LOCUS AY168342 8041 bp mRNA linear HUM 20-MAY-2003 DEFINITION Homo sapiens retinitis pigmentosa 1-like 1 protein (RP1L1) mRNA, RP1L1-2 allele, complete cds. ACCESSION AY168342 VERSION AY168342.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8041) AUTHORS Bowne,S.J., Daiger,S.P., Malone,K.A., Heckenlively,J.R., Kennan,A., Humphries,P., Hughbanks-Wheaton,D., Birch,D.G., Liu,Q., Pierce,E.A., Zuo,J., Huang,Q., Donovan,D.D. and Sullivan,L.S. TITLE Characterization of RP1L1, a highly polymorphic paralog of the retinitis pigmentosa 1 (RP1) gene JOURNAL Mol. Vis. 9, 129-137 (2003) PUBMED 12724644 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 8041) AUTHORS Bowne,S.J., Daiger,S.P., Malone,K.A. and Sullivan,L.S. TITLE Direct Submission JOURNAL Submitted (24-OCT-2002) Human Genetics Center, University of Texas Health Science Center Houston, 1200 Herman Pressler, Houston, TX 77030, USA FEATURES Location/Qualifiers source 1..8041 /db_xref="H-InvDB:HIT000084905" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" gene 1..8041 /gene="RP1L1" /allele="2" CDS 231..7481 /gene="RP1L1" /allele="2" /codon_start=1 /product="retinitis pigmentosa 1-like 1 protein" /protein_id="AAN86960.1" /translation="MNSTPRNAQAPSHRECFLPSVARTPSVTKVTPAKKITFLKRGDP RFAGVRLAVHQRAFKTFSALMDELSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCY LCSDKKPPKTPSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKTPRRILLIKNM DPRLQQTVVLSHRNTRNLAAFLGKASDLLRFPVKQLYTTSGKKVDSLQALLHSPSVLV CAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPE RPGPSNPPVGPAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGE DTLLWSRRMGRASALTAASGEDPVLGEVDPLCCVWEGYPWGFSEPGVWGPRPCRVGCR EVFGRGGQPGPKYEIWTNPLHASQGERVAARKRWGLAQHVRCSGLWGHGTAGRERCSQ DSASPASSTGLPEGSEPESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCID GAGLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQ EASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGAAVTREPLVLGLSCSWDSEGA SSTPSTCTSSQQGQRRHRSRASAMSSPSSPGLGRVAPRGHPRHSHYRKDTHSPLDSSV TKQVPRPPERRRACQDGSVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSSATV TPAVHSDFVSGVSPHNAPSAGWAGDAGSRTCSPAPIPPHTSDSCSKSGAASPGEEARD TPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEAQRGPSPEASWLCGRYCPTP PRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSAS QGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMT YELADETTGAAGGGLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLG SSDTGPQSGEGVPQGAAPEGVSEAPAEAGADREAPAGCRVSLRALPGRVSASTQIMRA LMGSKQGRPSSVPEVSRPMARRLSCSAGALITCLASLQLFEEDLGSPASKVRFKDSPW YQELLSISKDLWPGCDVGEDQLDSGLWELTWSQALPDLGSHAMTENFTPTSSSGVDIS SGSGGSGESSVPCAMDGTLVTQGTELPLKTSNQRPDSRTYESPGDLENQQQCCFPTFL NARACACATNEDEAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEXV