LOCUS AY168341 7993 bp mRNA linear HUM 20-MAY-2003
DEFINITION Homo sapiens retinitis pigmentosa 1-like 1 protein (RP1L1) mRNA,
RP1L1-1 allele, complete cds.
ACCESSION AY168341
VERSION AY168341.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 7993)
AUTHORS Bowne,S.J., Daiger,S.P., Malone,K.A., Heckenlively,J.R., Kennan,A.,
Humphries,P., Hughbanks-Wheaton,D., Birch,D.G., Liu,Q.,
Pierce,E.A., Zuo,J., Huang,Q., Donovan,D.D. and Sullivan,L.S.
TITLE Characterization of RP1L1, a highly polymorphic paralog of the
retinitis pigmentosa 1 (RP1) gene
JOURNAL Mol. Vis. 9, 129-137 (2003)
PUBMED 12724644
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7993)
AUTHORS Bowne,S.J., Daiger,S.P., Malone,K.A. and Sullivan,L.S.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2002) Human Genetics Center, University of Texas
Health Science Center Houston, 1200 Herman Pressler, Houston, TX
77030, USA
FEATURES Location/Qualifiers
source 1..7993
/db_xref="H-InvDB:HIT000084904"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
gene 1..7993
/gene="RP1L1"
/allele="1"
CDS 231..7433
/gene="RP1L1"
/allele="1"
/codon_start=1
/product="retinitis pigmentosa 1-like 1 protein"
/protein_id="AAN86959.1"
/translation="MNSTPRNAQAPSHRECFLPSVARTPSVTKVTPAKKITFLKRGDP
RFAGVRLAVHQRAFKTFSALMDELSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCY
LCSDKKPPKTPSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKTPRRILLIKNM
DPRLQQTVVLSHRNTRNLAAFLGKASDLLRFPVKQLYTTSGKKVDSLQALLHSPSVLV
CAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPE
RPGPSNPPVGPAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGE
DTLLWSRRMGRASALTAASGEDPVLGEVDPLCCVWEGYPWGFSEPGVWGPRPCRVGCR
EVFGRGGQPGPKYEIWTNPLHASQGERVAARKRWGLAQHVRCSGLWGHGTAGRERCSQ
DSASPASSTGLPEGSEPESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCID
GAGLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQ
EASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGAAVTREPLVLGLSCSWDSEGA
SSTPSTCTSSQQGQRRHRSRASAMSSPSSPGLGRVAPRGHPRHSHYRKDTHSPLDSSV
TKQVPRPPERRRACQDGSVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSSATV
TPAVHSDFVSGVSPHNAPSAGWAGDAGSRTCSPAPIPPHTSDSCSKSGAASPGEEARD
TPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEAQRGPSPEASWLCGRYCPTP
PRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSAS
QGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMT
YELADETTGAAGGGLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLG
SSDTGPQSGEGVPQGAAPEGVSEAPAEAGADREAPAGCRVSLRALPGRVSASTQIMRA
LMGSKQGRPSSVPEVSRPMARRLSCSAGALITCLASLQLFEEDLGSPASKVRFKDSPW
YQELLSISKDLWPGCDVGEDQLDSGLWELTWSQALPDLGSHAMTENFTPTSSSGVDIS
SGSGGSGESSVPCAMDGTLVTQGTELPLKTSNQRPDSRTYESPGDLENQQQCCFPTFL
NARACACATNEDEAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEGV
