc atagtacatg gacaaagacc aaggacttgc caaggacaca
     7621 gcccatgcca tgctgtcctg ggactcttaa gtccagaagt gtcagagagc tctgcggccc
     7681 gtcccacacg cagtgtgaag aaagggggtg tctgcggatc tgcccggtta tcggaggtca
     7741 gcccggctcc tatttatttg tctgcagagc ccgaaagatg gaactgattg gaaaggctcc
     7801 agtttagctt ttgtttgtgg gtttgttttc tgctagcaag tgttgctctc tgtcttttcc
     7861 ctgttgatct cctgttactt ttctccttgg cttctgttgg cactcacctc atttgacttt
     7921 gaggtgcttt ttttctagtc tggaatatat ttgatgactc tgcagaaata cttgggcaaa
     7981 gcaggtaact tcagagtcat tggataaagt ttgttctcaa ctccaaaaaa aaaaaaaaaa
     8041 a
//