QLEXTKXXEGLQEERVQLEETKTEEGLQEEGVQLEETKETEGEGQQEEEAQLEEIEET GGEGLQEEGVQLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKG SQEDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSHLSETDPSASESQSGSQLEPGLE KPPGATMMGQEHTQAQPTQGAAERSSSVACSAALDCDPIWVSVLLKKTEKAFLAHLAS AVAELRARWGLQDNDLLDQMAAELQQDVAQRLQDSTKRELQKLQGRAGRMVLEPPREA LTGELLLQTQQRRHRLRGLRNLSAFSERTLGLGPLSFTLEDEPALSTALGSQLGEEAE GEEFCPCEACVRKKVSPMSPKATMGATRGPIKEAFDLQQILQRKRGEHTDGEAAEVXP GKTHTDPTSTRTVQGAEGGLGPGLSQGPGVDEGEDGEGSQRLNRDKDPKLGEAEGDAM AQEREGKTHNSETSAGSELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDP GQSDGAEGIEAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQ PESEDVETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQE AEEEAQEAEGQAQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDV EAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAP EAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGI EAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEKEAQ PELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPE AEGEAQPESGGETQGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQ RPGSQTGPSSSRASSWGNCWQKDSENDHVLGDTRSPDAKSTGTPHAERKATRMYPESS TSEQEEAPLGSRTPEQGASEGYDLQEDQALGSLAPTEAVGRADGFGQDDLDF" BASE COUNT 1919 a 2236 c 2713 g 1165 t ORIGIN 1 ctcctggccc aagggactgg ggcctcaggc tctcaggcca aggagagtgg ccccgaggac 61 tgtccggagg agggtggcca gccctgctgc ccagagggac tgagccactg gcagggaagg 121 aggcggtgtt ccccctggcc tgactttcct ccaaaggacg tccccctgag gcttaggggc 181 tgagccatgc ccttgtgctc cctggaggac gcggccagag cccccacacc atgaacagca 241 cccccaggaa tgcccaggcc ccgagccacc gtgagtgctt cctgccctct gtggctcgca 301 ccccctcggt caccaaggtc acgccagcca aaaagatcac cttcctcaag cgaggggatc 361 cacggtttgc tggggtccgc ctggccgttc accagcgcgc ctttaagacc ttcagcgccc 421 tcatggacga gctctcccag cgcgtgcctc tctcctttgg ggtgcgctct gtcaccacac 481 cccggggcct gcatagcctc agcgccctgg agcagctgga agatggaggc tgctacctct 541 gctctgataa gaagcccccc aagaccccca gtggaccagg ccggccacag gagagaaacc 601 ccactgctca gcagttgcgg gatgtcgaag gccagcgtga agccccaggc acctcctcct 661 cccggaagag tcttaaaacc ccccggagga tactgctgat taagaacatg gaccctcgcc 721 tccagcagac agtggttctc agtcacagga atactaggaa cctggccgcc tttctcggca 781 aagcctcaga tctcctgcgc tttcctgtga agcagttgta cacgaccagc gggaaaaagg 841 tggactcgct gcaggccctg ctgcacagcc cctctgtgct ggtgtgtgcc gggcatgagg 901 ccttcagaac cccagccatg aaaaatgcca ggagaagcga ggctgaaact ttatctgggc 961 tgacttcaag aaacaaaaac gggagctggg ggccaaagac caagccgagt gtgatccatt 1021 cgcggtctcc gccaggcagc acgccacggc tgccagaaag gcctggtcct agcaaccccc 1081 cggtgggccc tgctcctggc aggcaccctc aggacacgcc agctcagtcg ggcccgctgg 1141 tggctggcga tgacatgaag aagaaggtcc gcatgaatga ggacggcagc ctgtccgtgg 1201 agatgaaagt ccgcttccac ctggtcggcg