QLEETKTEEGLQEEGVQLEETKETEGEGQQEEEAQLEEIEETGGEGLQEEGVQLEEVK
EGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQEDDPVQEEEAGRAS
ASAEPCPAEGTEEPTEPPSHLSETDPSASESQSGSQLEPGLEKPPGATMMGQEHTQAQ
PTQGAAERSSSVACSAALDCDPIWVSVLLKKTEKAFLAHLASAVAELRARWGLQDNDL
LDQMAAELQQDVAQRLQDSTKRELQKLQGRAGRMVLEPPREALTGELLLQTQQRRHRL
RGLRNLSAFSERTLGLGPLSFTLEDEPALSTALGSQLGEEAEGEEFCPCEACVRKKVS
PMSPKATMGATRGPIKEAFDLQQILQRKRGEHTDGEAAEVXPGKTHTDPTSTRTVQGA
EGGLGPGLSQGPGVDEGEDGEGSQRLNRDKDPKLGEAEGDAMAQEREGKTHNSETSAG
SELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEG
EAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAEWEVQ
PESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEEAQEAEGQAQPES
EVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAEEEA
QPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQEA
EGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGI
EAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEKEAQPELEGVEAPEAEGEAQ
PESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESGGETQGE
KKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRASSW
GNCWQKDSENDHVLGDTRSPDAKSTGTPHAERKATRMYPESSTSEQEEAPLGSRTPEQ
GASEGYDLQEDQALGSLAPTEAVGRADGFGQDDLDF"
BASE COUNT 1902 a 2232 c 2698 g 1160 t
ORIGIN
1 ctcctggccc aagggactgg ggcctcaggc tctcaggcca aggagagtgg ccccgaggac
61 tgtccggagg agggtggcca gccctgctgc ccagagggac tgagccactg gcagggaagg
121 aggcggtgtt ccccctggcc tgactttcct ccaaaggacg tccccctgag gcttaggggc
181 tgagccatgc ccttgtgctc cctggaggac gcggccagag cccccacacc atgaacagca
241 cccccaggaa tgcccaggcc ccgagccacc gtgagtgctt cctgccctct gtggctcgca
301 ccccctcggt caccaaggtc acgccagcca aaaagatcac cttcctcaag cgaggggatc
361 cacggtttgc tggggtccgc ctggccgttc accagcgcgc ctttaagacc ttcagcgccc
421 tcatggacga gctctcccag cgcgtgcctc tctcctttgg ggtgcgctct gtcaccacac
481 cccggggcct gcatagcctc agcgccctgg agcagctgga agatggaggc tgctacctct
541 gctctgataa gaagcccccc aagaccccca gtggaccagg ccggccacag gagagaaacc
601 ccactgctca gcagttgcgg gatgtcgaag gccagcgtga agccccaggc acctcctcct
661 cccggaagag tcttaaaacc ccccggagga tactgctgat taagaacatg gaccctcgcc
721 tccagcagac agtggttctc agtcacagga atactaggaa cctggccgcc tttctcggca
781 aagcctcaga tctcctgcgc tttcctgtga agcagttgta cacgaccagc gggaaaaagg
841 tggactcgct gcaggccctg ctgcacagcc cctctgtgct ggtgtgtgcc gggcatgagg
901 ccttcagaac cccagccatg aaaaatgcca ggagaagcga ggctgaaact ttatctgggc
961 tgacttcaag aaacaaaaac gggagctggg ggccaaagac caagccgagt gtgatccatt
1021 cgcggtctcc gccaggcagc acgccacggc tgccagaaag gcctggtcct agcaaccccc
1081 cggtgggccc tgctcctggc aggcaccctc aggacacgcc agctcagtcg ggcccgctgg
1141 tggctggcga tgacatgaag aagaaggtcc gcatgaatga ggacggcagc ctgtccgtgg
1201 agatgaaagt ccgcttccac ctggtcggcg aggacacgct cctatggtcc cggaggatgg