aggacacgct cctatggtcc cggaggatgg 1261 gcagggccag cgccctcacg gcagccagtg gggaagaccc cgttctgggg gaggtagacc 1321 ccctctgctg tgtgtgggag ggctaccctt ggggcttctc agagcctggg gtgtggggac 1381 cccggccctg cagggtggga tgcagggaag tctttggccg aggcgggcag ccagggccca 1441 agtatgaaat ctggacgaat cccctgcatg cctcccaggg agagagagtg gcagctcgga 1501 agaggtgggg actggcccag cacgtccgct gcagtggcct gtggggccac gggactgccg 1561 ggagggagag atgcagccag gacagtgcca gcccagcctc cagcaccggc ctccccgagg 1621 gctcggagcc agagtcctcc tgctgcccca ggaccccgga ggacggggtg gacagtgcca 1681 gcccctctgc ccagataggg gctgagcgga aagctggagg gagcctgggt gaggaccccg 1741 gcctatgcat agatggagca gggctgggcg gcccagagca aggcggccgc ctgacaccga 1801 gggcccggag tgaggagggg gcttcttcgg actcgtcagc cagcaccggc tctcatgagg 1861 gatccagcga atggggtggg cggccccagg gctgtccagg caaggcaagg gccgagacct 1921 ctcagcagga ggccagcgag ggaggcgacc ccgcttctcc agccctgagt ctttcatctt 1981 taaggagtga cgacctgcag gcagagacgc aaggacaggg taccgagcag gccacgggag 2041 cggctgtgac aagggagcct ctggttctgg gcctttcctg ctcctgggac tcggaaggag 2101 cctcttccac cccttccacc tgcacttcat cccagcaggg gcagagaagg cacagaagcc 2161 gggccagtgc aatgtcctca cccagcagcc ctggccttgg ccgagtggcc ccgagaggcc 2221 atcccaggca ttctcactac cgcaaggaca cccacagccc actggactcc tctgtaacca 2281 agcaagtgcc gaggcctcct gagcggcgaa gggcctgcca ggatggctca gtgccacgat 2341 attctggaag ctcatcgagc accaggacac aggcctctgg gaacctgaga cctccctcct 2401 cgggctctct tccttcccag gaccttctgg gaaccagcag tgccactgtc acccctgcag 2461 tccactcgga ttttgtttct ggagtctccc cgcacaacgc tccctctgcc gggtgggcag 2521 gggacgcggg gtccaggaca tgctcgccgg cccccatacc tccccacaca tccgactcct 2581 gctcaaaatc tggggctgcc agcccggggg aagaggccag ggacacgcct cagccctcct 2641 cacccttggt tctgcaggtt ggacggcctg agcaaggggc ggtgggcccc caccgaagcc 2701 actgctgctc acagcctggg acgcagccgg cccaagaggc ccagcgggga ccctcccctg 2761 aggctagctg gctgtgtggc aggtactgtc ccaccccgcc cagggggcgg ccctgccccc 2821 agaggcgctc ttccagctgt gggagcaccg gcagcagcca ccaaagcact gcccgggggc 2881 caggtgggag cccgcaggag gggacacgcc agccaggccc cacgccgtcc ccaggcccca 2941 attcaggggc atcaaggaga agcagtgcca gccagggtgc ggggtctcgg gggctgtccg 3001 aggagaagac cttgaggagt gggggaggcc cccaggggca ggaggaggcc agtggtgtgt 3061 cacccagctc tctgccccgc tcgtctccag aggctgtggt ccgcgaatgg ctggacaaca 3121 ttccagaaga gcccatactc atgacatatg agttggcgga cgagaccaca ggtgcagctg 3181 ggggtggcct gagaggcccc gaggtggacc ctggggatga ccattctctg gaaggcctgg 3241 gggagccagc tcaggcggga cagcagtccc tggaagggga ccccggccag gacccagagc 3301 cagagggagc cctcctgggg agtagtgaca ctggtcccca atcaggagag ggtgtccccc 3361 aaggggcagc tccagaggga gtttccgagg cccctgcaga ggccggagca gacagagagg 3421 ccccagcagg ctgcagggtg agcctgcggg cacttcctgg ccgggtgtct gcctccacgc 3481 agatcatgag ggcgctgatg ggctccaagc agggccggcc cagcagcgtg cccgaagtgt 3541 ctaggcccat ggccaggagg ctcagctgct cagccggggc cctcattact tgtctggcca 3601 gtctgcagtt atttgaggaa gaccttgggt ctcctgccag caaagtgagg ttcaaagact 3661 ccccttggta ccaggagctg ctcagcatct cgaaggacct gtggccagga tgtgacgttg 3721 gggaagacca gctggactca ggcctctggg agctcacatg gagccaggct ctgccagacc 3781 ttgggtccca tgccatgacg gagaacttca cgcccacatc ctcctctggt gtggacatca 3841 gcagcggctc tggaggctca ggggagagta gcgtaccctg tgccatggac ggcaccctgg 3901 tgacacaggg gacagagctg cccctgaaaa cctccaacca gaggcctgat tcaagaactt 3961 atgagagccc aggggatctg gaaaaccaac agcagtgttg tttcccaacc ttcttgaacg 4021 cccgagcctg cgcttgtgcc accaatgagg atgaagcaga aagagacagt gaggagcaga 4081 gggcgagctc gaacctggag cagttagctg aaaacacagt gcaagaagag gtgcaattag 4141 aggaaactaa agaaggaaca gaaggagaag ggctgcaaga agaggsggtg cagttagagg 4201 rractaaary arwagaaggg ctgcaagaag agagggtgca gttagaggaa actaaaacag 4261 aagaagggct gcaagaagag ggggtgcagt tagaggaaac taaagaaaca gaaggagaag 4321 gacagcaaga agaagaggcg cagttagagg aaattgaaga aacaggagga gaagggctgc 4381 aagaagaggg ggtgcagtta gaggaagtta aagaagggcc agaaggagga ctgcaaggag 4441 aggctcttga agagggtctc aaagaggaag gacttccaga agaaggaagc gtccacgggc 4501 aggaattgtc agaggccagc tctccggatg ggaaaggctc ccaggaagat gacccagtcc 4561 aggaggagga agcaggaaga gcctctgcct ctgcagagcc gtgccccgca gagggcacag 4621 aggaacccac agagccccct agtcatctca gcgagacgga cccaagtgcc agcgagagtc 4681 agagtggctc ccagcttgag cctggtttgg aaaagccgcc cggagccacc atgatgggcc 4741 aagagcacac gcaggcccaa cccacccagg gggctgcaga gaggagctct tcggtggcct 4801 gcagcgcggc tctggactgc gaccccatct gggtgtccgt gttactgaag aagacggaga 4861 aggccttcct ggcccacctt gccagtgcgg tggctgagct ccgagcacgc tggggcctgc 4921 aggacaatga tctgctggac cagatggcgg ccgagctgca gcaggacgtg gcccaacgcc 4981 tccaggacag caccaagaga gagctccaga agctccaggg ccgggcgggt aggatggtgc 5041 tggagcctcc aagggaggcc ctcaccgggg agctgctcct gcagacccag cagcgcagac 5101 accgtctccg gggcctgcga aacctctcgg ccttctctga gcggaccctg ggcctggggc 5161 ccctctcctt caccctggag gacgagccag ccctcagcac agccctgggg agccagctgg 5221 gcgaggaggc ggagggggag gagttctgtc cctgcgaggc ctgcgtgagg aagaaagtga 5281 gccctatgtc ccccaaggcc acaatggggg caaccagagg tcccatcaaa gaggcctttg 5341 acctgcagca gattctgcag aggaagaggg gagaacacac tgatggggag gcagcagagg 5401 tggyccctgg caagacccac acggacccca cgagcactag gactgtccag ggagctgagg 5461 gagggctggg gccggggctg agccaggggc ctggagtgga cgagggtgag gatggcgagg 5521 ggagccagag actcaacaga gacaaagatc ccaaactcgg ggaggcagag ggagatgcaa 5581 tggctcagga gagagaaggg aaaacccaca acagtgaaac cagtgcgggc agtgagttgg 5641 gggaagctga gcaggaggga gagggcataa gtgaaagggg agaaactggg ggtcaaggct 5701 ctgggcatga ggacaacttg cagggtgaag ctgcggcagg aggtgaccaa gatccaggac 5761 agagtgatgg