1261 gcagggccag cgccctcacg gcagccagtg gggaagaccc cgttctgggg gaggtagacc
1321 ccctctgctg tgtgtgggag ggctaccctt ggggcttctc agagcctggg gtgtggggac
1381 cccggccctg cagggtggga tgcagggaag tctttggccg aggcgggcag ccagggccca
1441 agtatgaaat ctggacgaat cccctgcatg cctcccaggg agagagagtg gcagctcgga
1501 agaggtgggg actggcccag cacgtccgct gcagtggcct gtggggccac gggactgccg
1561 ggagggagag atgcagccag gacagtgcca gcccagcctc cagcaccggc ctccccgagg
1621 gctcggagcc agagtcctcc tgctgcccca ggaccccgga ggacggggtg gacagtgcca
1681 gcccctctgc ccagataggg gctgagcgga aagctggagg gagcctgggt gaggaccccg
1741 gcctatgcat agatggagca gggctgggcg gcccagagca aggcggccgc ctgacaccga
1801 gggcccggag tgaggagggg gcttcttcgg actcgtcagc cagcaccggc tctcatgagg
1861 gatccagcga atggggtggg cggccccagg gctgtccagg caaggcaagg gccgagacct
1921 ctcagcagga ggccagcgag ggaggcgacc ccgcttctcc agccctgagt ctttcatctt
1981 taaggagtga cgacctgcag gcagagacgc aaggacaggg taccgagcag gccacgggag
2041 cggctgtgac aagggagcct ctggttctgg gcctttcctg ctcctgggac tcggaaggag
2101 cctcttccac cccttccacc tgcacttcat cccagcaggg gcagagaagg cacagaagcc
2161 gggccagtgc aatgtcctca cccagcagcc ctggccttgg ccgagtggcc ccgagaggcc
2221 atcccaggca ttctcactac cgcaaggaca cccacagccc actggactcc tctgtaacca
2281 agcaagtgcc gaggcctcct gagcggcgaa gggcctgcca ggatggctca gtgccacgat
2341 attctggaag ctcatcgagc accaggacac aggcctctgg gaacctgaga cctccctcct
2401 cgggctctct tccttcccag gaccttctgg gaaccagcag tgccactgtc acccctgcag
2461 tccactcgga ttttgtttct ggagtctccc cgcacaacgc tccctctgcc gggtgggcag
2521 gggacgcggg gtccaggaca tgctcgccgg cccccatacc tccccacaca tccgactcct
2581 gctcaaaatc tggggctgcc agcccggggg aagaggccag ggacacgcct cagccctcct
2641 cacccttggt tctgcaggtt ggacggcctg agcaaggggc ggtgggcccc caccgaagcc
2701 actgctgctc acagcctggg acgcagccgg cccaagaggc ccagcgggga ccctcccctg
2761 aggctagctg gctgtgtggc aggtactgtc ccaccccgcc cagggggcgg ccctgccccc
2821 agaggcgctc ttccagctgt gggagcaccg gcagcagcca ccaaagcact gcccgggggc
2881 caggtgggag cccgcaggag gggacacgcc agccaggccc cacgccgtcc ccaggcccca
2941 attcaggggc atcaaggaga agcagtgcca gccagggtgc ggggtctcgg gggctgtccg
3001 aggagaagac cttgaggagt gggggaggcc cccaggggca ggaggaggcc agtggtgtgt
3061 cacccagctc tctgccccgc tcgtctccag aggctgtggt ccgcgaatgg ctggacaaca
3121 ttccagaaga gcccatactc atgacatatg agttggcgga cgagaccaca ggtgcagctg
3181 ggggtggcct gagaggcccc gaggtggacc ctggggatga ccattctctg gaaggcctgg
3241 gggagccagc tcaggcggga cagcagtccc tggaagggga ccccggccag gacccagagc
3301 cagagggagc cctcctgggg agtagtgaca ctggtcccca atcaggagag ggtgtccccc
3361 aaggggcagc tccagaggga gtttccgagg cccctgcaga ggccggagca gacagagagg
3421 ccccagcagg ctgcagggtg agcctgcggg cacttcctgg ccgggtgtct gcctccacgc