ggccgaaggc atagaggccc cggaggctga aggggaggcc cagccagagt 5821 cagaaggtgt agaggcccca gaggcagaag gggatgccca ggaggctgaa ggggaggccc 5881 agccagagtc agaagatgta gaggccccag aggcagaagg agaggcccag ccagagtcag 5941 aagatgtaga gaccccagag gcagaatggg aggtccagcc agagtcagaa ggtgcagaag 6001 ccccggaggc agaaaaggag gcccagccag agacagaaag tgtagaggcc ctggagactg 6061 aaggggagga cgagccagag tcagaaggtg cagaggccca agaggcagaa gaggaggccc 6121 aggaggcaga agggcaggcc cagccagagt cagaagttat agagtcccag gaggcagaag 6181 aggaagccca gccagagtca gaagatgtag aggccctgga ggttgaagtg gagacccagg 6241 aggcagaagg ggaggcccag ccagagtcag aagatgtaga ggccccagag gctgaagggg 6301 agatgcaaga ggcagaagag gaggcccagc cagagtcaga cggtgtagag gcccagccaa 6361 agtcagaagg tgaagaggcc caggaggttg aaggggagac ccagaagaca gaaggggatg 6421 cccagccaga gtcagacggt gtagaggccc cggaggcaga agaggaggca caggaggctg 6481 aaggggaggt ccaggaggca gaaggggagg cccacccaga gtcagaagat gtagatgccc 6541 aggaggcaga aggggaggcc cagccagaat cagaaggtgt agaggcccca gaggcagaag 6601 gggaggccca gaaggcagaa ggtatagagg ccccagagac tgaaggggag gcccagccag 6661 agtcagaagg tatagaggcc ccagaggctg aaggggaggc ccagcctgag tcagaaggtg 6721 tagaggccca ggatgcagaa ggggaggccc agccagagtc agaaggtata gaggcccagg 6781 aggctgaaaa ggaggcccaa ccagagttag aaggtgtaga ggccccagag gcagaagggg 6841 aggcccagcc agagtcagaa ggtatagagg ccccagaggc agaaggggag gcccaaccag 6901 agttagaagg tgtagaggcc ccggaggctg aagaggaggc ccagccagag ccagaaggcg 6961 tagagacccc ggaggctgaa ggggaggccc agccagagtc aggaggagaa actcaaggtg 7021 agaaaaaggg gagccctcag gtcagtctag gagatggcca atctgaggag gcttctgaaa 7081 gcagcagccc agtccctgag gacaggccca ctccaccccc ttccccaggt ggagacactc 7141 cccaccaaag gccaggctcc caaacaggcc cttcctcctc cagagcatcc tcttggggca 7201 actgctggca gaaagactca gaaaatgacc atgtacttgg agacacaagg agccctgatg 7261 ccaagtccac ggggacccct catgcagaga ggaaggccac caggatgtac ccagaaagtt 7321 ctacttctga gcaagaagag gcccctttgg gctcaaggac tccagagcag ggggccagtg 7381 aaggttatga cctacaagag gaccaggcac tcggaagtct cgcccccact gaggcagtgg 7441 gcagggcaga cggctttggc caagatgact tagatttcta gacaagatca agctagaaaa 7501 caatcacgag cttgggagct ctgtttttat tcatattttt tctacaaaac tgagcaacgt 7561 tcagtccact ggagatgtcc atagtacatg gacaaagacc aaggacttgc caaggacaca 7621 gcccatgcca tgctgtcctg ggactcttaa gtccagaagt gtcagagagc tctgcggccc 7681 gtcccacacg cagtgtgaag aaagggggtg tctgcggatc tgcccggtta tcggaggtca 7741 gcccggctcc tatttatttg tctgcagagc ccgaaagatg gaactgattg gaaaggctcc 7801 agtttagctt ttgtttgtgg gtttgttttc tgctagcaag tgttgctctc tgtcttttcc 7861 ctgttgatct cctgttactt ttctccttgg cttctgttgg cactcacctc atttgacttt 7921 gaggtgcttt ttttctagtc tggaatatat ttgatgactc tgcagaaata cttgggcaaa 7981 gcaggtaact tcagagtcat tggataaagt ttgttctcaa ctccaaaaaa aaaaaaaaaa 8041 a //