3481 agatcatgag ggcgctgatg ggctccaagc agggccggcc cagcagcgtg cccgaagtgt
3541 ctaggcccat ggccaggagg ctcagctgct cagccggggc cctcattact tgtctggcca
3601 gtctgcagtt atttgaggaa gaccttgggt ctcctgccag caaagtgagg ttcaaagact
3661 ccccttggta ccaggagctg ctcagcatct cgaaggacct gtggccagga tgtgacgttg
3721 gggaagacca gctggactca ggcctctggg agctcacatg gagccaggct ctgccagacc
3781 ttgggtccca tgccatgacg gagaacttca cgcccacatc ctcctctggt gtggacatca
3841 gcagcggctc tggaggctca ggggagagta gcgtaccctg tgccatggac ggcaccctgg
3901 tgacacaggg gacagagctg cccctgaaaa cctccaacca gaggcctgat tcaagaactt
3961 atgagagccc aggggatctg gaaaaccaac agcagtgttg tttcccaacc ttcttgaacg
4021 cccgagcctg cgcttgtgcc accaatgagg atgaagcaga aagagacagt gaggagcaga
4081 gggcgagctc gaacctggag cagttagctg aaaacacagt gcaagaagag gtgcaattag
4141 aggaaactaa agaaggaaca gaaggagaag ggctgcaaga agagggggtg cagttagagg
4201 aaactaaaac agaagaaggg ctgcaagaag agggggtgca gttagaggaa actaaagaaa
4261 cagaaggaga aggacagcaa gaagaagagg cgcagttaga ggaaattgaa gaaacaggag
4321 gagaagggct gcaagaagag ggggtgcagt tagaggaagt taaagaaggg ccagaaggag
4381 gactgcaagg agaggctctt gaagagggtc tcaaagagga aggacttcca gaagaaggaa
4441 gcgtccacgg gcaggaattg tcagaggcca gctctccgga tgggaaaggc tcccaggaag
4501 atgacccagt ccaggaggag gaagcaggaa gagcctctgc ctctgcagag ccgtgccccg
4561 cagagggcac agaggaaccc acagagcccc ctagtcatct cagcgagacg gacccaagtg
4621 ccagcgagag tcagagtggc tcccagcttg agcctggttt ggaaaagccg cccggagcca
4681 ccatgatggg ccaagagcac acgcaggccc aacccaccca gggggctgca gagaggagct
4741 cttcggtggc ctgcagcgcg gctctggact gcgaccccat ctgggtgtcc gtgttactga
4801 agaagacgga gaaggccttc ctggcccacc ttgccagtgc ggtggctgag ctccgagcac
4861 gctggggcct gcaggacaat gatctgctgg accagatggc ggccgagctg cagcaggacg
4921 tggcccaacg cctccaggac agcaccaaga gagagctcca gaagctccag ggccgggcgg
4981 gtaggatggt gctggagcct ccaagggagg ccctcaccgg ggagctgctc ctgcagaccc
5041 agcagcgcag acaccgtctc cggggcctgc gaaacctctc ggccttctct gagcggaccc
5101 tgggcctggg gcccctctcc ttcaccctgg aggacgagcc agccctcagc acagccctgg
5161 ggagccagct gggcgaggag gcggaggggg aggagttctg tccctgcgag gcctgcgtga
5221 ggaagaaagt gagccctatg tcccccaagg ccacaatggg ggcaaccaga ggtcccatca
5281 aagaggcctt tgacctgcag cagattctgc agaggaagag gggagaacac actgatgggg
5341 aggcagcaga ggtggyccct ggcaagaccc acacggaccc cacgagcact aggactgtcc
5401 agggagctga gggagggctg gggccggggc tgagccaggg gcctggagtg gacgagggtg
5461 aggatggcga ggggagccag agactcaaca gagacaaaga tcccaaactc ggggaggcag
5521 agggagatgc aatggctcag gagagagaag ggaaaaccca caacagtgaa accagtgcgg
5581 gcagtgagtt gggggaagct gagcaggagg gagagggcat aagtgaaagg ggagaaactg
5641 ggggtcaagg ctctgggcat gaggacaact tgcagggtga agctgcggca ggaggtgacc
5701 aagatccagg acagagtgat ggggccgaag gcatagaggc cccggaggct gaaggggagg
5761 cccagccaga gtcagaaggt gtagaggccc cagaggcaga aggggatgcc caggaggctg
5821 aaggggaggc ccagccagag tcagaagatg tagaggcccc agaggcagaa ggagaggccc
5881 agccagagtc agaagatgta gagaccccag aggcagaatg ggaggtccag ccagagtcag
5941 aaggtgcaga agccccggag gcagaaaagg aggcccagcc agagacagaa agtgtagagg
6001 ccctggagac tgaaggggag gacgagccag agtcagaagg tgcagaggcc caagaggcag
6061 aagaggaggc ccaggaggca gaagggcagg cccagccaga gtcagaagtt atagagtccc
6121 aggaggcaga agaggaagcc cagccagagt cagaagatgt agaggccctg gaggttgaag
6181 tggagaccca ggaggcagaa ggggaggccc agccagagtc agaagatgta gaggccccag
6241 aggctgaagg ggagatgcaa gaggcagaag aggaggccca gccagagtca gacggtgtag
6301 aggcccagcc aaagtcagaa ggtgaagagg cccaggaggt tgaaggggag acccagaaga
6361 cagaagggga tgcccagcca gagtcagacg gtgtagaggc cccggaggca gaagaggagg
6421 cacaggaggc tgaaggggag gtccaggagg cagaagggga ggcccaccca gagtcagaag
6481 atgtagatgc ccaggaggca gaaggggagg cccagccaga atcagaaggt gtagaggccc
6541 cagaggcaga aggggaggcc cagaaggcag aaggtataga ggccccagag actgaagggg
6601 aggcccagcc agagtcagaa ggtatagagg ccccagaggc tgaaggggag gcccagcctg
6661 agtcagaagg tgtagaggcc caggatgcag aaggggaggc ccagccagag tcagaaggta
6721 tagaggccca ggaggctgaa aaggaggccc aaccagagtt agaaggtgta gaggccccag
6781 aggcagaagg ggaggcccag ccagagtcag aaggtataga ggccccagag gcagaagggg
6841 aggcccaacc agagttagaa ggtgtagagg ccccggaggc tgaagaggag gcccagccag
6901 agccagaagg cgtagagacc ccggaggctg aaggggaggc ccagccagag tcaggaggag
6961 aaactcaagg tgagaaaaag gggagccctc aggtcagtct aggagatggc caatctgagg
7021 aggcttctga aagcagcagc ccagtccctg aggacaggcc cactccaccc ccttccccag
7081 gtggagacac tccccaccaa aggccaggct cccaaacagg cccttcctcc tccagagcat
7141 cctcttgggg caactgctgg cagaaagact cagaaaatga ccatgtactt ggagacacaa
7201 ggagccctga tgccaagtcc acggggaccc ctcatgcaga gaggaaggcc accaggatgt
7261 acccagaaag ttctacttct gagcaagaag aggccccttt gggctcaagg actccagagc
7321 agggggccag tgaaggttat gacctacaag aggaccaggc actcggaagt ctcgccccca
7381 ctgaggcagt gggcagggca gacggctttg gccaagatga cttagatttc tagacaagat
7441 caagctagaa aacaatcacg agcttgggag ctctgttttt attcatattt tttctacaaa
7501 actgagcaac gttcagtcca ctggagatgt ccatagtaca tggacaaaga ccaaggactt
7561 gccaaggaca cagcccatgc catgctgtcc tgggactctt aagtccagaa gtgtcagaga
7621 gctctgcggc ccgtcccaca cgcagtgtga agaaaggggg tgtctgcgga tctgcccggt
7681 tatcggaggt cagcccggct cctatttatt tgtctgcaga gcccgaaaga tggaactgat
7741 tggaaaggct ccagtttagc ttttgtttgt gggtttgttt tctgctagca agtgttgctc
7801 tctgtctttt ccctgttgat ctcctgttac ttttctcctt ggcttctgtt ggcactcacc
7861 tcatttgact ttgaggtgct ttttttctag tctggaatat atttgatgac tctgcagaaa
7921 tacttgggca aagcaggtaa cttcagagtc attggataaa gtttgttctc aactccaaaa
7981 aaaaaaaaaa aaa
//